Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816311,1490T.63.3% 478.8 / inf 544intergenic (‑72/‑242)JCVSYN2_01300/JCVSYN2_01305hypothetical protein/30S ribosomal protein S21
Reads supporting (aligned to +/- strand):  ref base T (139/60);  new base . (206/138);  total (345/199)
Fisher's exact test for biased strand distribution p-value = 2.09e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.33e-02

Only 100 of 693 total aligned reads displayed.

GTACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAA  >  CP016816/311022‑311276
                                                                                                                                   |                                                                                                                                
        tGTAAAAACTAAAACAAATTAACATAAAATTTTAATAATCTTTTTCATTTTAAACACACCATATTAAAAAATAAAATAAAAGTTAAATACTATTCAAAACATATATAACATACAATCAT‑‑‑‑tatatatat                                                                                                                          <  1:2757410/128‑1 (MQ=255)
            ttaaATAATATAAATGATATTAAAATTGTTATTAAATTTTTTATTTTAAACACACCTTATTAAAAAATAAAATAATTTTTACATACTATTCAAAACATATATAAAATACATTCAT‑‑‑‑tatatatatatat                                                                                                                      <  2:5174772/127‑1 (MQ=255)
            aaaaCTAATACTAATGTACTTAAATATGTAATTAACTTTTTGATTTTACACACCCCTTATAAAAAAATATAATACTTGTTACATACGATTAAAAACATATATAAAATACATTCAT‑‑‑‑tatatatatatat                                                                                                                      <  2:6175190/126‑1 (MQ=255)
                  aaTACAAAATAACTTATAATTGTAATTAACATTTTAATTTAAATAACAAATTATAAAAAAATAAAATAATAGTTACATATTATTAAAAAAATATATAACAAACATTCAT‑‑‑‑tatatatatatatatatat                                                                                                                <  2:4843744/128‑1 (MQ=255)
                   aaaaaaaataaCTTAAAATTGAAATTAACATTTTCATTTTTCACACCACTAATAAAAAAATAAAAAACTTTATACATACGATTCAAAAAATATATAACATACATTCAT‑‑‑‑tataaatatatatatatat‑a                                                                                                              <  1:8266594/119‑1 (MQ=255)
                    tctacaTGATCTTAAAAATGAAATTAACATTATCAAATTAGACACCCCTTATAAAAAATTAAAAAACTTGTTAGATTCGATTCTAAACATATATACCAAACATTCAT‑‑‑‑tatatatatatatatataa‑at                                                                                                             <  2:8354868/123‑1 (MQ=255)
                    tcaaaaTGAACATAAAATTGTAATTAACTTTTTCAATTTACACACCCCTTATTAAAAAATAAAATACTTTTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatatat‑at                                                                                                             <  1:6595675/125‑1 (MQ=255)
                         aTGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatatat‑atataat                                                                                                        >  1:9469325/1‑126 (MQ=255)
                          tcaaattAAAATATTATTTATCTTTTTCATTTTACACACCCCTATTTAAAAAATAAAAAAATAGTTACATAATATAAAAAAAATATATAACATACATACTT‑‑‑‑tatatatatatatatatat‑ataatgca                                                                                                       <  2:2191599/123‑6 (MQ=255)
                          tGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatatat‑atataatg                                                                                                       >  1:7538581/1‑125 (MQ=255)
                          tGAAATTAAAATTGTAATTAACTTATTAATTTTACACACCCCTTATATAAAAAAAAAAAAATTTTTACATAATAAACAAAAAATAAATAAAATAAATTCAT‑‑‑‑TATATAAATATATAT‑TATAATATATaa                                                                                                       >  2:2926196/1‑128 (MQ=255)
                            aaCTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatatat‑atataattca                                                                                                     >  1:2473255/1‑123 (MQ=255)
                            aaCTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatatat‑atataatgca                                                                                                     >  2:5390597/1‑123 (MQ=255)
                             aCTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatatat‑atataatgcaa                                                                                                    <  1:7732975/128‑7 (MQ=255)
                              cTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATTCATTCAT‑‑‑‑tatatatatatatatatat‑atataattcaat                                                                                                   >  1:6850440/1‑121 (MQ=255)
                               ttAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATACCATACATTCAT‑‑‑‑TATATATATATATATATAT‑ATATATAATGaaa                                                                                                  >  1:4319075/1‑128 (MQ=255)
                                taaaaattaaaatAAATTTTTAATTTTACACACACCTTATTAAAAAATAAAATAAATTTTACATAAGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATGCAatat                                                                                               <  1:6427774/116‑1 (MQ=255)
                                tAAAATTTTTAATATCTTTTTTATTTTACACACACCTTATTAAAAAATAAAATATTTGTTTTATACTATTCAAAACATATATAAAATACATTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATGCAatat                                                                                               <  2:6243430/128‑1 (MQ=255)
