Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816311,1500A.64.4% 523.2 / inf 549intergenic (‑73/‑241)JCVSYN2_01300/JCVSYN2_01305hypothetical protein/30S ribosomal protein S21
Reads supporting (aligned to +/- strand):  ref base A (143/51);  new base . (205/146);  total (348/201)
Fisher's exact test for biased strand distribution p-value = 3.92e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.16e-02

Only 100 of 693 total aligned reads displayed.

TACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAA  >  CP016816/311023‑311277
                                                                                                                                 |                                                                                                                               
     tttGTAATAACTATTAAAAATTAAATTAAAATTTTAATAAAATTTTTCATTTTACAAACCACTTATTAAAAAATAAAATAATTTTTACATAGGATTAAAAACATATATAACATACATTCAT‑‑tatatat                                                                                                                            <  2:6992383/127‑1 (MQ=255)
         taataaCTAATCAAAATTAAATTAAATTTTTAATTTAATTTTTTATTTTAAACACACATTATAAAAAAATAAAATACTTTTTACATAATATTCTAAACATATATATCATATATTCAT‑‑tatatatatat                                                                                                                        <  2:664548/128‑1 (MQ=255)
            taaCTAATAGAAATCAACATAAAAATGTAATTAAATATTTAATTTTATACACACCATATTAAAAAATAAAAAACTTTTTACATACTATTCAAAACATATATAACATACATTCAT‑‑tatatatatatata                                                                                                                     <  1:9426172/128‑1 (MQ=255)
             atataatataaaTGAAATTTAAATTTTAATTAAATATTTAATTTTACACACACCTTATTAAAAAATAAAATAATTGTTACATACTATTCAAAAAATATATAACATACATTCAT‑‑tatatatatatatat                                                                                                                    <  2:3002387/119‑1 (MQ=255)
             aaatAATACAAATGTACTTAAAATTGTAATTAAATTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatat                                                                                                                    <  2:3947714/125‑1 (MQ=255)
               attatacAAATTATCTTTATATTGTTATTAACTTTTTCATTTTACACAACCCTTATTAAAAAATAAAATAATTGTTACATAAGATTAAAAACATATATAACATACATTCAT‑‑tatatatatatatatat                                                                                                                  <  2:7537126/122‑1 (MQ=255)
                tAATCAAAATTAACTTAAATTTGTAATTAACTTTTTCATTTTACACACAAATTATTAAAAAATAAAATAATTGTTACATACGATTCAAAACATATATAAAATACATTCAT‑‑tatatatatatatatata                                                                                                                 <  2:3792848/128‑1 (MQ=255)
                    aaaaattaaattTAAATTTTTATTAATATTTTTATTTTAAAAAACACATTTTAAAAAATAAAAAAATTTTTTCATACGATTCAAAACATATATATCATACATTCAT‑‑tatatatatatatatatatata                                                                                                             <  2:8301585/126‑1 (MQ=255)
                      aaaTTAACTTAAAATTGTAAATAACTTATTCATTTTACACACCCATTATTAAAAAATAAAATAATTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatata                                                                                                           <  1:447076/128‑1 (MQ=255)
                      aaaTGTACTAATAATTTTAAATAACTATTTCATATTACACACCCCTTATTAAAAAATAAAATACTTGTTAAATAAGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatata                                                                                                           <  1:1585047/128‑1 (MQ=255)
                       aaTGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatataa                                                                                                          >  1:7025223/1‑127 (MQ=255)
                       aaTGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACAAACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatataa                                                                                                          >  2:6728822/1‑127 (MQ=255)
                        aTGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatataat                                                                                                         >  2:2924461/1‑126 (MQ=255)
                          gAACTTAAAATTGAAATTAACTTTTTCAATTTACACACCCCTTATTAAAAAAAAAAATACTTGTTACATACGATGCAAAACATATAAAACAAACATTCAT‑‑taaatataaatatatatatataatgcaa                                                                                                       >  2:1968861/1‑122 (MQ=255)
                           aaattAAAATAGTAATTAACTTTTTAATTTTAAACAAACCTTATTAAAAAATAAAATAATTGTTACATAAGATTCAAAACATATATAAAATACATTCAT‑‑tatatatatatatatatatatataatgca                                                                                                      <  2:4064888/125‑6 (MQ=255)
                            aattAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatataatgcaa                                                                                                     <  1:7696732/126‑7 (MQ=255)
                            aCTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatttatatatatatataatgcta                                                                                                     >  1:4887079/1‑122 (MQ=255)
                              ttAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATAATGCaa                                                                                                   >  2:2517938/1‑128 (MQ=255)
