BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	203,895	1	.	T	58.6%	inf / inf	1266	intergenic (+279/+179)	JCVSYN2_00845/JCVSYN2_00850	lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand): ref base . (276/246); new base T (583/155); total (864/402)
Fisher's exact test for biased strand distribution p-value = 1.93e-22
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1587 total aligned reads displayed.

TTTTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTG‑‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TGTAAAAAT‑AAAA‑GTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATA  >  CP016816/203767‑204021

 tttAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTg                                                                                                                                          >  2:2830920/1‑128 (MQ=255)

  ttAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTG‑‑‑t                                                                                                                                      >  1:7912363/1‑128 (MQ=255)

    atatttatttaAAAAAAAAAATAAAAATTTTTTATTTAAATCCATTTGTAAAAAATCCTATGTTCTAGGCTTTTTATTATAATTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTG‑‑‑t‑tt                                                                                                                                   <  1:8791179/125‑1 (MQ=255)

     aTTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTG‑‑‑g‑ttt                                                                                                                                  >  2:7880319/1‑128 (MQ=255)

       tttttttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTAAGTTCTAGGCTTTTTATTATTCTTATCAACATTACAACGCTTTCAAAGTCTA‑TTTTTTAG‑G‑‑C‑‑TTG‑‑‑t‑ttttt                                                                                                                                >  2:5205067/1‑128 (MQ=255)

        ttttttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTG‑‑‑t‑tttttt                                                                                                                               >  2:7197664/1‑128 (MQ=255)

         ttttaATAAAAAAAAATAAAAATTTTTTATTAAAATCAATTTTTAAAAAAGCCTATTTTCATGGCTTTTTATTATACTTATAACCATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTG‑‑‑t‑ttttttt                                                                                                                              <  1:263141/128‑1 (MQ=255)

          ttttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTG‑‑‑t‑tttttttt                                                                                                                             >  1:7598630/1‑128 (MQ=255)

          ttttAT‑AAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGGA‑TTTTTTAG‑G‑‑C‑‑TTG‑‑‑t‑tttttttgt                                                                                                                            >  1:1810049/1‑126 (MQ=255)

              tataaaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTG‑‑‑t‑tttttttt‑t‑‑ttt                                                                                                                      >  1:2456924/4‑128 (MQ=255)

              ataAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTATGCTTTTTATTATACTTATCAACAATACAACGCTTTCAAAGTGTT‑TTTTTTAG‑G‑‑C‑‑TTG‑‑‑t‑tttttttt‑t‑‑ttt                                                                                                                      <  1:1114570/128‑1 (MQ=255)

              ataAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTG‑‑‑t‑tttttttt‑t‑‑ttt                                                                                                                      <  1:2216064/128‑1 (MQ=255)

               taAAAAAAAATAAAAATTTTTTTTTTAAATAATTTTTTAAAAAATCCTATTTTTTATTGTTTTTTTTTTAATTTTAAAAATTTAAAAGCTTTTAATTTGTT‑TTTTTTTT‑T‑‑G‑‑TTG‑‑‑t‑tttttttt‑t‑‑tttt                                                                                                                     <  2:4088163/128‑1 (MQ=255)

               taAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑T‑‑C‑‑TTG‑‑‑t‑tttttttt‑t‑‑tttt                                                                                                                     >  2:3232683/1‑128 (MQ=255)

               taAAAAAAAATAAAAATTTTTAATTAAAAACATTTTTTAAAAATTAAAATTTTATAGTTTTTTAATATTAATTAACAAAATAAAAAAGCTTTTAAATTTTA‑TTTTTTAT‑G‑‑A‑‑Ttt‑‑‑t‑tttttttt‑t‑‑tttt                                                                                                                     <  2:2410322/128‑1 (MQ=255)

                aaaaaaaaaTAAAAATTTTTCATTTAAAGCCATTTTTAAAAAATCCTATTTTCTATGCTTTTTATTATACTTATAAACATTACAACGCTTTCAAACTGTA‑TTTTTTAG‑G‑‑C‑‑TTG‑‑‑t‑tttttttt‑t‑‑ttttt                                                                                                                    <  1:3441171/128‑1 (MQ=255)

                aaaaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCGTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTTG‑G‑‑C‑‑TTG‑‑‑t‑gttttttt‑t‑‑ttttt                                                                                                                    >  2:5917117/1‑128 (MQ=255)

                aaaaaaaaaTAAAAATTTTTAATTTAAATCCATTTTTAAAAAATCCTATGTTCTATGCTTTTTATTATAATTATCAAAATTAAAACGCTTTAAAAGTTTA‑TTTTTTAT‑G‑‑C‑‑TTG‑‑‑t‑tttttttt‑t‑‑ttttt                                                                                                                    <  1:6480732/128‑1 (MQ=255)

                aaaaaaaaaTAAAAATTTTTAATTTAAATCAATTTTTAAAAAATCATATTTTCTATGATTTTTTTTTTACTTATCAACATTACAACGATTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTG‑‑‑t‑tttttttt‑t‑‑ttttt                                                                                                                    <  1:1589304/128‑1 (MQ=255)

                 aaaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTG‑‑‑t‑tttttttt‑t‑‑ttttt‑t                                                                                                                  >  1:9445651/1‑128 (MQ=255)

                    aaaaataaaaatTTTTAATTTAAAGCCATTTGTAAAAAAGCCTATTTTCTAGGCTTTTTATTATACTTATCAACATTACAAATCTTTCAAAGTGTA‑TTTTTTAT‑G‑‑C‑‑TTG‑‑‑t‑tttttttt‑t‑‑ttttt‑ttat                                                                                                               >  1:7516278/1‑125 (MQ=255)

                      aaataaaaatTTTACATATAAAGCCATTTTTAAAAAAGCCTATTTTATTTGCTTTTTATTATACATATAAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTG‑‑‑t‑tttttttt‑t‑‑ttttt‑ttgtaa                                                                                                             <  2:5040186/128‑6 (MQ=255)

                         taaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTG‑‑‑T‑TGTTTTTT‑T‑‑TTTTT‑TTTTAAAAt                                                                                                          >  2:1614901/1‑128 (MQ=255)

                         taaaaatTTTTCATTTAAAGCCAATTTTAAAAAAGCCTATGTTCAAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTG‑‑‑‑‑TTTTTTTT‑T‑‑TTTTT‑TGTAAAAAT‑a                                                                                                        <  1:8859591/128‑1 (MQ=255)

                         taaaaaaTTTTTTTTTAAATCCAATTGTAAAAAAGCCTATTTTCTATGTTTTTTTTTTTAATTATAAACATTACAACCCTTTTAAAGTTTT‑TTTTTTAG‑G‑‑C‑‑TTT‑‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TGTAAAAAt                                                                                                          <  2:1112563/128‑1 (MQ=255)

                          aaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑A‑‑TTG‑‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TTTAAAAAtt                                                                                                         >  2:7325851/1‑127 (MQ=255)

                           aaattTTTTTATTTAAATCCATTTTTAAAAAATCCTATGTTATTTGATTTTTATTATAATTATCAACATTACAACGCTTTAAAATTGTA‑TTTTTTAT‑G‑‑CT‑TTT‑‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TGTAAAAAT‑a                                                                                                        <  2:3471247/128‑1 (MQ=255)

                           aaaatTTTTCATTTAAAGCCATTTGTAAAAAAGGCTATTGTATATGCTTTTTATTTTAATTAAACACATTTAAAAGATTTAAAAATGGA‑TTTTTTTG‑G‑‑G‑‑ATGA‑‑TATTTTTTTT‑T‑‑TTATT‑TGTaaaaaa                                                                                                          >  1:6302335/1‑127 (MQ=255)

                           aaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑T‑‑C‑‑TTG‑‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TTTTAAAAT‑aa                                                                                                       >  1:1022150/1‑128 (MQ=255)

                            aaatTTTTCATTTAAATCAATTTTTAAAAAATCCTATTTTATAGGTTTTTTATTAAAATTATAAACATTACAACGCTTTAAAAGTGTA‑TTTTTTAG‑G‑‑CTTTTT‑‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TGTAAAAAT‑a                                                                                                        <  1:7408389/128‑1 (MQ=255)

