New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 = 202486108 (0.060)260 (0.150) 65/252 45.9 67.3% intergenic (+264/‑411) JCVSYN2_00840/JCVSYN2_00845 hypothetical protein/lipoprotein
?CP016816 202490 = 145 (0.080)intergenic (+268/‑407) JCVSYN2_00840/JCVSYN2_00845 hypothetical protein/lipoprotein
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 350 total aligned reads displayed.

TAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATAT  >  CP016816/202367‑202617
                                                                                                                            |                                                                                                                                   
tAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGAAGATCCTCGTGATCTATTTATT‑TATTTGATTATCTAAACAAATAAAAAAAAAACAAAACCCATaaaaa‑aaa                                                                                                                                >  2:2471671/1‑128 (MQ=255)
   ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAATAAAAAAAAAACAATCACCtt‑‑‑aa‑aaat‑aaaaa                                                                                                                         >  1:3197339/1‑128 (MQ=255)
    taataGAGTTAAGGTTAATTAAAATACAATAAAATTAATAATTCTTATAATTTAGATCCTCGTGATCTATATAAT‑TATTATTTTATCTTCACAAAT‑AAAAAAAAACAATCACC‑‑‑TAAA‑AAAT‑taaaaaa                                                                                                                       >  1:1203542/1‑128 (MQ=255)
     aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAATAAAAAAAAAAACAAACAC‑ATtaaa‑aaat‑aaaaa                                                                                                                         >  1:3335139/1‑128 (MQ=255)
     aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTAGTTTATATTCACAAATAAAAAAAAAACAAAACCC‑‑Ttaaa‑aatt‑aaaaaa                                                                                                                        >  1:1158472/1‑128 (MQ=255)
      ataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTAT‑TATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCAATAaaaaa‑aaaa‑aaaaa                                                                                                                         >  2:312084/1‑128 (MQ=255)
       taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAATAAAAAAAAAACAATCACC‑‑TTAAA‑AATT‑aaaaaaaa                                                                                                                      >  2:1994171/1‑128 (MQ=255)
       taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTAT‑TATTTGTTTATCTACACAAATAAAAAAAAAAAAATACC‑‑AATAAA‑AAAT‑aaaaaaaa                                                                                                                      >  2:935117/1‑128 (MQ=255)
        agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCTTGATCTATATAAT‑TATTTGTTTATCTTCACAAATAAAAAAAAAACAATCACATT‑‑‑AA‑AAAT‑aaaaaaaaaa                                                                                                                    >  1:518697/1‑128 (MQ=255)
           tttAATGTTAATATAAAAACCAATAATATATAAAATCTTATAATGTATCTCCGCGGTTACTATTTTTT‑TTTTTTTTTATCTTAACAAAAAAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaa                                                                                                                  <  2:3841527/127‑1 (MQ=255)
            ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaa                                                                                                                 >  2:376524/1‑128 (MQ=255)
            ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAATAAAAAAAAAACAATCACC‑‑TTAAA‑AATT‑aaaaaaaaaaaaa                                                                                                                 >  2:761388/1‑128 (MQ=255)
             tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTT‑TATTTTTTTATCTTCACAAATAAAAAAAAAAAAAACACCTT‑‑‑AA‑AAAT‑aaaaaaaaaaaaaaa                                                                                                               >  2:1061279/1‑128 (MQ=255)
              tattttaaataaAATAACATAAAATTAAAAATTATTTAAATTTATATACACGTTTTATATTTTTT‑TATTTTTTTATATTAACAAATAAAAAAAAAACAATACCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaa                                                                                                               <  1:3544420/124‑1 (MQ=255)
              aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTAATTTAT‑AATTTTATTATCTTCACAAATAAAAAAAAAACAATAAAAAT‑‑‑AA‑AAAT‑aaaaaaaaaaaaaaaa                                                                                                              >  2:2331839/1‑128 (MQ=255)
              aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTAAAAA‑TTAT‑aaaaaaaaaaaaa                                                                                                                 >  2:451919/1‑128 (MQ=255)
              aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCATGATCTATTTATT‑TATATATTAAAATTAACAAATAAAAAAAAAACAAT‑‑ACAAATAAA‑AATT‑aaaaaaaaaaaaaaa                                                                                                               >  1:3081405/1‑128 (MQ=255)
              aaGGTTAATTAAAATACCATAAACTTAAAAATTCTTATAAAGTAGATCCTCGTGATCTAATTTAT‑AATATGTATAACTTCACAAATAAAAAAAAAACAAAACAC‑‑ATAAA‑AATT‑aaaaaaaaaaaaaaa                                                                                                               >  2:3534676/1‑128 (MQ=255)
                ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAATAAAAAAAAAACAATCACC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaaaa                                                                                                             >  1:2938570/1‑128 (MQ=255)
                ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTT‑TATTTGTATATCTTAACAAATAAAAAAAAAAAAAAAAC‑‑ATTAAA‑AATT‑aaaaaaaaaaaaaaaaa                                                                                                             >  1:358156/1‑128 (MQ=255)
                 tttaattaaAATAAAATAAAATTAATAATTATTAAAATTTTTATACTCTTTTTATATTTTTT‑TATTTTTTTATATTCACAAAAAAAAAAAAAAAAATCCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaaaaa                                                                                                            <  1:3158934/127‑1 (MQ=255)
                 gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTTTTTATCTTCACAAATAAAAAAAAAAAAAAAAC‑‑‑ATAAA‑AAAT‑aaaaaaaaaaaaaaaaaaa                                                                                                           >  2:220125/1‑128 (MQ=255)
                 gTTAATTAAAATAACATAAAATTAAAAATTAATAAAATTTTGATACTTTTTTTATATTTTTT‑TAATTTTTTATATTAACAAAAAAAAAAAAAAAAAACCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaaaaa                                                                                                            <  1:1287151/128‑1 (MQ=255)
                  ttaattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTAT‑TATTTGTTTATCTTCACAAATAAAAAAAAAAAAAAACCC‑‑ATAAA‑AATT‑aaaaaaaaaaaaaaaaaaa                                                                                                           >  1:3607508/1‑128 (MQ=255)
                  ttaattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATATTTT‑TATTTTTTTATCTTCACAAATAAAAAAAAAACAAT‑‑AAAATTAAA‑AATT‑aaaaaaaaaaaaaaaaaaa                                                                                                           >  1:1534056/1‑128 (MQ=255)
                   taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATATTTT‑TATTTGTATATCTTCAAAAATAAAAAAAAAACAATCCAATTAaaaa‑aaaa‑aaaaaaaaaaaaaaaaaa                                                                                                            >  2:2441219/1‑128 (MQ=255)
                    aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAATAAAAAAAAAACAATCACATTAAAAA‑Taaa‑aaaaaaaaaaaaaaaaaaa                                                                                                           >  1:982653/1‑128 (MQ=255)
                    aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAATAAAAAAAAAACAAACACC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaaaaaaaa                                                                                                         >  2:1545316/1‑128 (MQ=255)
                    aaataaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTTTTTATCTTCACAAATAAAAAAAAAAAAAACAAC‑‑‑AAAA‑AAAT‑aaaaaaaaaaaaaaaaaaaaaa                                                                                                        >  2:128951/4‑127 (MQ=255)
                     attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaaaaaaaaa                                                                                                        >  2:2943664/1‑127 (MQ=255)
                     attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaaaaaaaaa                                                                                                        >  1:3059642/1‑127 (MQ=255)
                          aaaaCCATAAACTTAAAAAATCTAATAATGTAGATCCTCGACATCTATTATTA‑TATTAGTTTATCTACACAAATAAAAAAAAAAAAAAACCC‑‑ATAAA‑AATT‑Aaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                   >  2:1900624/4‑128 (MQ=255)
                          aaTACCATAAACTTAATAATTCTTATAATTTAGATCCTCGTGATCTATTTTAT‑TATTTTTTTATCTTAACAAATAAAAAAAAAAAAAAACAC‑‑TTAAA‑AATT‑Aaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                   >  2:663052/1‑128 (MQ=255)
                          aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑Aaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                   >  2:1357550/1‑128 (MQ=255)
                          aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑Aaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                   >  2:3444236/1‑128 (MQ=255)
                          aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTAACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑Aaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                   >  1:3006111/1‑128 (MQ=255)
                          aaTAACATTAAATAATTAATTATTTTAATTTAGTACCATGTTTTCTATTTTTT‑TATTTTTTTATCTTCACAAAAAAAAAAAAAAAAATCCCC‑‑ATAAA‑AATT‑AAAAAAAAAAAAAAAAAAAAACTaaaa                                                                                                   <  1:2482517/128‑1 (MQ=255)
                                   aaattAATAAATATTAAAATTTATATACCCGTTATTTATTTTTT‑TAATTTTTAAAATAAAAAAAAAAAAAAAAAACAAACCCCTT‑‑‑AA‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTa                                                                                        <  1:1473473/125‑1 (MQ=255)
                                   aaattAAAAATTATTATAATTTATATACTATTTAAATATTTTTT‑TATTTTTTTATATTAAAAAAAAAAAAAAAAAAAAAACC‑‑ATTAAA‑AAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTa                                                                                        <  1:109832/125‑1 (MQ=255)