                               aaaaaTATTATTTAAATTTTTAATTTTATACACACATTATTAAAAAATAAAATATTTTTTAAATAATATTAAAAAAATATATAACATAAATTAAT‑‑‑‑TATATATATATATATATATATATAATGCAatat                                                                                                <  1:5160921/127‑1 (MQ=255)
                                  aaTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatataaataaatatata                                                                                               >  2:3242358/1‑116 (MQ=255)
                                  aaTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATTTa                                                                                             >  1:1329067/1‑128 (MQ=255)
                                     tttAATTAACTTTTTCATTTTACACACACCTTATTAAAAAATATAATAATTGTTACATAAGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATAATGCAATATGTaa                                                                                            <  2:9057704/126‑1 (MQ=39)
                                     tGTAAATAACACTTTCATTTTACACACCCCAAATAAAAAAATAAAATACTTTATACATACGATACAAAACATATATAACATACATTCAA‑‑TATATATATATATATATATATATATAATgaatgtatgtt                                                                                            <  1:8846592/128‑11 (MQ=25)
                                       tatttAACTTTTTCATTTTACACACACATTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGa                                                                                        <  2:1826811/125‑1 (MQ=255)
                                            taCTTTTTAATTTTACAAACCAATTATAAAAAAATTATATAATTGTTACATACGATACAAAACATATATAACAAACATTCAT‑‑‑‑‑‑‑‑TATATATATATATATATATAATGCAATATGTAAATGAAAATATGGt                                                                               <  2:4827102/127‑1 (MQ=255)
                                            aaatttttCATTTTACACACATTTTATTAAAAAATAAAATAATTTTTAAATTAGATTCAAAAAATATATAACATAA‑‑‑AT‑‑TAATTATATATATATATATATATAATGCAATATGTAAATGAAAATATGGt                                                                               <  1:2429371/125‑1 (MQ=255)
                                            aaCTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATA‑‑GAAATATGTAAATGAAAata                                                                                   >  2:7416038/1‑128 (MQ=255)
                                              cTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATTCAATATGTAAATGAAAatatt                                                                                 >  1:3216415/1‑127 (MQ=255)
                                              cTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATg                                                                                 >  1:7840489/1‑128 (MQ=255)
                                                 tttGATTTTAAACACTAATTATTAAAAAATATAATAATTGTTAGATACTATTATAAACATATATATCATACATTAAT‑‑‑‑‑‑‑‑TATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTataat                                                                          <  2:5561641/128‑1 (MQ=255)
                                                  ttCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGAAAATGAAAATATGGtat                                                                             >  1:7143912/1‑128 (MQ=255)
                                                     ataatACACACCCCTTATAAAAAAATAAAATACTAGTTACAAACGATTAAAAACATATATAACAAAGATTCAT‑‑‑‑TATATATATATATATATATATATAATGCATTATGTAAATGAAAATATGGTataat                                                                          <  2:7196690/124‑1 (MQ=255)
                                                     aTTTTAAACAAACATTATAAAAAAATAATATATTTGTTATATAATATTAAAAAAATATATAAAATACAT‑‑A‑‑TATTATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAg                                                                        <  1:6058780/128‑1 (MQ=255)
                                                      ttttAAACACACCTTATTTAAAAATAAAATAATTGTTATATAAGATTCTAAAAATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTataata                                                                         <  1:6407609/128‑1 (MQ=255)
                                                       tttACACACCCCTTATTATAATATATTATACTTGTTAAATACGATTCAAAATATATATAAAATAAATTTAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAg                                                                        <  2:3138846/128‑1 (MQ=255)
                                                       tttACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTataatat                                                                        >  1:7490328/1‑127 (MQ=255)
                                                       tttACACACCCCTTATTAAAAAATAAAATAATTGTTACATAAGATTAAAAACATAAATAACATACATTCAT‑‑TATATATATATATATA‑‑‑AATATAATGAAATATATATATTAAAATATTGAATAATAACa                                                                      >  1:8719465/1‑128 (MQ=255)
                                                        ttACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATAATGCTATATATAAATAAAAATATGGTataata                                                                         >  2:3489005/1‑128 (MQ=255)
                                                        ttACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATTCAATATGTAAAATAAAATATgagatcttaag                                                                       >  1:1847288/1‑118 (MQ=255)