                            aaatTTTTAATTTAAAGCAATTTTTTAAAAAGTCTATGTTCTAGTCTTTTTATTATAATTTTTAAAATTACAACTCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑G‑‑TTGTT‑T‑TTTTTTTT‑T‑‑TTTTT‑TGTAAAAAT‑a                                                                                                        <  2:2249371/128‑1 (MQ=255)

                             aatTTTTTAATTAAAGAAATTTTTTAAAAATCCTTTTTTCTATGTTTTTTATTATTATTATAAACATTAAAAAGATTTAAAATTGTT‑TTTTTTTG‑GTTT‑‑TTT‑‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TGTAAAAAT‑aa                                                                                                       <  2:8740624/128‑1 (MQ=255)

                                ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑T‑‑C‑‑TTG‑‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TGTaaaaaa‑aaaataa                                                                                                  >  1:9316921/1‑125 (MQ=255)

                                ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTG‑‑‑T‑TTTTTTTT‑TTATTTTT‑TTTaaaaaa‑aaaat                                                                                                    >  1:3180360/1‑127 (MQ=255)

                                tattCATTAAAAGCACATTGTAAAAAATCCTATGTTCAAGGGTTTTTATTAAAAATATAAACAAAACACCGCATTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTG‑‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TGTAAAAAT‑AAAA‑GTa                                                                                                 <  2:8354230/126‑1 (MQ=255)

                                 tttaatttaaATCCATTTTTAAAAAAGCCTTTGTTATATGGTTTTTATTTTAATTATCAAAATTTAAACGGTTTAAAAGGGTA‑TTTTTTTT‑G‑‑CTTTTT‑‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TGTAAAAAT‑AAAA‑Gt                                                                                                  <  2:9027390/128‑1 (MQ=255)

                                         aaatcaaTTTTTAAAAAATCCTATGTTATATGTTTTTTATTATAATTATCAAAATTAAAACGCTTTAAAATTGTA‑TTTTTTTG‑G‑‑CTTTTT‑‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TGTAAAAAT‑AAAA‑GTAAGATTTg                                                                                          <  1:8421855/122‑1 (MQ=255)

                                          aatccATTTTTAAAAAATCATTTGTTTTATGCTTTTTTTTATAATTATAAAAATTACAACGCTTTCAAATTTTT‑TTTTTTAG‑G‑‑G‑‑TTGTT‑T‑TTTTTTTT‑T‑‑TTTTT‑TGTAAAAAT‑AAAA‑GTAAGATTTgg                                                                                         <  2:9376385/125‑1 (MQ=255)

                                          aatacATTTTTTAAAAATAATATGTTCTTTTTTTTTTATTATAATTATAAAAATTAAAAATCTTTAAAAGTTTA‑TTTTTTAG‑G‑‑CT‑TTT‑‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TGTAAAAAT‑AAAA‑GTAAGATTTGGa                                                                                        <  1:6660136/124‑1 (MQ=255)

                                          aaGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTG‑‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TTTATAAAT‑AAAT‑GTAATATTTGTAt                                                                                       >  1:5310897/1‑128 (MQ=255)

                                                 ttGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTGT‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TTTAAAAAT‑AAAA‑TTAATATTTTTATCAAcaa                                                                                 >  1:5559858/1‑126 (MQ=255)

                                                   gTAAAAAAGCCTATTTTATATGCTTTTTATTATAATTATACACATTACATCGTTTTCAAAGTGTA‑TTTTTTTG‑G‑‑CT‑TTT‑‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TGTAAAAAT‑AAAA‑GTAAGATTTGGATCAACCaaa                                                                               <  1:8148698/128‑1 (MQ=255)

                                                    tAAAAAATCCTATTTTATAGGATTTTTATTATACTTATAAACTTTAAAACGTTTTAAAATTTTT‑TTTTTTTG‑G‑‑CT‑TTT‑‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TGTAAAAAT‑AAAA‑GTAAGATTTGGATCAACCaaaa                                                                              <  1:1195429/128‑1 (MQ=255)

                                                     aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTGT‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TTTAAAAAA‑AAAA‑TTAATATTTGGATCAACCaaaaa                                                                             >  1:773635/1‑127 (MQ=255)