                                   aaCTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAAAAACaaaaaaacaaataa                                                                                          >  1:2057100/1‑120 (MQ=255)
                                        aataaaTCTTATTATTTTCTTACTCGTGATAAATTTTTT‑TATTTGTTTATCTT‑ACAAAAAAAAAAAAAAAAAAACCCCTT‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCt                                                                                   <  1:3374986/128‑1 (MQ=255)
                                         ataataTTTATAATTTATATCCTCGTTATTTATTTTTT‑TATTTTTTTATTTTCAAAAAAAAAAAAAAAACAAACCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCtt                                                                                  <  2:2071536/128‑1 (MQ=255)
                                         aaaaatattttaATGTATATCCTCCTGATCTATTTTTT‑TATTTTTTTATCTTAACAAAAAAAAAAAAAACAAACCCC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCt                                                                                   <  1:3837533/118‑1 (MQ=255)
                                            attattATAATTTTAATTCTATTGATTTATTTTTT‑TATTTTTTTTAATTTAAAAATAAAAAAAAAAAAAATCCACATAAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCtt                                                                                  <  1:1340634/128‑1 (MQ=255)
                                                    aatttatatcaacGTTATCTATTTTTT‑TTTTTTTTTATCTTAAAAAATAAAAAAAAAAAAAACCCC‑TTTAAA‑AAA‑‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑Ct                                                                       <  1:3654403/116‑1 (MQ=255)
                                                         tgATCCTTGTGATATATTTTTT‑TATTTTTTTATATTAACAAA‑AAAAAAAAAACAATCCCCT‑‑‑‑AA‑AAA‑‑AATAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACca                                                              <  2:318071/127‑1 (MQ=255)
                                                           ataaccGTGATCTATTTTTT‑T‑TTTTTTTATATTAAAAAAAAAAAAAAAAAAAAAACCC‑‑TTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATAcc                                                               <  2:891679/123‑1 (MQ=255)
                                                            tacaagtgaaaaaTTTTTT‑TAATTTTTTATATTAAAAAAAAAAAAAAAAAAAAAACCC‑‑ATAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATAcc                                                               <  1:2720857/116‑1 (MQ=255)
                                                            tacTCGTTATCTATTTTTT‑TATATGTTTATATTAACAAATAAAAAAAAAACAATACCCTT‑‑‑AA‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACcac                                                             <  1:579526/126‑1 (MQ=255)
                                                              tattgtttttttttttt‑ttttttttttttttAAAAAAAAAAAAAAAAAAAAAACCCTTT‑‑AA‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACcac                                                             <  2:3368480/117‑1 (MQ=255)
                                                              ctatttatatatttttt‑tattttttTATATTAAAAAAAAAAAAAAAAAAAATACCC‑TTAAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACca                                                              <  1:3251707/119‑1 (MQ=255)
                                                              caattttttaaTTTTTT‑TAATTTTTTAAAATAAAAAAAAAAAAAAAAAAAAAACCC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACcac                                                             <  1:3116654/118‑1 (MQ=255)
                                                              atctttatttatttttt‑tattttttTAAATTAAAAAAAAAAAAAAAAAAAATCACC‑‑TTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACcac                                                             <  2:3004684/119‑1 (MQ=255)
                                                              atatttatatatttttt‑tattttttTATATTAAAAAAAAAAAAAAAAAAAATCCCCTTAAAAATTAAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATAc                                                                <  1:2113515/119‑1 (MQ=255)
                                                              aaagtttattatttttt‑tattttttTATATTTAAAAATAAAAAAAAAAAAATCGAC‑TTTAAT‑ATTT‑AAAAAAAAAAAAAAAATAAAAATAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACca                                                              <  1:2175697/119‑1 (MQ=255)
                                                               aattttactttttttt‑ttttttttTATCTTCACAAAAAAAAAAAAAAAAATACCCTTAAAAA‑TAAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACca                                                              <  1:1656139/118‑1 (MQ=255)
                                                                 gttttatatttttt‑tattttttAAAATTAAAAAATAAAAAAAAAAAAAACCCATTAAAAA‑ATAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACcaca                                                            <  1:2373765/122‑1 (MQ=255)
                                                                  ttaTCTATTTTTTATATTT‑TTTATTTAAAAAAAAAAAAAAAAAAAAAACACC‑‑ATAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACCACattt                                                         <  1:866064/126‑1 (MQ=255)
                                                                   tttatatttttt‑tattttttTATTTTAAAAAAAAAAAAAAAAAAAAT‑CCCATTAAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACCACattt                                                         <  1:1052154/124‑1 (MQ=255)
