Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4850T.65.0% 434.0 / inf 855intergenic (+263/‑412)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base T (66/200);  new base . (237/258);  total (341/514)
Fisher's exact test for biased strand distribution p-value = 4.08e-10
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.91e-06

Only 100 of 938 total aligned reads displayed.

AAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑A‑AATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATA  >  CP016816/202358‑202608
                                                                                                                                |                                                                                                                             
 atttAGTTTAAATTATATATTTAAGTTTAATTTAAATAACATTAACTTAATAATTCTTATAATTTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCtt                                                                                                                              <  1:6285330/126‑1 (MQ=255)
 aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAAACCCCtt                                                                                                                              >  2:4848958/1‑128 (MQ=255)
  gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCtt                                                                                                                              >  1:5996442/1‑127 (MQ=255)
  gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACCtta                                                                                                                             >  1:8350223/1‑127 (MQ=255)
  gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAATCCCCttaa                                                                                                                            >  2:8013979/1‑126 (MQ=255)
   ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACACCttaa                                                                                                                            >  2:931319/1‑126 (MQ=255)
    tAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTATATCTTCACAAAT‑AAAAAAAAAAAAATCACCttaaa                                                                                                                           >  1:9023695/1‑125 (MQ=255)
         tAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCACttaaaaatta                                                                                                                      >  2:9576780/1‑120 (MQ=255)
            ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATATTCACAAAT‑AAAAAAAAAAAAAACCCC‑‑‑taaa‑a‑aataaaaa                                                                                                              >  2:9165797/1‑128 (MQ=255)
            aatatacatttAAGTTTAATTAAAAAACCAAAAAATTAATAATTCTTATAATTTATATCCTCGTTATTTATTTTTTTATTTGTTTAAAATAACAAAA‑AAAAAAAAAACAATCCCC‑‑Ttaaa‑a‑attaaaa                                                                                                               <  1:7779155/119‑1 (MQ=255)
                taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAA‑A‑ATTaaaaaaaa                                                                                                           >  2:8600476/1‑128 (MQ=255)
                taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTATTTATCTTCACAAAT‑AAAAAAAAAACAATAAC‑‑‑ATAAA‑A‑AATaaaaaaaaa                                                                                                          >  2:4197613/1‑128 (MQ=255)
                taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACATACCCC‑‑TTAAA‑A‑TTTaaaaaaaa                                                                                                           >  2:9411744/1‑128 (MQ=255)
                taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGATTATCTTCACAAAT‑AAAAAAAAAACAAT‑‑ACAATTAAA‑A‑ATTaaaaaaaa                                                                                                           >  2:3476763/1‑128 (MQ=255)
                taGAGTTAAGGTTAATTAAAATACCAAAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑ATAAA‑A‑AATaaaaaaaa                                                                                                           >  2:7600894/1‑128 (MQ=255)
                  tagTTAATGGTAAATAAAAAAAAAAAAACTAAATAATTCTTATAATTTATATCCTCGTTAAATATTTTTTTTATTGTTTATCTTCAAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATTaaaaaaaaaa                                                                                                         <  1:8527671/127‑1 (MQ=255)
                  gagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑‑TAAA‑A‑AATtaaaaaaaaaa                                                                                                        >  2:2240090/1‑128 (MQ=255)
                    gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGTGATCTATTTTTTTATTTGTTTATCTAAAAAAAT‑AAAAAAAAAAAAAACCCAAT‑‑‑AA‑A‑AATaaaaaaaaaaaaa                                                                                                      >  2:7731394/1‑128 (MQ=255)
                      taattttaattaaAATAAAATAAAATTAATAATATTTAAAATTTTTATCATAGTTATATATTTTTTTATTTTTTTAACTTAACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATTaaaaaaaaaaaaaa                                                                                                     <  1:5755040/123‑1 (MQ=255)