                                                         tACACACCCCTTATTAAAAAATAAAATACTTGTAACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAAATAAATAATAAAATTAAAATATGTTataataaaa                                                                      >  1:4120934/1‑125 (MQ=255)
                                                          aaacacacCTTATTAAAAAATATAATACTTGTTACATACTAGTAAAAACATATATAACATACATTCTT‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGc                                                                       <  2:9312528/126‑1 (MQ=255)
                                                           cacacaaattattaAAAAATAAAATAATTTTTACATAAGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAAc                                                                    <  2:7828733/120‑1 (MQ=255)
                                                           cacacCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATATATAATGAAATATTTAAATGAAAATATGGTataataa                                                                        >  2:774543/1‑127 (MQ=39)
                                                            acaaatcatattaAAAAATAAATTATTTTTTACATAAGATTCAAAAGAAATATAACATACATTCT‑‑TTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAAcc                                                                   <  1:5814508/120‑1 (MQ=255)
                                                             cacCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATAATGAAATATGTAAATGAAAATATTGTATAATAGAAAc                                                                    >  1:4608611/1‑128 (MQ=255)
                                                             cacCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATAAAATATGTAAATGAAAATATGGTATAATAgaatcat                                                                  >  1:593591/1‑122 (MQ=255)
                                                                  cTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATAATCCAATATGTAAATCAAAATATGATTAAATAGCAACCGttt                                                               >  2:5846767/1‑128 (MQ=39)
                                                                  cTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATTGTATAATAGCAACCGATtag                                                             >  2:3661832/1‑127 (MQ=255)
                                                                  cTTATTAAAAAATAAAATACTTGTTACATAAGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTtat                                                             <  1:2263174/128‑1 (MQ=255)
                                                                   ttattaAAAAATAAAATACTTGTTACATACGAATCAAAACATATATAACATACATTCAA‑‑TATATATATATATATATATAATATCA‑‑‑AATATTTAATTGAAAAAATGATATAATACAAGACTTTTATaaa                                                          >  2:6022857/1‑128 (MQ=255)
                                                                   ttattaAAAAATAAAATAATTTTTATATAATATTAAAAACATATATAAAATATATTATT‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTta                                                              <  2:424300/128‑1 (MQ=255)
                                                                     attaAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATaaa                                                          <  1:3011354/128‑1 (MQ=255)
                                                                     attaAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATAAAATATATAAAATAAAATATTCTATAATATCAACAGTATATaaa                                                          >  2:1168058/1‑128 (MQ=255)
                                                                         aaaatTATAATACTTGTTAGATAATATTAAAAAAATATATAAAATACAATAAT‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGt                                                        <  1:6764899/128‑1 (MQ=37)
                                                                          aaaataaaatACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATTCAATATGTAAATGAAAATATGTTATAATAGCAACATTTTATAAAGTaaa                                                     >  1:5408856/1‑128 (MQ=255)
                                                                            aaaaaaataATTTTTTTATAATATTTAAAAAAAATATAAAATATATTTT‑‑TATTATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaaaa                                                   <  2:7317131/125‑1 (MQ=255)
                                                                             ataaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAAAGCAATATGTAAATGAAAATATTGTATAATAGCAACAGTATATAAATTaaaaaa                                                  >  2:8173827/1‑128 (MQ=255)
                                                                                aaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATa                                               >  2:8900315/1‑128 (MQ=255)
                                                                                aaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGAAATATGTAAATGAAAATATTTTATAATAGCAACAGTTTATAAAGTAAAAAAATa                                               >  1:8184558/1‑128 (MQ=255)
                                                                                 aataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAAAGAAATATTTAAAAGAAAATATGGTATAATATCAACCGTTTATAAATTAAAAAAATat                                              >  2:8682317/1‑127 (MQ=255)