                                tAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATGCAatat                                                                                               <  2:7492488/128‑1 (MQ=255)
                                tAAAATTGTAATTAACTTTTTAATATTAAACACCCCTTATTAAAAAATAAAATAATTGTTACATACTATTAAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATGCAatat                                                                                               <  2:6745316/128‑1 (MQ=255)
                                   aaTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATTCAATATGTa                                                                                            >  1:2305019/1‑128 (MQ=255)
                                   aaTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATGCAATATTTa                                                                                            >  1:1329067/1‑128 (MQ=255)
                                    aTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATGCAATATGTaa                                                                                           <  1:5240396/128‑1 (MQ=255)
                                      tttAATTAACTTTTTCATTTTACACACACCTTATTAAAAAATATAATAATTGTTACATAAGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATAT‑ATATATAATGCAATATGTaa                                                                                           <  2:9057704/126‑1 (MQ=39)
                                        tAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATGCAATATCTAAAtca                                                                                       >  1:499455/1‑126 (MQ=255)
                                         aaTTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATTCAATATGTAAATGaa                                                                                      >  2:1329427/1‑128 (MQ=255)
                                         aaTTAACTTTTTCATTTTACACACACCTTATTAAAAAATAAAATAATTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATAT‑ATATATAATGCAATATGTAAATg                                                                                        <  1:7881467/128‑1 (MQ=255)
                                           tttaattttttATTTTATACAATATTTATTAAATAATAAAATAATTTTTACATAATATACAAAATATATATATAATAAATT‑A‑‑‑‑‑‑ATA‑ATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAata                                                                                  <  1:9594369/123‑1 (MQ=255)
                                             ttatttttCTTATTATATACCTATTATTTAAAAATAATATAAATTTTAAATAAGATTCAAAACATATATAACATAAATTAAT‑‑‑‑TATATATATATATATATAT‑ATATATAATGCAATATGTAAATGaaaa                                                                                    <  2:1677776/125‑1 (MQ=25)
                                              aCTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATAGTTGTTTAATACTATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATAT‑ATA‑A‑AATCAAATATTTAAATTAatatat                                                                                 >  1:3985387/1‑128 (MQ=255)
                                              aCTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAatat                                                                                 >  1:8633450/1‑128 (MQ=255)
                                              aCTTATTAATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTAAATACGATTCAAAAAATATATAAAATACATTCAT‑‑‑‑TATATATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAat                                                                                   <  2:665200/128‑1 (MQ=39)
                                                   ttatatttACACACCACTTATTAAAAAATAAAATACTTTTTAAATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGtat                                                                            <  2:6559003/123‑1 (MQ=255)
                                                      aTTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTataat                                                                         >  2:5577303/1‑128 (MQ=255)
                                                          tACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATTCAATATATAAATGAAAATATTTTataatataa                                                                     >  1:1849725/1‑125 (MQ=255)
                                                          tACACACCACTTATTAAAAAATAAAATAATTGTTACATACTATTCAAAACATATATAAAATACATTCAT‑‑‑‑TATATATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAg                                                                       <  1:8736153/128‑1 (MQ=255)
                                                           aaacacacCTTATTAAAAAATATAATACTTGTTACATACTAGTAAAAACATATATAACATACATTCTT‑‑‑‑TATATATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGc                                                                      <  2:9312528/126‑1 (MQ=255)
                                                            cacacCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATTAAATATGTAAATTAAAATATTTTAATATAGCAAc                                                                   >  2:6047983/1‑128 (MQ=255)
                                                            cacacCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATGAAATATGTAAATGAAAATATTATATAATAGCAAc                                                                   >  1:5442107/1‑128 (MQ=255)
                                                              cacCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATAT‑ATATA‑AA‑GCAATATTTATAATAAAATATGGTATAATATCAAcag                                                                 >  2:2615683/1‑126 (MQ=255)
