BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	420,234	1	.	T	49.5%	inf / inf	807	intergenic (‑517/+326)	JCVSYN2_01895/JCVSYN2_01900	30S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand): ref base . (242/164); new base T (300/98); total (543/264)
Fisher's exact test for biased strand distribution p-value = 2.01e-06
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.88e-10

Only 100 of 978 total aligned reads displayed.

TTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAA  >  CP016816/420107‑420361

 tttATTAGTTTATAAATTAGAAAACTACTACCACTTTTTTAAAAAATTTTTAATTTTAATAAATGAATTATTTTTAAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑G‑C‑G‑‑‑‑t                                                                                                                                   <  1:1716848/128‑1 (MQ=255)

 tttATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑t                                                                                                                                   >  2:350411/1‑128 (MQ=255)

 tttATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑A‑G‑‑‑‑t                                                                                                                                   >  1:1519813/1‑128 (MQ=255)

  ttattaGTTAATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑tt                                                                                                                                  >  2:1121999/1‑128 (MQ=255)

   tattaGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑ttt                                                                                                                                 >  2:928455/1‑128 (MQ=255)

   tattaGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑ttt                                                                                                                                 >  2:3120930/1‑128 (MQ=255)

   tattaGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑ttt                                                                                                                                 >  2:2538213/1‑128 (MQ=255)

   tattaGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑ttt                                                                                                                                 >  1:3699280/1‑128 (MQ=255)

    attaGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAATAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑tttt                                                                                                                                >  1:1174038/1‑128 (MQ=255)

         ttGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑ttttttttt                                                                                                                           >  1:400170/1‑128 (MQ=255)

           gATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑ttttttttttt                                                                                                                         >  1:1077894/1‑128 (MQ=255)

            atatatTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑tttttttttttt                                                                                                                        >  1:825957/1‑128 (MQ=255)

              atatTAGAAAACTACTAGCACTTTTTTAATAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑tttttttttttttt                                                                                                                      >  1:450137/1‑128 (MQ=255)

              atatTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑tttttttttttttt                                                                                                                      >  1:1431063/1‑128 (MQ=255)

              atatTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑tttttttttttttt                                                                                                                      >  2:2238561/1‑128 (MQ=255)

               tatTAGAAAACTACTATCAATTTTTTAAAAAAATTTTAATTTTAATAAATTAATTATTTTTCAAATTGTTAAATTATTTTCAAAACAATATCTAATAAACA‑A‑TTTTA‑TG‑‑C‑G‑C‑G‑‑‑‑ttttttttttttttt                                                                                                                     <  1:243942/128‑1 (MQ=255)

               tatTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑ttttttttttttttt                                                                                                                     >  2:2934030/1‑128 (MQ=255)

               tatTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑ttttttttttttttt                                                                                                                     >  1:2960734/1‑128 (MQ=255)

                      aaaCTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑ttttttttttttttttttaaaa                                                                                                              >  1:493140/1‑123 (MQ=255)

                      aaaCTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTT‑AAATTTTTTAAATAATTTAAAATAATTAAAAAATAAAAC‑A‑ATTTA‑TT‑‑T‑T‑A‑A‑‑‑‑TTTTTTTTTTATTTTTT‑‑TAaa‑aa                                                                                                          >  1:2837197/1‑128 (MQ=255)

                       aaataatatcaattttttAAAAAATTTTTAATTTTAATAAATTAATTATTTTTAAAATTTTTAAATTATTTTAAAATAATTATAAATTAATAA‑A‑TTTTA‑TT‑‑G‑T‑C‑G‑‑‑‑‑‑TTTTTTTTTTTTTTT‑‑ACAA‑AAat                                                                                                        <  2:321991/116‑1 (MQ=255)

                         ataaaatgatttttttAAAAAATTTTTAATTTTAAAAACATAATTATTTTTAAAATTGTTAAATTATTTTCAAAACATTTTTTTTTAATAA‑A‑TTTTA‑TT‑‑C‑T‑C‑G‑‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAat                                                                                                        <  2:237790/118‑1 (MQ=255)