                      tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAA‑‑AACAATTAAA‑A‑ATTaaaaaaaaaaaaaa                                                                                                     >  2:3217636/1‑128 (MQ=255)
                      tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAA‑AATCCCC‑‑‑TAAA‑A‑AATtaaaaaaaaaaaaaaa                                                                                                   >  1:7366834/1‑128 (MQ=255)
                      tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTAAATTATTATTTTATAATAATCACAAA‑‑AAAAAAAAAACAATACACaaaaaaa‑a‑aaaaaaaaaaaaaaaa                                                                                                      >  2:3935940/1‑128 (MQ=255)
                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑A‑AATaaaaaaaaaaaaaaaa                                                                                                   >  2:2425109/1‑128 (MQ=255)
                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑A‑AATaaaaaaaaaaaaaaaa                                                                                                   >  2:2998960/1‑128 (MQ=255)
                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATTaaaaaaaaaaaaaaa                                                                                                    >  2:7945990/1‑128 (MQ=255)
                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATTaaaaaaaaaaaaaaa                                                                                                    >  1:7711372/1‑128 (MQ=255)
                       aaGGTTAATTAAAATACCATAAACTGAATAATTCTTATAATGTAGAACCTCGTGATCTATTTATTTATTTGTTTTTCTTCACAAAT‑AAAAAATAAACAATACAC‑‑TTAAA‑A‑ATTaaaaaaaaaaaaaca                                                                                                    >  2:7472050/1‑126 (MQ=255)
                        aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTATTTGTATATCTTAACAAAT‑AAAAAAAAAAAAAACCACTaaaaaa‑a‑aaaaaaaaaaaaaaaaa                                                                                                     >  2:575251/1‑128 (MQ=255)
                         ttttaattaaAAAACCATAAACTTAAAAAATATTATAATTTAAAAAAATGTTATATATTTTTTTATTTTTTTATAATAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑A‑ATTaaaaaaaaaaaaaaaaa                                                                                                  <  1:801100/126‑1 (MQ=255)
                         tgTTAAATAAAATAAAAAAAAATTAATAATTATTAAAATTTATAAAATCTTTATATATTTTTTTTTTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑A‑AATaaaaaaaaaaaaaaaaa                                                                                                  <  1:8263163/127‑1 (MQ=255)
                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTTATCTATTTTTTAATTATATTATCTTCACAAATAAAAAAAAAAACAAAAACCAaaaaaa‑a‑aaaaaaaaaaaaaaaaa                                                                                                     >  2:6739150/1‑128 (MQ=255)
                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATTaaaaaaaaaaaaaaaaa                                                                                                  >  1:8109831/1‑128 (MQ=255)
                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAAT‑‑CAAATTAAA‑A‑ATTaaaaaaaaaaaaaaaaa                                                                                                  >  1:8892712/1‑128 (MQ=255)
                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGAGATCTATTTATTTATTTGTTTAACTTAAAAAAT‑AAAAAAAAAACAAAAACAAT‑‑‑AA‑A‑AATaaaaaaaaaaaaaaaaaa                                                                                                 >  2:627365/1‑128 (MQ=255)
                         ggTTAATTAAAATACCATAAACTTAATAAATCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTATATCTTCACAAAT‑AAAAAAAAAAAAATAACC‑‑‑TAAA‑A‑AATtaaaaaaaaaaaaaaaaa                                                                                                 >  2:3339862/1‑128 (MQ=255)
                            taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCAAAAAT‑AAAAAAAAAACAATAAC‑‑‑ATAAA‑A‑AATtaaaaaaaaaaaaaaaaaaaa                                                                                              >  1:4891726/1‑128 (MQ=255)
                            taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATTaaaaaaaaaaaaaaaaaaaa                                                                                               >  2:7310333/1‑128 (MQ=255)
                             aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCC‑‑ATTAAA‑A‑ATTaaaaaaaaaaaaaaaaaaaaa                                                                                              >  2:5307997/1‑128 (MQ=255)
                             aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCC‑‑TAAAA‑A‑ATTaaaaaaaaaaaaaaaaaaaaa                                                                                              >  1:2387431/1‑128 (MQ=255)
                             aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTATTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCAATaaaaa‑a‑aaaaaaaaaaaaaaaaaaaaca                                                                                                >  2:4987404/1‑126 (MQ=255)