                                                      aaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTG‑‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TGTAAAAAT‑AAAA‑GTAAGATTTTGATAAACCAAAACta                                                                           >  2:120735/1‑128 (MQ=255)

                                                       aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTGT‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TTTAAAAAT‑AAAA‑TAAAAATTTGATTAAACAAAAAAta                                                                           >  2:7643511/1‑128 (MQ=255)

                                                       aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTGT‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TTTAAAAAT‑AAAA‑ATAAAATTTGGATAAAACaaaattt                                                                           >  2:5619046/1‑125 (MQ=255)

                                                       aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTGT‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TGTAAAAAA‑AAAA‑TTAATATTTTGATAAAACaaaaaat                                                                           >  1:4755438/1‑125 (MQ=255)

                                                       aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTGT‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TGTAAAAAA‑AAAA‑TTAAAATATGTAACAACCtaaaaaa                                                                           >  1:4051279/1‑125 (MQ=255)

                                                           gCCTTTTTTCTAGGCTTTTTATTATACTTATTAAAATTTCAATGCTTTAATATTGTT‑TTTTTTAT‑G‑‑C‑‑TTG‑‑‑‑‑‑TTTTTTT‑T‑‑TTTTT‑TGTAAAAAT‑AAAA‑GTAAGATTTGGATCAACCAAAACTATATCaaa                                                                    <  2:2936696/128‑1 (MQ=255)

                                                              tagaacatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTGT‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TTTAAAAAT‑AATA‑TTAAGATTTGGATAAACCAAAACTATATCata                                                                    >  1:3284866/8‑126 (MQ=255)

                                                               ttgttttttttttttttttATAATTATAAAAAATAAAAAGCTTTTAAAGTGTT‑TTTTTTTG‑G‑‑G‑‑TTGTT‑T‑TTTTTTTT‑T‑‑TTTTT‑TGTAAAAAT‑AAAA‑GTAAGATTTGGATCAACCAAAACTATATCaaa                                                                    <  1:7821034/117‑1 (MQ=255)

                                                               attttttatgCTTTTTATTATAATTTTGAACATTATAAATCTTTTAAAGTGTT‑TTTTTTTG‑G‑‑G‑‑TTGT‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TGTAAAAAT‑AAAA‑GTAAGATTTGGATCAACCAAAACTATATCaaaa                                                                   <  2:7957715/119‑1 (MQ=255)

                                                                tGTTCTAGGCTTTTTATTATACTTATCAACATTACAACTCTTTAAAAGTGTA‑TTTTTTAT‑G‑‑A‑‑TTGA‑‑T‑TTTTTTTT‑T‑‑TTTTTATTTAAAAAT‑AAAA‑TTAATATTTTTAT‑AAACAAAAATATTTaaaaaa                                                                  >  2:6217455/1‑128 (MQ=255)

                                                                gaacatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTGTT‑T‑TTTTTTTT‑T‑‑TTTTT‑TTTAAAAAT‑AAAA‑TTAAATTTTGGATAAACAAAAAAAatattatag                                                                   >  2:8086346/6‑123 (MQ=255)

                                                                  acatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTGT‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TGTAAAAAT‑AAAA‑GTAAGATTTGGATCAACCAAAAGTAGATCaaaaaaa                                                                >  1:3025843/4‑128 (MQ=255)

                                                                  acatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTG‑‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TGTAAAAAT‑AAAA‑TTAAAATTTGGTTCAACCAAAAATAAAACACAAAAAt                                                               >  2:8852280/4‑128 (MQ=255)

                                                                    cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTGT‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TTTAAAAAA‑AAAA‑TTAATATTTGGATACACCAAAAAATTAAAAAAAAAAtt                                                              >  1:9034644/1‑128 (MQ=255)

                                                                    cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑GTTTTTAG‑G‑‑C‑‑TTGT‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TTTAAAAAT‑AAAA‑ATTATAATTGTATAAACCAAAACTATTAAAAAAAAAtt                                                              >  1:3626103/1‑128 (MQ=255)

                                                                    atAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTG‑‑‑T‑TTTTTTTTAT‑‑TTTTT‑TGTAAAAAT‑AAAA‑GAAAGATTTGTTACAACAAATAATAATTAAAAAAAAtt                                                              >  1:6973496/2‑128 (MQ=255)