                                                              cacCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATGCAATATATAAATGAAAGTATGTTATAATAGAAAcct                                                                 >  2:4266948/1‑127 (MQ=255)
                                                                ccccTTATTAAAAAATAAAATACTTGTTACATACGAGTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATAT‑ATATA‑AGT‑AAATATTTAACTGAAAAAATGGTACAATACAAACCGtt                                                               >  2:4989444/1‑128 (MQ=255)
                                                                     tattaAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATAT‑‑‑‑TATAA‑‑‑AATATATAACAGAAAATATGTTAAAATAGCACGCGTTtaaataata                                                      >  1:6165261/1‑121 (MQ=255)
                                                                     tattaAAAAATAAAAGACTTGTTACAGACGATTCAAATCATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATTCAATATTTAAATAAAAATATGTTATAATATCAACAGTATAGaa                                                          >  1:8878282/1‑128 (MQ=255)
                                                                       ttaAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATAT‑ATATA‑AA‑GCAATATGTAAATGAAAATATGATATAATAGCAAAAGTTTATaaat                                                        >  2:104059/1‑127 (MQ=255)
                                                                         aaaaaaTAAAATACTTGTTACATACGATTAAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATAT‑ATATA‑AAT‑CAATATGTAAATGAAAATATGTTATAATAGCAACAATTTATAAAGTa                                                      >  1:5699884/1‑128 (MQ=255)
                                                                           aaaataaaatACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATGCAATATGTATATGAAAATATTGTATAATATCAACATTTTATAAAGTaaa                                                    >  1:4761041/1‑128 (MQ=255)
                                                                            atataaaataTTTTTTATATACGATTAAAAAAATATTTAACATACATTTAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAAACTTTTATAAAGTaaaa                                                   <  2:183601/126‑1 (MQ=255)
                                                                             aataaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATTCAATATTTAAATGAAAATATGTTATAATAGAAAACTTTTATAAAGTaaaaa                                                  >  1:5818289/1‑128 (MQ=255)
                                                                             aataaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATGCAATATATAAATTAATATATTGTATAATAGAAACAGTTTATAAAGTaaaaa                                                  >  1:9084321/1‑128 (MQ=255)
                                                                              ataaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACAGTTTATAAAGTaaaaaa                                                 >  2:3694212/1‑128 (MQ=255)
                                                                                aaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATAT‑ATA‑ATAA‑‑‑AATATATAAAAAAAAATATTTTATTATATAAAAATTATATAAATAAAAAAAATat                                             >  2:6881097/1‑127 (MQ=255)
                                                                                aaaataCTTGTTACATACGATTCAAAACATATATAAAATACATTCAT‑‑‑‑TATATATA‑‑‑A‑ATAAAT‑ATATATAATTCAATATTTAAATTAAAATATTTTATAATATAAAAATAATATAAAGAAAAAAAATAg                                             >  1:3405594/1‑128 (MQ=255)
                                                                                 aaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatatat‑atat                                                                                                           <  2:8180293/69‑1 (MQ=255)
                                                                                 aaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATTCAATATGTAAATGAAAATATGTTATAATAGCAACATTTTATAAATTAAAAAAATa                                              >  2:7421218/1‑128 (MQ=255)
                                                                                 aaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATa                                              >  2:8900315/1‑128 (MQ=255)
                                                                                  aataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATAT‑ATATA‑AA‑GAAATATTTAAAAGAAAATATGGTATAATATCAACCGTTTATAAATTAAAAAAATat                                             >  2:8682317/1‑127 (MQ=255)
                                                                                     aCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATAT‑TTAT‑‑‑‑TGAAATATGTAAATTAAAATATGTTTTAATATCACGCTTTTATAAATAAAAAAAAtcttacat                                        >  2:7016644/1‑121 (MQ=255)
                                                                                     aCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATAT‑ATATATAATGAAATATTTAAATTAAAATATGTTATAATAACACCAGTTTATAATTTAAAAAAATatt                                            >  2:738298/1‑126 (MQ=37)
                                                                                     aCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATGCAATATATAAATTAAAATATTTTATAATAGCAACAATAAATAAAATAAAAAAAtttaaa                                          >  2:4422350/1‑123 (MQ=255)
                                                                                     aCTTGTTACATACAATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATTGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTaa                                          >  1:6310117/1‑128 (MQ=255)
                                                                                      cTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATGCAATATTTAAATGAAAATATGTTATAATATCAACCGTTTATAAATTAAAAAAATAGTaaa                                         >  1:1451502/1‑128 (MQ=255)
                                                                                       tttttACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatatat                                                                                                                <  1:5966062/56‑1 (MQ=255)
                                                                                       ttGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATAT‑ATATATAATTAAATATGTAAATTAAAATATTTTATAATATAAAAATTATATAAATTAAAAAAATa                                              >  1:4665773/1‑128 (MQ=19)
                                                                                       ttGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATAT‑ATAAATA‑‑‑‑AATATTTAAATAAAAATATTTTATAATATAAAAATTTTATAAATTAAAAAAATAGTAAatat                                      >  2:3503451/1‑128 (MQ=255)
                                                                                        ttttACATAATATTAAAAACATATATAAAATACATTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAata                                       <  2:7540670/126‑1 (MQ=255)
                                                                                          ttACATAAGATTCAAATAATATATAAAATACATTTAT‑‑‑‑TATATATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAata                                       <  2:949850/128‑1 (MQ=39)
                                                                                             cATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACAGTTTATAATGTAAAAATATAGAAAATAtacta                                  >  2:7748602/1‑128 (MQ=255)
                                                                                             cATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑‑‑TATATATATATATAT‑ATATATAATGCAATATTTAAATAAAAATTTGATAAAAAACAAACCGTATAAAAATAAAAAAAATATAAAATAAaatact                                >  2:3011517/1‑128 (MQ=255)
                                                                                              aTACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATAT‑ATATATAATGCAATATTTAAATGAAAATATGGTATAATAGAAAACTTTTATAAAGTAAAAAAATATTAAAtataat                                   >  2:4646081/1‑126 (MQ=39)
                                                                                                aCGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATAT‑ATATA‑AA‑GAAATATATAAATGAAAATATTGTATAATATCAACAGTTTATAAAGTAAAAAAATAGTAAAtataaaaatt                               >  1:3217828/1‑122 (MQ=255)
                                                                                                   aTTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAAACTTTTATAAAGAAAAAAAATAGTATATATACTACTTa                              >  2:1979639/1‑128 (MQ=255)
                                                                                                     tCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATAT‑A‑‑‑A‑AATGCAATATTTAAATAAAAATATTTTAAAATAAAAACAGTTTATAAAAAAAAAAAATAATAAATATAAAAAATATTTAca                        >  2:1184293/1‑127 (MQ=255)
                                                                                                     tCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATGCAATATGTAAATTAAAATATTTTATAATATAAACAGTTTATAAATTAAAAAAATAGTATATATAATACTttttaa                          >  1:7040796/1‑126 (MQ=255)
                                                                                                     tCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATGCAATATGTAAATTAAAATATTTTATAATAGAAAACTTTTATAAAGTAAAAAAATAGTAAATATAATACTTATTTa                          >  1:4166144/1‑128 (MQ=255)
                                                                                                      cAAAACATATATTACATACATTCAT‑‑‑‑TATATATATATATATATAT‑ATTTAT‑‑TTAAATATGTAAATGATAATATGTTATAATATATAAAGTTTATATAGTATAAAAATTTTAAATATAATAATTATTTaa                         >  1:206556/1‑127 (MQ=255)
                                                                                                      cAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATAT‑ATA‑ATAA‑‑‑AATATGTAATTGAAAATATGTTATAATATAAACATATTAAAAATAAAAAAAATATTATATATACTAattattatatc                       >  2:3172960/1‑123 (MQ=255)
                                                                                                      cAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATTTTATAATAGCAACCTTTTATAAAGTAAAAAAATAGTAAATATACTTCTTATTTAc                         >  2:5878989/1‑128 (MQ=255)
                                                                                                       aaatCATATATAACATAAATTCAT‑‑‑‑TATATATATATATATATAT‑ATATATATTGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTa                          <  1:3046564/128‑1 (MQ=255)
                                                                                                       aaaaCATATATAACATACATTCAT‑‑‑‑TATATATATATATATATAT‑ATATATAATGCAATATTTAAATGAAAATATTTTATAATATCAAGATTTTATAAATTAAAAAAATATTAAATATAATAATTATTTa                          >  1:1042323/1‑128 (MQ=37)
                                                                                                       aaaaCATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATAAAATATATAAATAAAAATTTTTTATAATATAAACATTATATAAAATAAAAAAATATTATATAATCTTCTTAttaaat                        >  2:4068493/1‑124 (MQ=255)