                             aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCCAC‑‑TTAAA‑A‑ATTaaaaaaaaaaaaaaaaaaaat                                                                                              >  2:5084876/1‑127 (MQ=255)
                              attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAA‑AAAAAAAAAACAAT‑‑CAAAAAAAA‑A‑ATTaaaaaaaaaaaaaaaaaaaaaa                                                                                             >  2:1957498/1‑127 (MQ=255)
                              ataaaaaTAACATAAAATTAATAATTCTTATAATGTAGATCATCGTTTTATATTTTTTTATTTTTTTATATTAAAAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATTaaaaaaaaaaaaaaaaactaaa                                                                                             <  1:2997934/125‑6 (MQ=255)
                               ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATATTTTTATTTTTTTATATTAAAAAAT‑AAAAAAAAAAAAAAAACAATAAAAA‑T‑aaaaaaaaaaaaaaaaaaaaaaaa                                                                                              >  2:1448032/1‑128 (MQ=255)
                               ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGTGATCTATTTTTTTATTTGTTTATCTTAACAAAT‑AAAAAAAAAAAAAACCCC‑‑‑TAAA‑A‑AATaaaaaaaaaaaaaaaaaaaaaaaa                                                                                           >  2:4418452/1‑125 (MQ=255)
                                  aaaTACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCAC‑‑‑AAAAA‑A‑AATTAAAAAAAAAAAAAAAAAAAA‑Taaaaa                                                                                       >  2:466573/1‑128 (MQ=255)
                                  aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATTaaaaaaaaaaaaaaaaaaaaaaataa                                                                                         >  2:8947527/1‑123 (MQ=255)
                                   aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAA‑A‑ATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                        >  2:2576141/1‑128 (MQ=255)
                                    aTAACATAAATTTAAAAATTTTTAAATTGTATAAAATCGTTTTTTATTTTTTTATTTTTTTTTATTAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑‑TAAA‑A‑AAT‑AAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                     <  1:3255898/128‑1 (MQ=255)
                                    aTAACATAAAATTTAAAATTCTTTAAATTTATAACCTCTTGATCTTTTTTTTTATTTTTTTTATTTAAAAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑A‑AAT‑TAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                     <  1:9177285/128‑1 (MQ=255)
                                     taacATATAATTATTAATTTTTATAATTTATATTCTCGTTTTTTTTTTTTTTATTTTTTTATCTTAACAAAA‑AAAAAAAAAAAAAACCCCAT‑‑‑AA‑A‑AATTAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                     <  2:8659485/125‑1 (MQ=255)
                                        aaTAAAATTAAAAATTTTTATAATTTATAAACTACAGATATAATTTTTTATTTTTTTAACATAAAAAAA‑AAAAAAAAAAAAAACCCC‑TTAAAA‑A‑ATAAAAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                    <  1:4288531/127‑1 (MQ=255)
                                         aTAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑A‑AATTAAAAAAAAAAAAAAGAAAAACTAAAAACAAAct                                                                                 <  1:7274326/128‑1 (MQ=255)
                                            aaattAAAAATTATTAAAATTTAAAACCTATTTATATAATTTTTTATTTTTTTAAAATAAAAAAT‑AAAAAAAAAACAAAACCCTT‑‑‑AA‑A‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                              <  1:6471047/125‑1 (MQ=255)
                                                ttataatTCTTATAATTTTTAACATATTTATATATTTTTTTATTTTTTTAACTTAAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑A‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAttt                                                                           <  1:4714947/126‑1 (MQ=255)
                                                taataaTTATTAAAATTTATATACTAGTTTAATATTTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAAACCCCATAAAAATT‑AAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                              <  1:8813664/128‑1 (MQ=255)
                                                   taatTATTATAAATTATATAATAGTGATATATTTTTTTTTTTTTTTATATTCAAAAAA‑AAAAAAAAAAAAATACCCTT‑‑‑AA‑A‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTa                                                                       <  1:3373525/128‑1 (MQ=255)
                                                    tattattATAATTTATATCCAAGTTATATATTTTTTTATTTTTTTATATTAAAAAAT‑AAAAAAAAAACAATCCCC‑TTAAAA‑A‑TTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                        <  1:4514456/127‑1 (MQ=255)
                                                                  tataacaccttaTCTATTTATTTATTTTTTTAAATTCACAAAA‑AAAAAAAAAAAAATCCCC‑TTAAAA‑A‑TTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatta                                                          <  1:5256252/117‑1 (MQ=255)
                                                                  atatccaacttttCTATTTTTTTATTTTTTTTTATTAAAAAAA‑AAAAAAAAAAAAAAACC‑‑ATTAAA‑A‑ATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                         <  1:1194953/116‑1 (MQ=255)