                                                                      tgtttttttATTATAATTTTAAAAATTTAAATGCTTTTAAATTTTA‑TTTTTTAT‑G‑‑CT‑TTT‑‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TGTAAAAAT‑AAAA‑GTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTaa                                                            <  2:7760419/124‑1 (MQ=255)

                                                                       ggCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTGTTTT‑TTTTTTTT‑T‑‑TTTTT‑TGTAAAAAA‑AAAA‑ATAAAATTTTGATAAACCAAAAATATAAAAAAAAAATTa                                                             >  1:7233037/1‑128 (MQ=255)

                                                                        gattttttttATATTTATAAAAATTAATACGTTTTCAAATTTTT‑TTTTTTAT‑G‑‑T‑‑TTG‑‑‑‑‑TTTTTTTT‑T‑‑TTTTT‑TGTAAAAAT‑AAAA‑GTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTaaaaaa                                                        <  2:4349794/126‑1 (MQ=255)

                                                                          tttttATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTGT‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TTTAAAAAT‑AAAA‑GTAAGATTTGGATCAAACAAAACAATAACAAAAAAAATaaaaaa                                                        >  2:7522115/1‑128 (MQ=255)

                                                                            tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTGT‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TTTAAAAAT‑AAAA‑TTAATATTTTGATAAACCAAAAATATAAAAAAAAAATTaaaaaaaa                                                      >  2:3762267/1‑128 (MQ=255)

                                                                            tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTG‑‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TTTAAAAAT‑AAAA‑TTAAGATTTGGATAAACCAAAAATATTtaaaaaaaattaaaaaaaat                                                     >  1:8300790/1‑128 (MQ=255)

                                                                             ttattaTACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTGT‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TGTAAAAAT‑AAAA‑GTAAAATTTTGATAAACAAAAAAAATATATAAAAAATTAAAAAAAAt                                                     >  1:578712/1‑128 (MQ=255)

                                                                              tttttttattattaAAATTACAAGTTTTTAAAATTGTT‑TTTTTTTG‑T‑‑G‑‑TTT‑‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TGTAAAAAT‑AAAA‑GTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAAtag                                                   <  2:1022150/120‑1 (MQ=255)

                                                                              tattatACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTGTTTT‑TTTTTTTT‑T‑‑TTTTT‑TTTTAAAAA‑AAAA‑TTAAAATTTGGATAAACCAAAAATATATAAAAAAAATAaaaaaaaa                                                      >  1:7150518/1‑128 (MQ=255)

                                                                                ttatACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTGTTTT‑TTTTTTTT‑T‑‑TTTTT‑TTTAAAAAA‑AAAA‑TTAATATTTTGATAAAAAAAAAATATATAAaaaaaaataaaaaaaata                                                    >  2:6901363/1‑128 (MQ=255)

                                                                                ttatACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTG‑‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TTTAAAAAA‑AAAA‑TTAAGATTTTGATAAACCAAAAATATATAAAAAAAATTaaaaaaaaaattt                                                 >  2:4890816/1‑123 (MQ=255)

                                                                                  ttatttttaaaaaTTAAAAAGATTTTAAATTTTT‑TTTTTTTT‑G‑‑T‑‑TTG‑‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TGTAAAAAT‑AAAA‑GTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAAtagttta                                               <  1:9148813/116‑1 (MQ=255)

                                                                                    aCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTGTT‑T‑TTTTTTTT‑T‑‑TTTTT‑TTTAAAAAT‑AAAA‑TTAATATTTGGATAAACCAAAAAAATAAAAAAAAAATTAAAAAAAAtatttta                                               >  1:5193021/1‑128 (MQ=255)

                                                                                       tATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTG‑‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TTTAAAAAT‑AAAATTTAATATTTGTA‑AAACCAAAAAAAATAAAAAAAAAATAAAAAAAAtattttttttgt                                          >  1:801873/1‑122 (MQ=255)

                                                                                        aTCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTGT‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TTTTAAAAA‑AAAA‑ATAAAATTTTTAAAAACAAAAAAAAAAAAAAAAAAATTAAAAAAAAaaattttatttt                                          >  2:4664954/1‑122 (MQ=255)