                         aatattttaattttttAAAAATTTTTTAATTTTAATAAATTTATTTTTTTTTAATTTTTTTAATTATTTTAAAATCATTTTATTTTATTAA‑A‑TTTTA‑TT‑‑C‑T‑C‑G‑‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAat                                                                                                        <  2:625597/118‑1 (MQ=255)

                         aatatataaattttttAAAAAAATTTTAATTTTAATAAATTAATTTTTTTTAAAATTTTTAAATTATTTTAAAATAATTATAAAATAATCA‑A‑TTTTA‑TT‑‑C‑T‑C‑GT‑‑‑TTTTTTTTTTTTTTTTT‑‑ACaa‑aaa                                                                                                         <  1:68189/118‑1 (MQ=255)

                          tactaGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑ttt                                                                                                                                 <  1:3560121/105‑1 (MQ=255)

                           actaGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑TTTTTTTTTTTTTTTTa‑‑aaaa‑aaaaac                                                                                                      >  1:3241119/1‑125 (MQ=255)

                           actaGCACTTTTTTAAAAAATTTGTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑‑‑‑‑TTTTTTTTTTTTT‑‑ACAA‑AAATATAatt                                                                                                  >  1:3161643/1‑128 (MQ=255)

                            ctaGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑TTTTTTTTTTTTTTTTT‑‑Taaa‑aaaaaat                                                                                                     >  1:3798726/1‑124 (MQ=255)

                              tttatttttttATAAAATTTTTAATTTTTATAATTTATTTTTTTTTTATATTTTTTATTTTTTTTAAAATAATTATATTTTAATTA‑A‑TTTTA‑TT‑‑T‑TAT‑T‑‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATATaa                                                                                                    <  1:1001556/123‑1 (MQ=255)

                              tcaattttttaAAAAAATTTAAAATTTAAA‑AAATTAATTATTTTTAAAATTTTTAAAATTTTTTAAAAAAAATATAAATTAATAA‑A‑ATTTT‑TT‑‑C‑T‑C‑GGT‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATATaa                                                                                                    <  1:1830002/123‑1 (MQ=255)

                              aGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑GT‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATATaa                                                                                                    >  2:3666987/1‑128 (MQ=255)

                              aGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAa‑aaataaaat                                                                                                   >  1:376047/1‑128 (MQ=255)

                               gCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑GT‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATATaaa                                                                                                   >  2:858675/1‑127 (MQ=255)

                               gCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑TTTTTTTTTTTTTTTTa‑‑aaaa‑aaaataaatt                                                                                                  >  1:2341249/1‑121 (MQ=255)

                                cACTTTTTTAAAAAATTTTTAATTTTAATAACCGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAAAATAaatt                                                                                                 >  1:1577972/1‑128 (MQ=255)

                                  cTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTATCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATATAatttat                                                                                               >  1:2024805/1‑128 (MQ=255)

                                  attttttTAAAAATTTTTAATTTTTATAAATTAATTTTTTTTAAAATTTTTTAATTTTTTTAAAATTTTTATATTTTAATAA‑A‑TTTTATTT‑‑T‑T‑T‑T‑‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATATAattta                                                                                                <  2:2837405/127‑1 (MQ=255)

                                   ttttttAAAAAATTTTTAATTTTTATTAATTAATTATTTTTAAATTTTTTAAATTTTTTTAAAATAATTTTATTTTAATAA‑A‑TTTTT‑TG‑‑C‑T‑C‑GT‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATATAatttat                                                                                               <  2:3879211/128‑1 (MQ=255)

                                     ttttAAAAAATTTTTAATTTTAATAAATTTATTTTTTTTAAATTTTTTATAATATTTTATAATAATTATTTATTAATAA‑A‑TTTTA‑TG‑‑G‑T‑C‑GT‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATATAatttattt                                                                                             <  2:3363386/128‑1 (MQ=255)

                                        tAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAAAAAAAAttattttatt                                                                                         >  1:2682449/1‑128 (MQ=255)

                                        tAAAAAATTTTTAATTTTAATAAATTAATTATTTTTAAAATTTTTAAATTATTTTAAAATAATTATATATTAATCA‑A‑TTTTA‑TT‑‑C‑T‑C‑G‑‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATATAATTTATTTGAtt                                                                                         <  1:3385751/128‑1 (MQ=255)