                                                                    aacaacttGATCAATTTTTTTATATTTTAATAATAACAAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑A‑AAT‑‑‑TAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcaca                                                   <  1:5098023/121‑1 (MQ=255)
                                                                     tacaatttttatATTTTTTTATTTGTTTTTTTTAAAAAAT‑AAAAAAAAAAAAATACCATT‑‑‑AA‑A‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                     <  1:7468811/117‑1 (MQ=255)
                                                                     taatattgaaatatttttttattttttTATATTTACAAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑A‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                     <  1:9536472/117‑1 (MQ=255)
                                                                      tctagtttttttttttttttttttttTATTTTCAAAAAT‑AAAAAAAAAAAAATTACCTT‑‑‑AA‑A‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                    <  2:8321074/116‑1 (MQ=255)
                                                                      aactttatatattttttttATTT‑ATTATATTAAAAAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑A‑AAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACat                                                  <  1:6997000/116‑1 (MQ=255)
                                                                       caatttatataattttttttttttttATATTAAAAAAA‑AAAAAAAAAAAAATACCC‑‑TTAAA‑A‑AAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcaca                                                   <  1:5482809/116‑1 (MQ=255)
                                                                       atcttttataatttttttatttttttAAAATAAAAAAA‑AAAAAAAAAAAAAAACCCATAAAAA‑ATAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                       <  1:2577267/118‑1 (MQ=255)
                                                                        tatttatatatttttttattttttTATATTAAAAAAA‑AAAAAAAAAACAAACCCC‑‑TTAAA‑A‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcaca                                                   <  1:7863337/120‑1 (MQ=255)
                                                                         atttttatttttttttatttttttaTAATAAAAAAT‑AAAAAAAAAAAAAACACCTT‑‑‑AA‑A‑AAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                <  1:1374526/119‑1 (MQ=255)
                                                                           ttttatatttttttattttttTTATTTTAAAAAT‑AAAAAAAAAAAAATACCCTTT‑‑‑A‑A‑AAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                              <  2:949014/123‑1 (MQ=255)
                                                                            tttttatttttttattttttTTTATTAAAAAAA‑AAAAAAAAAAAAATACCCTTAAAAA‑A‑TTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                 <  1:8677592/124‑1 (MQ=255)
                                                                            tttatatttttttattttttTAACTTAAAAAAT‑‑AAAAAAAAACAAAACCC‑ATAAAA‑A‑TTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                               <  1:1026212/124‑1 (MQ=255)
                                                                            tataaatttttttatttttttATATT‑AAAAAA‑AAAAAAAAAAAAAAAACCATAAAAA‑A‑TAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                <  1:1692784/123‑1 (MQ=255)
                                                                              aatatttttttattttttTATCTTAACAAAA‑AAAAAAAAAAAAATCCCATT‑‑‑AA‑A‑AAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttattt                                           <  1:977642/126‑1 (MQ=255)
                                                                                tATTTTTTTTTTTTTTTTAATTAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑A‑AATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttattt                                           <  1:8596661/128‑1 (MQ=255)
                                                                                  ttttttttttttttTAGATT‑AAAAAA‑AAAAAAAAAAAAAAAACCTTTAAAA‑A‑TTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                          <  2:8823063/128‑1 (MQ=255)
                                                                                  tttttttatttttttttattAAAAAAA‑AAAAAAAAAAAAAAAACC‑CTTAAA‑A‑AATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                          <  2:8089018/128‑1 (MQ=255)
                                                                                  tttttttATTTGTTTAATATAAAAAAA‑AAAAAAAAAAAAATAACATTT‑‑‑A‑A‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                        <  1:8739563/128‑1 (MQ=255)
                                                                                   ttttttatttttttatAATTAAAAAA‑AAAAAAAAAAAAAACACCTTT‑‑AA‑A‑ATTTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                        <  2:8482398/128‑1 (MQ=255)
                                                                                    tttttAATTTTTTAAATTCAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑A‑AAT‑‑‑‑AAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                   <  1:8198574/128‑1 (MQ=255)
                                                                                      ttttttttttttTATTAAAAAAT‑AAAAAAAAAAAAATTCCATTT‑‑AA‑A‑AAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                   <  2:8216592/128‑1 (MQ=255)
                                                                                       ttATTTTTTTATATTAACAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑A‑AAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTGAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                   <  1:7235383/128‑1 (MQ=255)
                                                                                        ttttttttTATCTTAAAAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑A‑AAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                                 <  1:3692427/126‑1 (MQ=255)
                                                                                        tATTTGTTTATATTAACAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑A‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                   <  1:2799726/128‑1 (MQ=255)
                                                                                         tttttttTATATTCAAAAAA‑AAAAAAAAAAAAAAACCC‑‑‑TATA‑A‑AAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                <  1:6741130/127‑1 (MQ=255)
                                                                                          ttttttTATTTTAAAAAAA‑AAAAAAAAAAAAATCTACTT‑‑‑AA‑A‑AATT‑‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                              <  1:2455383/128‑1 (MQ=255)
                                                                                          ttttttTATATTAAAAAAA‑AAAAAAAAAAAAAAACACTT‑‑‑AA‑A‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                <  1:4410994/128‑1 (MQ=255)
                                                                                           ttttttATCTTCAAAAAT‑AAAAAAAAAAAAAACCCCTT‑‑‑AA‑A‑AAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                              <  1:7321251/125‑1 (MQ=255)
                                                                                             ttttATATTCAAAAAA‑AAAAAAAAAAAAAAAACCTT‑‑‑AA‑A‑AAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                            <  1:9459323/127‑1 (MQ=255)
                                                                                             gtttataataaaaaaa‑aaaaaaaaaaaaaaCCCC‑‑TTAAA‑A‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                              <  2:7228146/116‑1 (MQ=255)
                                                                                                tatattaaaaaaa‑aaaaaaaaaaaaATCCC‑‑ATTAAA‑A‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                           <  1:3137819/119‑1 (MQ=255)
                                                                                                   tttaaaaaaT‑AAAAAAAAAAAAATAACATT‑‑‑AA‑A‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                       <  2:1199557/122‑1 (MQ=255)
                                                                                                    ttaaaaaaa‑aaaaaaaaaaaaaaACCC‑‑TTAAA‑A‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                       <  1:7612031/123‑1 (MQ=255)
                                                                                                    ttCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATTAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAATCTATTTATAAAAATAACATTATAAAACAAAATTTATTTTTAAAAAAAGatttagaata                       >  1:8447852/1‑120 (MQ=255)
                                                                                                     aaaaaaaT‑AAAAAAAAAA‑AATCCCCTT‑‑‑AA‑A‑AATT‑‑‑AAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata                 <  2:7377978/124‑1 (MQ=255)
                                                                                                      aaaaaaT‑AAAAAAAAAAAAAAACAC‑ATTAAA‑A‑AATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAATCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                      <  1:1833312/125‑1 (MQ=255)
                                                                                                        aaaaa‑aaaaaaaaaaCAATCCC‑‑ATAAAA‑A‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata                   <  1:4146289/127‑1 (MQ=255)
                                                                                                           aaaaaaaaaaaaaCAATCCCC‑‑TTAAA‑A‑AAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata               <  1:9304457/125‑1 (MQ=255)
                                                                                                            aaaaaaaaaaaaaaATTACATTAAAAA‑T‑TAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatat                  <  1:3949783/126‑1 (MQ=255)
                                                                                                                aaaaaaaaCAATCCCCTT‑‑‑AA‑A‑AATTAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAGTATTTATTAAAATACAATATATAACAAAATTTAAATTTTAAAAAAACAAATTTAAATaatataaatata           >  1:2093475/1‑128 (MQ=255)
                                                                                                                                |                                                                                                                             
AAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑A‑AATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATA  >  CP016816/202358‑202608

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