                                                                                        aTCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTG‑‑‑‑‑TTTTTTTT‑T‑‑TTTTT‑TGTAAAAAT‑AAAA‑GTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGGTTATTTGAGt                                        >  2:8577834/1‑128 (MQ=255)

                                                                                         tCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTGT‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TGTAAAAAT‑AAAA‑GTTAGTTTTTGGTCAAACAAAACAATATCAAAAAAATTAAAAAAAAatttttagttagg                                         >  2:9153339/1‑125 (MQ=255)

                                                                                            aaatttaaaatcTTTCAAATTTTA‑TTTTTTA‑‑G‑‑T‑‑TTT‑‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TGTAAAAAT‑AAAA‑GTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCa                                    <  2:9488369/117‑1 (MQ=255)

                                                                                            aaaTTAAAACGCTTTAAAATTGTA‑TTTTTTTGTG‑‑T‑‑TTT‑‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TGTAAAAAT‑AAAA‑GTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGttt                                      <  2:8189603/126‑1 (MQ=255)

                                                                                               ttACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTGTT‑T‑TTTTTTTT‑T‑‑TTTTT‑TGTTAAAAT‑AAAA‑ATAATATTTGTAAAAAACAAAAATTTTTAAAAAAAATTAAAAAAAAaaatttatattattttaa                                    >  1:5963999/1‑117 (MQ=255)

                                                                                                  taatgCTTTCTAATTTTATTTTTTTTG‑A‑‑T‑‑TTT‑‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TGTAAAAAT‑AAAA‑GTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGCTTCAAATc                                <  2:2043400/124‑1 (MQ=255)

                                                                                                    aCGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTGTT‑T‑TTTTTTTT‑T‑‑TTTTT‑TTTAAAAAA‑AAAA‑GTAATATTTTGAAAAAACAAAAATATAAAAAAAAAATTAAAAAAAAAATTTTATTTGATTTTAAAAtat                               >  1:2062353/1‑126 (MQ=255)

                                                                                                    aCGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTGT‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TGTAAAAAT‑AAAA‑GTAAGATTTGGATAAACCAAAAATATATAAAAAAAATTAAAAAAAATATTTTATTTAAGTTTaaaaaaga                              >  1:4394937/1‑124 (MQ=255)

                                                                                                      gCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTGTT‑T‑TTTTTTTT‑T‑‑TTTTT‑TTTAAAAAT‑AAAA‑TTAATATTTTGATAAACAAAAAATTTATAAAAAAAATTAAAAAAAATAATTTATTTTATTTTAAAAtattc                             >  1:610255/1‑124 (MQ=255)

                                                                                                      gCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTGT‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TTTAAAAAT‑AAAA‑ATAAAATTTTGAAAAAACAAAAAATTATAAAAAAAATTAAAAAAAATTTTTTATTTTAGTTTAAAAtaaaaa                            >  1:2863741/1‑123 (MQ=255)

                                                                                                       cTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTG‑‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TTTTAAAATAAAAA‑GTAAGAATTTGATCCACCAAAAAATTAAAAAAAAAATTAAAAAAAATATTTTAGTTTATTTTaaaaaatgaat                           >  1:5041389/1‑121 (MQ=255)

                                                                                                        tttCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTGTT‑T‑TTTTTTTT‑T‑‑TTTTT‑TTTAAAAAT‑AAAA‑GTAATATTTGGATAAACCAAAACTATATAAAAAAAATTAAAAAAAAAATTTTATTTGATTTTCAAATATGCaa                           >  1:9597097/1‑127 (MQ=255)

                                                                                                        tttCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTGT‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TGTAAAAAT‑AAAA‑GTAAGATTTGGATCAACCAAAACTATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGAata                          >  1:1432353/1‑128 (MQ=255)

                                                                                                         ttCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTGTT‑T‑TTTTTTTT‑T‑‑TTTTT‑TTTAAAAAT‑AAAA‑TTAATATTTGGATCAACCAAAAAAATATAAAAAAAATTAAAAAAAATTTTTTATTTGAGTTTCAAATATGCata                          >  1:2347214/1‑128 (MQ=255)