                                           aaaaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑TTTTTTTTTTTTATATT‑‑AAAATAAATAT‑ATTTATTTTTTTaac                                                                                      >  2:3534045/1‑127 (MQ=255)

                                            aaaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑GT‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAAAAAAATTAATTTTATaaaa                                                                                      >  1:2596050/1‑128 (MQ=255)

                                               tttttaattttaatTACTTAATTTTTTTTAAAATTGTTTAATTTTTTTAAAATCTTTATCTATTAATCT‑A‑TTTTA‑TT‑‑C‑T‑C‑GT‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATATAATTTATTTGATTAAACGt                                                                                   <  1:3526304/117‑1 (MQ=255)

                                                 tttaattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑GT‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATAAAATTTATTTTATTAAACatat                                                                                 >  2:3276401/10‑128 (MQ=255)

                                                 tttaattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑‑TTTTTTTTTTTTTTTT‑‑AAAA‑AAATATAATTTATTTGATTAAACTTatat                                                                               >  1:1270435/10‑128 (MQ=255)

                                                   taattttaatAAATTAATTATTTTTTAAATTTTTTAATTAATTTATAATCAATATCTATTAATAA‑A‑TTTTA‑TG‑‑C‑T‑C‑GT‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATATAATTTATTTGATTAAACGTatat                                                                               <  1:3473052/121‑1 (MQ=255)

                                                    aattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑GT‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AATTATAATTTTTTTATTTAAAAGTATAtt                                                                              >  1:3325185/7‑128 (MQ=255)

                                                    aattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑A‑T‑C‑G‑‑‑‑TTTTTTTTTTTTTTTTA‑‑AAAA‑AAAAAAAATATATTTAATTAAAAGTaaatat                                                                             >  2:462532/7‑126 (MQ=255)

                                                       tttattaatttaaTTTTTTTTAAAATTTTTAAATTATTTTTAAATATTTATTTTTTAATAA‑A‑TTTTT‑TT‑‑T‑T‑T‑GT‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATATAATTTATTTGATTAAACGTATATTTAt                                                                           <  2:1714565/117‑1 (MQ=255)

                                                       tttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATATAATTTATTTTATTAAACTTATATTTAtt                                                                          >  1:3605101/4‑127 (MQ=255)

                                                         taatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑GT‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATAAAATTTATTATAATAAACTAAAATTTAttt                                                                         >  1:3299481/2‑126 (MQ=255)

                                                         taatAACTGAAGTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑‑TTTTTTTTTTTTTTTT‑‑AAAA‑AAATATAATTTATTTTATTAAAATTATATTTATtttt                                                                       >  1:1907865/2‑128 (MQ=255)

                                                          aatatatttatttttTTTTAATTTTTTAAATTTTTTTAAAATAATTATATATTAAATA‑T‑TTTTA‑TT‑‑T‑T‑T‑GT‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATATAATTTATTTGATTAAACGTATATTTATGtt                                                                        <  2:122121/119‑1 (MQ=255)

                                                          aatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑GTTTTTTTTTTTTTTTTTTTTT‑‑AAAA‑AAATATAATTTATTTTATTAAACAtaaaggaaa                                                                           >  2:1973392/1‑121 (MQ=255)

                                                          aatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑A‑T‑CTT‑‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATATAATTTATTTTATTAAAAATATATTTAtttt                                                                        >  1:777824/1‑128 (MQ=255)

                                                          aatAAATGAATTATTTTTAAAATTTTTAAATTATTTTCAAATCATTATATATTAATAA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑‑TTTTTTTTTTTTTTTT‑‑ACAA‑AAATATAATTTATTTGATTAAACGTATATTTATGTTta                                                                      <  2:1003279/128‑1 (MQ=255)

                                                           ataatttttttattTTTTAAATTTTTAATTTATTTTTAAATTATTATTTATTAATAA‑A‑TTTTA‑TT‑‑C‑T‑C‑T‑‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATATAATTTATTTGATTAAACGTATATTTATGTTta                                                                      <  1:1345622/119‑1 (MQ=255)