                                                                   tatatatttttt‑tattttttTATTATTAAAAATAAAAAAAAAACAATCCCC‑TTAATA‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAACACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACCACattt                                                         <  2:371498/124‑1 (MQ=255)
                                                                   tatatatttttt‑tattttttTATCATTAAAAATAAAAAAAAAACAATTCCC‑‑TTAAA‑ATTT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACCACatttt                                                        <  1:3442654/124‑1 (MQ=255)
                                                                     tatATTTTTT‑TTTTTTTTTATATTAAAAAATAAAAAAAAAAAAAAACAC‑TTAAAA‑AATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACCACatttta                                                       <  1:2956551/126‑1 (MQ=255)
                                                                      aattttttt‑tatttttttaTAATAAAAAATAAAAAAAAAAAAAAAAACCCTAAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACCACatttta                                                       <  1:200967/125‑1 (MQ=255)
                                                                       tttttttt‑tatttttttaTATTAAAAAATAAAAAAAAAAAAATAACCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACCACattttatttt                                                   <  2:3395194/126‑1 (MQ=255)
                                                                        aTTTTTT‑TAATTTTTTATAATAAAAAATAAAAAAAAAAAAATCCCC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACCACattttatttt                                                   <  1:800624/128‑1 (MQ=255)
                                                                         tttttt‑tatttttttaTCTTAACAAATAAAAAAAAAACAATCCCCAT‑‑‑AA‑AAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACCACATTTTATTTTTaa                                                <  1:3228072/128‑1 (MQ=255)
                                                                         tttttt‑tATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACAAAAAACAAACCACAAATAATTAAAATACC‑CTTTTATACCCAATTATAttttt                                                  >  2:278313/1‑128 (MQ=255)
                                                                         tttttt‑tAATTTTTTATCTTAAAAAAAAAAAAAAAAAAAATACCATT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACCACATTTTATTTTTa                                                 <  2:854086/128‑1 (MQ=255)
                                                                         attttt‑tATTTGTTTATATACAAAAAAAAAAAAAAAAAAAACCCC‑‑‑TAAA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACCACATTTTATTTTTa                                                 <  2:3641617/127‑1 (MQ=255)
                                                                          ttttt‑tttttttttATATAAAAAAAAAAAAAAAAAAAAAAACCC‑ATAAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACCACATTTTAttttt                                                  <  2:3607751/128‑1 (MQ=255)
                                                                           tttt‑ttttttttTATATTAACAAATAAAAAAAAAAAAAAACC‑‑TTTAAA‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACCACATTTTATTTTTaa                                                <  1:2566041/128‑1 (MQ=255)
                                                                            ttt‑tATTTTTTTATTATTAAAAATAAAAAAAAAAAAATACCCTTAAAAA‑TTAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACCACATTTTATTTTTa                                                 <  1:1352663/128‑1 (MQ=255)
                                                                             tt‑tATTTTTTTATAATAAAAAATAAAAAAAAAA‑AAT‑‑ACTATT‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACCACATTTTATTTTTAAAATa                                            <  1:1818579/128‑1 (MQ=255)
                                                                             tt‑tATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAA‑‑‑TAAAAAAAAA‑ATATATTAATTAAAATTAC‑ATATAATACCAAATTTTATTTTTAaaaaaat                                          >  1:3175061/1‑127 (MQ=255)
                                                                              t‑tATTTTTTTATCTTAACAAAAAAAAAAAAAAAAATACCC‑‑TTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACCACATTTTATTTTTAAAAt                                             <  1:3534162/128‑1 (MQ=255)
                                                                                   ttttttATTTTAAAAAAAAAAAAAAAAAAAATACCCTAAAAAA‑TTAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACCACATTTTATTTTTAAAATaa                                           <  1:2154154/125‑1 (MQ=255)
                                                                                   ttGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAAAAACAAAAAAAAAA‑CATAATTTATAAAAGAACC‑CTTATAGAACACATTTTTTTTTTaaaaataat                                         >  2:1729875/1‑123 (MQ=255)
                                                                                     tttaatattaaaaaaaaaaaaaaaaaCAATACC‑‑ATTAAA‑AATT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACCACATTTTATTTTTAAAATAAGata                                       <  1:190490/116‑1 (MQ=255)
                                                                                        tatattaaaaaaaaaaaaaaaaaaaaaACCATTAAAAATTAAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACCACATTTTATTTTTAAAATAAGata                                       <  2:3348086/119‑1 (MQ=255)
                                                                                           aataacaAAAAAAAAAAAAAAAATAAC‑‑ATTAAA‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                 <  1:92859/124‑1 (MQ=255)