                                                                                                          aCATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATGCAATATTAAAATAAAAATATGGTATAATAGAAACCGTTTATAAAATAAAAAAATATTAAATATACTAATTATTAACtaat                     >  1:4486566/1‑128 (MQ=255)
                                                                                                           aatatatAAAATATATAATT‑‑‑‑TTTATATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACtaa                      <  2:8623521/127‑1 (MQ=255)
                                                                                                            atatatAACATACATTCAT‑‑‑‑TATATATATATATATATAT‑ATATATAATTAAATATTTAAATTAAAATATTTTATAATATCAACAGTTTATAAAATAAAAAAATAGTAAATATAATAATTATTTaataat                     >  2:9227306/1‑128 (MQ=37)
                                                                                                            atatatAAAATATATTAAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACtaataa                   <  2:241652/128‑1 (MQ=255)
                                                                                                             tatataACATACATTCAT‑‑‑‑TATATATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGTTATAATAGCAACAGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACtaata                    >  1:3657879/1‑128 (MQ=255)
                                                                                                              atataACATACATTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATaaaa                 <  2:7840489/128‑1 (MQ=255)
                                                                                                              atataACATACATTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATCAAATATGTAAATGAAAATATTTTATAATATAAAAAGTTTATATAGTAAAAAAATATTAAATATAATACTTATTTACTAATaaaa                 >  1:1650111/1‑128 (MQ=255)
                                                                                                               tataACATACATTCAT‑‑‑‑TATATATATATATATATAT‑ATA‑ATAA‑‑‑AATATATAAATTAAAATATTTTATAATATAAACCGTTTATAAAATAAAAAAATAGTATATATAAAAGTTATTTACAAATAAAAACt              >  2:3951638/1‑128 (MQ=255)
                                                                                                                ataACATACATTCAT‑‑‑‑TATATATATATATATATAT‑ATATATAATTCAATATGTAAATTAAAATATTTTATAATATCAACCGTTTATAAATTAAAAAAATAGTAAATATACTACTTATATAATAATaaaa                 >  2:37941/1‑128 (MQ=38)
                                                                                                                ataACATACACTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATTCAATATATAAATTAAAATATTTTATAATATCAACCGTTTATAAAATAAAAAAATAATAAATATACTAAATATTTAATAAAAAAATc               >  2:3258527/1‑128 (MQ=255)
                                                                                                                ataACATACACTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATAAAATATGTAAATGAAAATATTATATAATATCAAAATTTTATAAATTAAAAAAATATTAAATATACTAATTATATACTAAAAAAAta               >  2:3292160/1‑127 (MQ=255)
                                                                                                                 taAAATACATTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCt              <  2:8089006/128‑1 (MQ=255)
                                                                                                                   acatacatTCAT‑‑‑‑TATATATATATATATATAT‑ATATAAAA‑‑AAATATGTATATTAAAATATTTTATTATATCAAAATTTTATAAAGTAAAAAAATAAAAAATATACTAATTATTAAATAAAAAAATCTAt            >  1:7189502/1‑128 (MQ=255)
                                                                                                                   acatacatTCAT‑‑‑‑TAAATATATATATATATAT‑ATAAATA‑‑‑‑AATATGTAAATGAAAAAATATTATAATATAAACAGTTTATAAATAAAAAAAATAATAAATAAAATACATATTTAAAAATAAAATCTAttt          >  1:9291459/1‑128 (MQ=255)
                                                                                                                     atacatTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATTAAATATGTATTTTAATATATTTTTTAATAGCAACATTATATTAATAAAAAATATAGTTATTATAATAAGTATTTACTAATTAAATATAttt          >  2:2299269/1‑128 (MQ=255)
                                                                                                                     ataaatTTAT‑‑‑‑TATATATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTAt            <  1:738298/128‑1 (MQ=255)
                                                                                                                      tacatTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATGCAATATGTAAATTAAAATATGGTATAATAGCAACCTTTTATAAATTAAAAAAATATGAAATATACTACATTTTTACTAATAATATATAgttt         >  2:5442954/1‑128 (MQ=255)
                                                                                                                      tacatTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTAtttt         >  2:7199623/1‑128 (MQ=255)
                                                                                                                      tacatTCAT‑‑‑‑‑‑TATATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGAAAACTTTTATAAAATAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTAtttt         >  2:641865/1‑128 (MQ=255)
                                                                                                                                   |                                                                                                                                
GTACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAA  >  CP016816/311022‑311276

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