                                                                                 aataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATTAAAATATTTTATAATAGCAACAGTTTATAAATTAAAAAAATat                                              >  2:6528046/1‑127 (MQ=255)
                                                                                    aCTTGTTAGATACGATTCAAAACATATATAACATACATT‑‑T‑‑TTTATATATATATATATATATATATAATGCAATATGTAAATGAAAATTTGGTATAATAGCAACCGTTTATATAGTAAAAAAATAGTaa                                           <  2:5436955/128‑1 (MQ=255)
                                                                                     cTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATTTAAATGAAAATATGTTATAATATCAACCGTTTATAAATTAAAAAAATAGTaaa                                          >  1:1451502/1‑128 (MQ=255)
                                                                                     atttttACATAATATTTAAAAAATATATAAAATACATTAAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTaaa                                          <  2:4408159/124‑1 (MQ=255)
                                                                                      ttGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAAAGCTATATGTAAAAGAAAATATGGTAAAATAAAAACAGTTAATAAAGTAAAAAAATATTAAat                                         >  1:2702545/1‑128 (MQ=255)
                                                                                       tGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGATATATGTAAATGAAAATATTTTATAATAGCAACAGTTTATAAAGTAAAAAAATATAAAata                                        >  2:3290379/1‑128 (MQ=255)
                                                                                       atttatataataTTCAAAACATATATAAAATATATT‑‑T‑‑AATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAata                                        <  1:4735648/117‑1 (MQ=255)
                                                                                        gTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAatat                                       <  2:7478964/128‑1 (MQ=255)
                                                                                        gTTAAATAAGATTCAAAAAATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTGTAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAatat                                       <  2:1639978/128‑1 (MQ=255)
                                                                                         ttACATAAGATTCAAATAATATATAAAATACATTTAT‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAata                                        <  2:949850/128‑1 (MQ=39)
                                                                                          tACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATTCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATAtac                                     >  2:4603425/1‑128 (MQ=255)
                                                                                           aCATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACAGTTTATAAAGTAAAAAAATATTAAATAtact                                    >  2:226047/1‑128 (MQ=255)
                                                                                            cATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATAtacta                                   >  1:3371619/1‑128 (MQ=255)
                                                                                             aTACTATTGAAAAAATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATAtactac                                  <  1:9533145/128‑1 (MQ=255)
                                                                                                ctaTTAAAAACATATATAAAATACATTAAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTa                               <  2:1329067/126‑1 (MQ=255)
                                                                                                cGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATAATTCAATATGTAAATGAAAATATGTTATAATAGCAACAGTTTATAAAGTAAAAAAATATTAAATAttcttat                                 >  2:6164260/1‑125 (MQ=39)
                                                                                                   ttCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATA‑‑‑AAATGAAATATTTAAATGAAAATAACATATAATAGCAACCGTTTATAAATAAAAAAAATAATAAAtataaaaaatattaac                          >  2:5172019/1‑116 (MQ=255)
                                                                                                      aaaaCATATATAACATACATTCAT‑‑TATATATATATATATATATATATATAATGCAATATTTAAATGAAAATATTTTATAATATCAAGATTTTATAAATTAAAAAAATATTAAATATAATAATTATTTa                           >  1:1042323/1‑128 (MQ=37)
                                                                                                         aCATATATAACATACATTCAT‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACta                        <  1:1979639/128‑1 (MQ=255)
                                                                                                          cATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCTATATTTAAATGAAAATATGGTATAATAGCAACCGTTTATAAATTAAAAAAATAGTAAATATAATACTTATTTACtaata                     >  2:2160512/1‑128 (MQ=255)
                                                                                                          cATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACtaata                     <  1:3924807/128‑1 (MQ=255)