                                                                                            taaaaaaaaaaaaaaaaaaaaaaACCC‑‑TTAAA‑AAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                               <  1:1989921/123‑1 (MQ=255)
                                                                                               acaAATAAAAAAAAAACAATCCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACAAAAACCAAA‑AAAAATTTATAAAAATACCAATATT‑TACCACTTTTTTTTTTTAAAAAAATAtttttaataaaaa                            >  2:292827/1‑119 (MQ=255)
                                                                                                    tAAAAAAAAAATAATTATATTTTAAA‑TTA‑‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑ATCTATTTCTTAAAATTCC‑CTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatat                         <  1:2276319/128‑1 (MQ=255)
                                                                                                        aaaaaaaCAATAACCTTAAAAA‑TTAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatatatt                      <  1:698782/128‑2 (MQ=255)
                                                                                                           aaaaCAATCCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACCTAAAAAAAAA‑CTCAATTTATTAAAATACA‑CTATTAACCCACATGTATTTTTTAAAATTAAATATTGACA‑aataaataaaataaaat               >  1:3699347/1‑119 (MQ=255)
                                                                                                               aaaaaaacccaaaaa‑aaat‑aaaaaaAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatata               <  2:389698/116‑1 (MQ=255)
                                                                                                               aaaaaaaacaataaa‑aaat‑aaaaaaAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatata               <  2:3141971/117‑1 (MQ=255)
                                                                                                                  aaataacattaa‑aaat‑ttaaaaAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat            <  1:3265749/118‑1 (MQ=255)
                                                                                                                   atacaaataaa‑aaat‑‑aaaaaaAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa          <  2:3560984/121‑1 (MQ=255)
                                                                                                                    atccactaaa‑aaat‑aaaaaaAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa          <  1:3496606/122‑1 (MQ=255)
                                                                                                                    ataacattaa‑aaat‑taaaaaAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACCACATTTTATTTATAAAATAAGATATTGACATAATATATATCTAATATATataa          <  1:3769005/120‑1 (MQ=255)
                                                                                                                     aaaattaaa‑aatt‑aaaaaAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataat         <  2:3165260/124‑1 (MQ=255)
                                                                                                                       cttttAA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAATACAAA‑CTCTATTTATTAAAATTTA‑ATATTATACTACATTTTATTTTTAAAATAAGATATTGACATATTATATATATTAGATATatattat       <  2:1155986/127‑2 (MQ=255)
                                                                                                                       ccttaaa‑aatt‑aaaaaAAAAAAAAAAAAAAAACTAAAAACAAC‑CGATATTTCTTAAAATTCC‑ATATTTTACCACATTTTATTTTTAAAAAAACATTTTAACATAATATATAAAAAatatatattaaaa       >  1:2909414/3‑123 (MQ=255)
                                                                                                                       atttAAA‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc       <  1:2798115/127‑1 (MQ=255)
                                                                                                                        atataa‑aaat‑aaataaAAAAAAAAAAATATA‑TATAAAAAAA‑TTCTATTTCTTAAAATTCA‑CTATTTTATCATATTTTATTTTTAAAATAATATATTTACATAATATATATCAAATATTTATAATACta     <  2:3025264/124‑1 (MQ=255)
                                                                                                                         taaaa‑ataa‑aaaaaaAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACta     <  2:3325959/126‑1 (MQ=255)
                                                                                                                          taaa‑aattaaaaaaAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACta     <  1:2673967/128‑1 (MQ=255)
                                                                                                                           aaa‑aatt‑aaaaaaAAAAAAAAAAAAAAAATAAAAACAAA‑CTAATTTTGTTAAAATAAC‑AAATTAAACAAAAATTAATTTTTAAAATAAAAAATTTAAATAAAAAATAAATAAAAATTATAATACtata   >  1:47881/1‑128 (MQ=255)
                                                                                                                           aaa‑aaat‑‑aaaaaaAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTatat  <  2:3246749/128‑1 (MQ=255)
                                                                                                                            |                                                                                                                                   
TAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCC‑CTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATAT  >  CP016816/202367‑202617

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.