                                                                                                         ttCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTGT‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TTTAAAAAA‑AAAA‑TTATAATTTGGATAAACCAAAAATATATAAAAAAAAATTAAAAAAATATTTTTTGTGATTTTAAAATATgaaaaa                         >  1:4910251/1‑123 (MQ=255)

                                                                                                          tCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTGTT‑T‑TTTTTTTT‑T‑‑TTTTT‑TTTAAAAAA‑AAAA‑TTAATATTTGGAAAAACAAAAAATATATAAAAAAAATTAAAAAAAAAAATTTATTTAAGTTTAAAAACTGAatat                         >  1:73179/1‑128 (MQ=255)

                                                                                                          tCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTGT‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TTTTAAAAT‑AAAA‑ATAATATTTTGATAAAACAAAAAAATATAAAAAAAATTAAAAAAAAAAGTTTATTTTTGTTTAAAATATGCataat                        >  2:2600646/1‑126 (MQ=255)

                                                                                                            aaaGTGTA‑TTTTTTAG‑G‑‑C‑‑TTGT‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TTTAAAAAA‑AAAA‑TTAAGATTTGGATAAACCAAAAATATTTAAAAAAAATTAAAAAAAATATTTTTATTTATTTTAAAAAATGGAtatata                      >  2:6505967/1‑128 (MQ=255)

                                                                                                            aaaGTGTA‑TTTTTTAG‑G‑‑C‑‑TTGT‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TGTAAAAAT‑AAAA‑GAAAATTTTGGATCAACCAAAAAAATAAAAAAAAAATTAAAAAAAATATTTTAGTTTAGTTTCAAATAAGCatatatt                      >  2:9292151/1‑127 (MQ=255)

                                                                                                                 gtA‑TTTTTTAG‑G‑‑C‑‑TTGT‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TTTAAAAAA‑AAAA‑TTAAAATTTTGATCAACCAAAAAATAATAAAAAAAATTAAAAAAAATATTTTATTTGAGTTTCAAATCAGCaaataatttaaa                 >  1:8656169/1‑121 (MQ=255)

                                                                                                                     ttttttAG‑G‑‑C‑‑TTG‑‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TGTAAAAAT‑AAAA‑GTAAGATTTGGATCAACCAAAACTTTTTAAAAAAAATTAAAAAAAATAGTTTATTTGAGTTTCAAATGTGCATATATAGTACAAAgg             >  1:8515420/1‑128 (MQ=255)

                                                                                                                       ttttAG‑G‑‑C‑‑TTGTT‑T‑TTTTTTTT‑T‑‑TTTTT‑TTTAAAAAT‑AAAA‑TTTATATTTGGATAAACCAAAAATATATAAAAAAAATTAAAAAAAATATTTTAATTGTATTTAAAATCTGAATATATATTAAAAAgg             >  1:4609684/1‑128 (MQ=255)

                                                                                                                       ttttAG‑G‑‑C‑‑TTGT‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TTTAAAAAT‑AAAA‑GTAAGATTTGGATCAAACAAAACTTTATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATAGGCATAAATTGTACAAAggt            >  1:4155498/1‑127 (MQ=255)

                                                                                                                        tttAG‑G‑‑C‑‑TTGT‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TTTAAAAAT‑AAAA‑GTAAGATTTGGATAAACCAAAAATAAATAAAAAAAATTAAAAAAAATATTTTTTTTGAGTTTAAAATATGCATATATATTAAAAAGGaa           >  2:7389252/1‑128 (MQ=255)

                                                                                                                         ttAG‑G‑‑C‑‑TTGTT‑T‑TTTTTTTT‑T‑‑TTTTT‑TTTAAAAAT‑AAAA‑TTAATTTTTTGATAAAACAAAAATTTTTAAAAAAAATTAAAAAAAATATTTTAGTTTATTTTAAAATATAGATATATATTAaaaataaa           >  1:3831735/1‑124 (MQ=255)

TTTTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑G‑‑C‑‑TTG‑‑‑T‑TTTTTTTT‑T‑‑TTTTT‑TGTAAAAAT‑AAAA‑GTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATA  >  CP016816/203767‑204021

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`