                                                                                                           atatatAACATACATTCAT‑‑TATATATATATATATATATATATATAATTAAATATTTAAATTAAAATATTTTATAATATCAACAGTTTATAAAATAAAAAAATAGTAAATATAATAATTATTTaataat                      >  2:9227306/1‑128 (MQ=37)
                                                                                                           atatatAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATTGTATAATAGCAACCTTTTATAAATTAAAAAAATATTAAATATAATAGTTATTtaataataa                    >  2:8613089/1‑128 (MQ=255)
                                                                                                             atataACATACATTCAT‑‑TATATATATATATATATATATAATAAT‑‑‑ATATTTATATGAAAATATGTTATAATATAAACCTTTTATATATAAAAAAAATAGTAAATATACAAAATATATAAAAAAAAAATc                >  1:7301896/1‑128 (MQ=255)
                                                                                                             atataACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATaaaa                  >  1:9068032/1‑128 (MQ=255)
                                                                                                              tataACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAAt                 >  2:1025948/1‑128 (MQ=255)
                                                                                                               ataACATACATTCAT‑‑TATATATATATATAAATATATAATAA‑‑‑AATATATAAATAAAAATATGTTATAATATCAACCGTTTATAAAATAAAAAAATATTTAATATACTACTAATTTACTAAAAAAATCtt              >  2:6218281/1‑127 (MQ=255)
                                                                                                                tttacatattgcat‑‑tATATATATATATATATATATATATAATGCAATATGTAAATTAAAATATGGTATAATATCAACCGTTTATAAATTAAAAAAATAGAAAATATTCTACTTATTTACTAATAAAAt                 >  2:5377199/12‑128 (MQ=37)
                                                                                                                taACATACATTCAT‑‑TATATATATATATATATATATATATAATGAAATATTTAAATGAAAATATTTTATAATATCAAAAGTTTATAAATTAAAAAAATATTAAATATAATAATTATTTTATAATAAAAt                 >  1:5548573/1‑128 (MQ=25)
                                                                                                                 aaCATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATTAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTa              >  1:9278562/1‑128 (MQ=255)
                                                                                                                  acatacatTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGTTATAATAGAAAAATTTTATAAATTAAAAAAATATTAAATATAATACTTATTTAATAATAATATCTAt             >  1:3633998/1‑128 (MQ=255)
                                                                                                                  aaatacatTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAGTATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTAt             <  1:4266948/126‑1 (MQ=255)
                                                                                                                  aaataaaataat‑‑tATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATTGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCt               <  1:6278155/118‑1 (MQ=39)
                                                                                                                   catacatTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACAGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTAtt            >  1:6543385/1‑128 (MQ=255)
                                                                                                                    atacatTCAT‑‑TATATATATATATATATATATATAAATCAATATGTAAATGAAAATATTTTATAATAGAAACCGTTAATAAATTAAAAATATATTAAATATACTACTTATATAATAATAAAATCTAttt           >  2:8080468/1‑128 (MQ=255)
                                                                                                                    atacatTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACAGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTAttt           >  2:6803952/1‑128 (MQ=255)
                                                                                                                     tacatTCAT‑‑‑‑TATATATATATATATATATATATAATGAAATATGTAAATGAAAATATTTTATAATATCAAACGTTTATAAAGTAAAAAAATAGTAAATATAATACTTATTTACTAATAAAATATAtttt          >  2:2394310/1‑128 (MQ=255)
                                                                                                                      acatTCAT‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGTTATAATAGCAACAGTTTATAAAGTAAAAAAATATTAAATATAATAATTATTTAATAATAAAATATAttt           >  2:4986428/1‑128 (MQ=38)
                                                                                                                      acatTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATAAACTACTTATTTACTAATAAAATCTAttttt         >  2:6356916/1‑128 (MQ=255)
                                                                                                                            at‑‑tATATATATATATATATATATATATAATGCAATATGTAAATTAAAATATGGTATAATAGAAACAGTTTATAAAGTAAAAAAATAGTAAATATACTAATTATTTACTAATAAAATCTATAttaattt     >  1:85011/1‑128 (MQ=39)
                                                                                                                                 |                                                                                                                               
TACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAA  >  CP016816/311023‑311277

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: