Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4870T.36.1% 706.0 / inf 851intergenic (+265/‑410)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base T (180/279);  new base . (81/178);  total (336/515)
Fisher's exact test for biased strand distribution p-value = 3.58e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.52e-06

Only 100 of 908 total aligned reads displayed.

AATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑C‑TTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAAAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAA‑GATATTGACATAATATATATCTAATATATATAATACTA  >  CP016816/202369‑202614
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aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑C‑TTAACAAAT‑AAAAAAAAAACAAACACCATaaaaaaaaaa                                                                                                                           >  1:6309285/1‑126 (MQ=255)
 ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGCTCCTCGTGATCTATTTTTTTATTTGTTTAT‑C‑TTCACAAAT‑AAAAAAAAAACAATCACC‑‑Ttaaaatat‑aaaa                                                                                                                       >  2:8609081/1‑128 (MQ=255)
 ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑C‑TTCACAATT‑AAAAAAAAAACAATACAC‑‑Ttaaaaatt‑aaaa                                                                                                                       >  2:1200055/1‑128 (MQ=255)
    ataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑C‑TTCACAAATAAAAAAAAAAACAATCACCTT‑‑‑AAAAAT‑aaaaaaa                                                                                                                    >  1:9238336/1‑128 (MQ=255)
     taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑C‑TTCACAAAT‑AAAAAAAAAACAATCCC‑‑ATTAAAAATT‑aaaaaaaa                                                                                                                   >  2:2072733/1‑128 (MQ=255)
         gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTAT‑A‑TTAACAAAT‑AAAAAAAAAAAAA‑‑‑ACAAATAAAAAAT‑taaaaaaaaaaaa                                                                                                              >  2:3405595/1‑128 (MQ=255)
         gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATCTTTTTATTTGTTTAT‑C‑TTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATT‑aaaaaaaaaaaa                                                                                                               >  2:2338458/1‑128 (MQ=255)
         gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGTGATCTATTTTTTTATTTGTTTAT‑C‑TAAAAAAAT‑AAAAAAAAAAAAAACCCAAT‑‑‑AAAAAT‑aaaaaaaaaaaaa                                                                                                              >  2:7731394/1‑128 (MQ=255)
          ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑C‑TTCACAAAT‑AAAAAAAAAACAATCCCC‑‑‑TAAAAAAT‑taaaaaaaaaaaaa                                                                                                             >  2:8677554/1‑128 (MQ=255)
          ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑C‑TTCACAAAT‑AAAAAAAAAACAATCAAC‑‑TTAAAAATT‑aaaaaaaaaaaaa                                                                                                              >  1:7875427/1‑128 (MQ=255)
          ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTATTGATCTATTTTTTTATTTGTTTAT‑C‑TTAACAAAT‑AAAAAAAAAACAATAAC‑‑‑ATAAAAAAT‑taaaaaaaaaaaaa                                                                                                             >  1:7473720/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTATATCCTCGTGATCTAATTTTTTATTTGTTTAT‑C‑TTCACAAAT‑AAAAAAAAAAAAAAACAAATT‑‑AAAAAT‑aaaaaaaaaaaaaaa                                                                                                            >  1:9110744/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑C‑TTCACAAAT‑AAAAAAAAAACAATCCCC‑‑‑TAAAAAAT‑taaaaaaaaaaaaaaa                                                                                                           >  1:4673924/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑C‑TTCACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAAAATT‑aaaaaaaaaaaaaaa                                                                                                            >  2:8002054/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑C‑TTCACAAAT‑AAAAAAAAAACAAAACCC‑‑TTAAAAATT‑aaaaaaaaaaaaaaa                                                                                                            >  1:7392052/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCTTGATCTATTTATTTATTTGTTTAT‑C‑TTCACAAAT‑‑AAAAAAAAACAATCCC‑‑ATTAAAAATT‑aaaaaaaaaaaaaaaa                                                                                                           >  1:5531798/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTATATTATTAATTTAT‑C‑TTCACAAAT‑AAAAAAAAAACAAACC‑‑‑AAAAAAAAAT‑aaaaaaaaaaaaaaaa                                                                                                           >  2:455234/1‑128 (MQ=255)
             aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑C‑TTCACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAAAATT‑aaaaaaaaaaaaaaaa                                                                                                           >  2:7434870/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑C‑TTCACAAAT‑AAAAAAAAAACAAAACCC‑‑ATAAAAAAT‑aaaaaaaaaaaaaaaaa                                                                                                          >  2:8339244/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCCCGTGATCTATTTTTTTATTTGTTTAT‑C‑TTCACAAAT‑AAAAAAAAAAAAATCCCC‑‑TAAAAAAAT‑aaaaaaaaaaaaaaaaa                                                                                                          >  2:3585271/1‑128 (MQ=255)
               tttaattaaAAAAAAATAAATATAAAAATTTATTTAATTTATATACTTTTTTTTTTTTTTTTTTTTTTTTTAT‑T‑TTAAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATT‑aaaaaaaaaaaaaaaaaa                                                                                                         <  2:9463212/127‑1 (MQ=255)
               gTTTATTAAAAAAACATAAAATTTATAATTATTAAAATTTATATCCTACTTATAAATTTTTTTATTTTTTAAA‑A‑TTAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATT‑aaaaaaaaaaaaaaaaaa                                                                                                         <  1:6095501/128‑1 (MQ=255)
                ttaattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCATGATATATTTTTTTAATTATTTAT‑A‑TTCAAAAAT‑AAAAAAAAAAAAATAAAAAT‑‑‑AAAAAT‑aaaaaaaaaaaaaaaaaaaa                                                                                                       >  2:1607513/1‑128 (MQ=255)
                 taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTAT‑C‑TTCAAAAAT‑AAAAAAAAAACAATAAC‑‑‑ATAAAAAAT‑taaaaaaaaaaaaaaaaaaaa                                                                                                      >  1:4891726/1‑128 (MQ=255)
                  aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑C‑TTCACAAAT‑AAAAAAAAAACAATCCCCTTAAAAATaaa‑aaaaaaaaaaaaaaaaaaa                                                                                                        >  2:1059130/1‑128 (MQ=255)
                    ttaaAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATTTTTTTATTTGTTTAT‑C‑TAAAAAAAA‑AAAAAAAAAAAAAAACC‑‑‑ATAAAAAAT‑aaaaaaaaaaaaaaaaaaaaaaaa                                                                                                   >  2:5112586/1‑125 (MQ=255)
                    ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTAT‑A‑TTCACAAAT‑AAAAAAAAAACAATCACC‑‑AAAAAAAAT‑aaaaaaaaaaaaaaaaaaaaaaa                                                                                                    >  2:4313260/1‑126 (MQ=255)
                     taaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTATTTAT‑C‑TTCACAAATAAAAAAAAAAACAATCAAC‑‑TAAAAAATT‑aaaaaaaaaaaaaaaaaaaaaaa                                                                                                    >  2:2467759/1‑126 (MQ=255)
                      aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑C‑TTCACAAAT‑AAAAAAAAAAAAATCACC‑‑TAAAAAATT‑aaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                  >  1:2475419/1‑124 (MQ=255)
                      aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑C‑TTCACAAAT‑AAAAAAAAAAAAATACC‑‑ATAAAAAATT‑aaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                  >  2:3138200/1‑124 (MQ=255)
                       aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑C‑TTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATT‑aaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                 >  1:8704062/1‑123 (MQ=255)
                        aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑C‑TTCACAAAT‑AAAAAAAAAACAATCCC‑‑ATTAAAAATT‑Aaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                >  2:7176682/1‑128 (MQ=255)
                        aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑C‑TTCACAAAT‑AAAAAAAAAACAAACCCC‑‑TTAAAAATT‑Aaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                >  2:3279927/1‑128 (MQ=255)
                          taaaataaaaataaaaAATATTAAAATTTATATACTAGTTATCTAATTTTTTATTTTTTTAT‑A‑TTAAAAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑‑‑TAAAAAAAAAAAAAAAAAACTAAaaacaaa                                                                                           <  1:1476294/124‑1 (MQ=255)
                           aacATAAACTTAATAATTATTAAAATTTAGATACTCGTTATCTATTTTTTTATTTTTTTAT‑C‑TTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATT‑aaaaaaaaaaaaaaactaaaaacaaactct                                                                                             <  1:8930848/126‑10 (MQ=255)
                           aCCATAAACATAAAAATAGTTAAAATGTAGATACTCGTTTTCTATTTTTTTATTTTTTTAT‑T‑TTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑‑‑TAAAAAAAAAAAAAAAAAACTAAaaacaaac                                                                                          <  1:4508060/128‑1 (MQ=255)
                             caaaaaaTTAAAAAATCTTATAATTTATATACTTGTTTTTTTTTTTTTTATTTTTTTAT‑A‑TTAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAAAAAT‑AAAAAAAAAAAAAAAAAAAAACTAAaaacaaa                                                                                           <  1:8621745/125‑1 (MQ=255)
                             cATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTAATTTTTTATTTGTTTAT‑C‑TTCACAAAT‑TAAAAAAAAACAATAACC‑‑TTAAAATA‑‑AAAAAAAAAAAAAAAAAAAAAATAAacacaaaa                                                                                          >  2:5024110/1‑127 (MQ=255)
                             aaTAAAATTAAAAATTTTTATAATTTATAAACTACAGATATAATTTTTTATTTTTTTAA‑C‑ATAAAAAAA‑AAAAAAAAAAAAAACCCC‑TTAAAAAATA‑AAAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                            <  1:4288531/127‑1 (MQ=255)
                              aTAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑C‑TTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAGAAAAACTAAAAACAAAct                                                                                         <  1:7274326/128‑1 (MQ=255)
                                 aaattataaatTATTATAATGTATATCATCCTGATATATTTTTTTATTTGTTTAT‑A‑TAAACAAAA‑AAAAAAAAAACAAACCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                      <  1:8189443/120‑1 (MQ=255)
                                  aaataataaATATTAAAAATTAAATACTCGTTAAATATTTTTTTATTTTTTTAA‑A‑TTAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                      <  1:8533935/125‑1 (MQ=255)
                                     taataaTTTTTATAATGTAGATCCTCTTTTTATATTTTTTTATTTTTTTAT‑A‑TTAAAAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                                <  2:9243721/128‑1 (MQ=255)
                                        aaatTATTATAATTTAAAACCACGTGTTTTATTATTTTATTTGTTTAT‑C‑TTAACAAAT‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaa                                                                              <  2:4919312/127‑1 (MQ=255)
                                            ttttttaATGTATATCCTTCTTATATATTTTTTTATTTTTTTTT‑A‑ATCAAAAAT‑AAAAAAAAAAAAAACCACTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAt                                                                           <  1:9500591/123‑1 (MQ=255)
                                            tCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑C‑TTCACAAAT‑AAAAAAAAAACAAGCCC‑‑ATTAAAAATT‑AAAAAAAAAAAAAAAAAAAAA‑TAAAAAAAAACAGTATTTATTaaatt                                                                           >  2:7945677/1‑126 (MQ=255)
                                              ttataaattttaTCCTTGTTATTTATTTTTTTATTTTTTTAT‑A‑TAAACAAAA‑AAAAAAAAAACAAACCCC‑TTAAAAATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAt                                                                           <  1:7782878/117‑1 (MQ=255)
                                                ataATTTATATCATAGTTATATTTTTTTTTATTTTTTAAT‑A‑TAAAAAAAA‑AAAAAAAAAAAAATCCCC‑TTAAAAATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTc                                                                         <  1:7622227/128‑1 (MQ=255)
                                                   ttttatattcttgTGATTTTTTTTTTTATTTTTTTAT‑A‑TTAAAAAAT‑AAAAAAAAAACAATCCC‑‑‑‑‑AAAAAAA‑ATTAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCta‑tta                                                                 <  1:6982051/116‑1 (MQ=255)
                                                   aattataatctagTGATATATTTTTTTATTTTTTTAT‑A‑ATAAAAAAA‑AAAAAAAAAAAAATCCCC‑TTAAAAATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCt                                                                      <  1:2431763/116‑1 (MQ=255)
                                                     gtttttcatatcgATTTATTTTTTTTTTTTTTTTT‑A‑TTATACAAT‑AAAAAAAAAAAAATTCCC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAATCTCTATTTCTTAAAATTCCCta‑tt                                                                  <  2:6349180/116‑1 (MQ=255)
                                                      tAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑C‑TTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACAATATGTATTAACATTcccatttaa                                                                 >  2:957242/1‑122 (MQ=255)
                                                       tattCCTCGTTATTAATTTTTTTATTTTTTTAA‑A‑TTAAAAAAA‑AAAAAAAAAACAAACCCCTT‑‑‑AAAAA‑‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATAc                                                              <  2:562859/125‑1 (MQ=255)
                                                        tatactctTGATCTTTTTTTTTATTTTTTTAT‑A‑TTCAAAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACca                                                            <  1:1157722/124‑1 (MQ=255)
                                                         tttcttgttttttATTTTTTTTTTTTTTTAT‑T‑TTTAAAAAA‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑TTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATAcc                                                             <  2:9363937/116‑1 (MQ=255)
                                                         tactttctgttttATTTTTTTTTTTTTTTAT‑T‑TTAAAAAAT‑AAAAAAAAAAAAATAACATTT‑‑AAAAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATAcc                                                             <  2:4755903/116‑1 (MQ=255)
                                                         attatttttttttatttttttattttttTTT‑A‑TTAACAAAT‑AAAAAAAAAAAAATACCATT‑‑‑AAAAAT‑‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACcac                                                           <  2:404598/116‑1 (MQ=255)
                                                          tacTCGTTATCTATTTTTTTATTTTTTTAT‑CATTAAAAAAA‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACca                                                            <  1:3222672/126‑1 (MQ=255)
                                                            tatttttatatttttttttttttttTATAA‑TTAAAAAAT‑AAAAAAAAAAAAATCACATT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTATATTTCTTAAAATTCCCTA‑TTATACcac                                                           <  2:8843142/117‑1 (MQ=255)
                                                              agtgataattttttttATTTGTTTAT‑A‑TTCAAAAAA‑AAAAAAAAAACAATCCCCAT‑‑‑AAAAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACattt                                                       <  2:6243426/119‑1 (MQ=255)
                                                                tGATATTTTTTTTTATTTTTTTAT‑A‑TTAAAAAAA‑AAAAAAAAAAAAATCAC‑‑ATTAAAAAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACattt                                                       <  1:1751075/128‑1 (MQ=255)
                                                                 tttatatttttttattttttTAA‑C‑TTAAAAAAT‑‑AAAAAAAAACAAAACCC‑ATAAAAATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACatttt                                                      <  1:1026212/124‑1 (MQ=255)
                                                                 tataaatttttttatttttttAT‑A‑TTAAAAAAT‑AAAAAAAAAAAAAACCCATT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACatttta                                                     <  1:9574356/123‑1 (MQ=255)
                                                                  ttatatttttttattttttTAT‑A‑ATAAAAAAA‑AAAAAAAAAAAAATACCC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACatttta                                                     <  1:5219978/125‑1 (MQ=255)
                                                                      atttttttattt‑ttttT‑A‑TTTTAAAAA‑AAAAAAAAAAAAATACC‑‑ATTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTAttttt                                                <  2:7366834/128‑1 (MQ=255)
                                                                      aTTTTTTTAATTTTTTAT‑C‑ATAAAAAAA‑AAAAAAAAAAAAAACACC‑‑TTAAAAAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACattttatttt                                                 <  1:2810962/128‑1 (MQ=255)
                                                                       tttttttattttttttt‑a‑ttAAAAAAA‑AAAAAAAAAAAAAAAACC‑CTTAAAAAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACattttatttt                                                 <  2:8089018/128‑1 (MQ=255)
                                                                        ttttttATTTTTTTAA‑A‑ATAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAAAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTaa                                              <  1:2195509/128‑1 (MQ=255)
                                                                         ttttttttttttTAT‑A‑TTTAAAAAT‑AAAAAAAAAAAAATACCCATT‑‑‑AAAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTaaa                                             <  1:536669/128‑1 (MQ=255)
                                                                         tttttAATTTTTTAA‑A‑TTAAAAAAT‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTaaa                                             <  1:8325962/128‑1 (MQ=255)
                                                                          ttttATTTTTTTTA‑A‑TTAAAAAAT‑AAAAAAAAAAAAATACACTT‑‑‑AAAAAT‑‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATa                                          <  1:3585271/128‑1 (MQ=255)
                                                                          ttttATTTTTTTAT‑C‑TTAAAAAAT‑AAAAAAAAAACAATCCCC‑‑TAAAAAATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTaaa                                             <  1:7742168/128‑1 (MQ=255)
                                                                          ttttATTT‑TTTAT‑A‑TTTAAAAAA‑AAAAAAAAAAAAAAAACC‑CTTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTaaa                                             <  1:1315819/128‑1 (MQ=255)
                                                                           ttttttttttttT‑A‑TTAAAAAAT‑AAAAAAAAAAAAATTCCATTT‑‑AAAAAT‑‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATa                                          <  2:8216592/128‑1 (MQ=255)
                                                                            ttATTTTTTTAT‑A‑TTAACAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAAAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTGAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATa                                          <  1:7235383/128‑1 (MQ=255)
                                                                               ttttttTAT‑A‑TTAAAAAAA‑AAAAAAAAAAAAAAACACTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAA‑Ga                                      <  1:4410994/128‑1 (MQ=255)
                                                                                ttttttAT‑C‑TTCAAAAAT‑AAAAAAAAAAAAAACCCCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAA‑Gata                                    <  1:7321251/125‑1 (MQ=255)
                                                                                   tttAT‑A‑TTAACAAAA‑AAAAAAAAAAAAAATACC‑CTTAAAAAAT‑‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAA‑GATAtt                                  <  1:7972019/128‑1 (MQ=255)
                                                                                     tttatttaataaaaa‑aaaaaaaaaaaaATACCATT‑‑‑AAAAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAA‑GATATTg                                 <  1:3082460/117‑1 (MQ=255)
                                                                                     tttaaataaaaaaaT‑AAAAAAAAAA‑AAAAACCATTAAAAATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAA‑Gata                                    <  1:6543852/117‑1 (MQ=255)
                                                                                         aattaaaaaaa‑aaaaaaaaaaCAAT‑CCAATTAAAAAATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAA‑GATATTGa                                <  1:9384989/121‑1 (MQ=255)
                                                                                          atttaaaaaT‑AAAAAAAAAAAAATATCATTT‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAA‑GATATTGACat                             <  1:50582/122‑1 (MQ=255)
                                                                                          aataaaaaaa‑aaaaaaaaaaCAATCAC‑‑ATTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAA‑GATATTGACa                              <  1:1962441/122‑1 (MQ=255)
                                                                                           ttaaaaaaa‑aaaaaaaaaaaaATAACC‑ATAAAAATAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAA‑GATATTGACa                              <  1:2581002/123‑1 (MQ=255)
                                                                                           ttCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAATCTATTTATAAAAATAACATT‑ATAAAACAAAATTTATTTTTAAAAAAA‑Gatttagaata                             >  1:8447852/1‑120 (MQ=255)
                                                                                            ttcaaaaT‑AAAAAAAAAAAAAAAACCCTATAAAATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAA‑TATATTGACa                              <  1:580915/124‑1 (MQ=255)
                                                                                            taaaaaaT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAA‑GATATTGACataata                         <  1:8101395/124‑1 (MQ=255)
                                                                                               aaaaa‑aaaaaaaaaaCAATCCC‑‑ATAAAAAATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAA‑GATATTGACataata                         <  1:4146289/127‑1 (MQ=255)
                                                                                                 aaT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAA‑‑AAAAACCAACTCTATTTTTTAAAAATACCTT‑TTTAACCCAATTTTTTTTTTAAATAAA‑GATATTGTaataattttta                     >  2:7594613/1‑123 (MQ=255)
                                                                                                  aT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAACAA‑‑AAAACAAAACTAAATTTATAAAATTACCCTT‑TTAAACCCCATTTTATTTTTAAAATAA‑TATATTGACataataatatt                    >  2:7301414/1‑123 (MQ=255)
                                                                                                  aT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAA‑TAAAAAAAAAATATATTTATTAAAATAAAATA‑TTATTCCAAATTTATTTTTTAAAAtaa‑aataataaaataaatatta                     >  2:8510320/1‑122 (MQ=255)
                                                                                                  aT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAA‑‑AAAAACAAAATATATTTATTAAAATACCATA‑TTATACAAAATTTTATTTTAAAAATAA‑AATATTTAAAAAatatataa                    >  1:8836476/1‑127 (MQ=255)
                                                                                                   t‑AAAAAATAAACAATTCCC‑‑TTAAAAATT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACAACATTTTATTTTTAAAATAA‑GATATTGACATAatatata                     <  1:8756373/128‑1 (MQ=255)
                                                                                                   t‑AAAAAAAAAACAATCCCC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAA‑‑AAAAACAAACAATAATTATTAAAATAAAATA‑ATAAAAAAAATTTTATTTTTAAAATAA‑GAAATTTAAATTatatatata                   >  1:8259796/1‑127 (MQ=255)
                                                                                                   aaaaaaaaaaaaaaATTACATTAAAAATTAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAA‑GATATTGACATAatat                        <  1:3949783/126‑1 (MQ=255)
                                                                                                             aaCAATCCCCTT‑‑‑AAAAAT‑T‑AAAAAAAAAAAAAAAAAAACAAAAAACATAC‑AAATGTGTTAAAATTACCGATTTAATCCAATTTATATTTTTAAAAAAA‑TAAATTTATATAatataaataaattataat          >  2:9040892/1‑118 (MQ=255)
                                                                                                              aaaaaatacccttAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAA‑GATATTGACATAATATATATCTAata              <  1:2989329/117‑1 (MQ=255)
                                                                                                                aaaataccattaaaaattaaaaaAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAA‑GATATTGACATAATATATATCTAatata            <  1:3372053/119‑1 (MQ=255)
                                                                                                                    acaatttAAAATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAA‑GATATTGACATAATATATATCTAATATATataa       <  1:6737616/124‑1 (MQ=255)
                                                                                                                       ccttaaaaatt‑aaaaaAAAAAAAAAAAAAAAAATAAAAAAAAACTATATTAATTAAAATAAAATA‑TTATAACACATTATTTTATTAAAAAAATAATATT‑ACATAATTtttataaaatttataaaaaaa    >  2:2822471/3‑125 (MQ=255)
                                                                                                                         |                                                                                                                                  
AATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑C‑TTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAAAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTA‑TTATACCACATTTTATTTTTAAAATAA‑GATATTGACATAATATATATCTAATATATATAATACTA  >  CP016816/202369‑202614

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