                                                               cTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑GT‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATATAATTTATTTTATTAAAATTATATTTATTTTtaata                                                                   >  1:2242948/1‑128 (MQ=255)

                                                               cTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑‑‑TTTTTTTTTTTTTTT‑‑AAAA‑AAATATATTTTATTTTATTAAACGTATTTTTTTGTTTATTaaaa                                                                >  1:1603749/1‑128 (MQ=255)

                                                               attaaTTATTTTTAAAATTTTTTAATTATTTTAAAATAATTATATATTAATAA‑A‑TTTTA‑TT‑‑C‑T‑A‑G‑‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATATAATTTATTTGATTAAACGTATATTTATGTTtaataa                                                                  <  1:3075462/125‑1 (MQ=255)

                                                                tGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATATAATTTATTTTATTAAAATTATATTTATTTTTAATaaa                                                                 >  2:3149899/1‑128 (MQ=255)

                                                                   tatttttttAAAATTGTTAAATTATTTTTAAAAATTTATGTTTTTATTA‑A‑TTTTA‑TG‑‑‑‑T‑‑‑‑‑‑‑‑TATTTTTTTTTTTTTTT‑‑TCAA‑ATATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGa                                                           <  2:2697094/124‑1 (MQ=255)

                                                                   attattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATATAATTTATTTTATTAAAAGTATATTTATTTTTAATAAAAAt                                                              >  1:876933/1‑128 (MQ=255)

                                                                     ttttttttTAATTTTTAAATTATTTTTAATTAATTTTATTTTAATAA‑A‑TTTTT‑TT‑‑A‑T‑C‑T‑‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATgg                                                            <  1:1120805/126‑1 (MQ=255)

                                                                     tattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑TTTTTTTTTTTTTTTTTTAAAAA‑AAAAAAAATATATTTTATAAAATTTATATTTAT‑TTTAATaaaaaat                                                             >  1:2133548/1‑126 (MQ=255)

                                                                        ttttaaattttttaaattTTTTTAAAATAATTATATATTAATAATT‑TTTTT‑TT‑‑T‑T‑T‑T‑‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGaa                                                          <  2:1319821/128‑1 (MQ=255)

                                                                        ttttTAATTTGTTAAAATATTTTATATTTATTTTTTATTTATCA‑A‑TTTTA‑TGTTA‑T‑T‑T‑‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGa                                                           <  1:3365879/128‑1 (MQ=255)

                                                                        ttttCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATATAATTTATTTTATTAAACTTATATTTATTTTTAATAAAAATTGaaa                                                         >  1:164697/1‑128 (MQ=255)

                                                                         tttataaTTTTTAAATTATTTTAAAAAAATAATTTATTAATTA‑A‑TTTTT‑TG‑‑CTT‑C‑T‑‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGaaa                                                         <  2:3066795/123‑1 (MQ=255)

                                                                          tttaaaTTTTTAAATTATTTTTAAATCATTATATATTAATAA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑‑TTTTTTTTTTTTTTTT‑‑ACAA‑AAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAaaaga                                                      <  2:3459365/125‑1 (MQ=255)

                                                                            taaaTTTTTAAATTATTTTTAAATAATTATATATTAATTA‑ATTTTTT‑TT‑‑T‑T‑T‑T‑‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAaaaga                                                      <  2:779842/127‑1 (MQ=255)

                                                                            cAAATTTTTTAATTATTTTAAAAATATTATTTTTTTATAA‑A‑TTTTT‑TT‑‑C‑T‑T‑GT‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAaaaga                                                      <  2:3613998/128‑1 (MQ=255)

                                                                            cAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑GTT‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATATAATTTTTTTGTTTAAAATTTTTTTTATTTTTAATAAAAATTGaaaaa                                                       >  2:3016604/1‑127 (MQ=255)

                                                                              aaTTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTCA‑TG‑‑C‑T‑C‑GT‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATATAATTTATTTGATTAAAATTATATTTATTTTTAATAAAAATGTAaaataaa                                                    >  1:1760476/1‑128 (MQ=255)

                                                                                    tAATTTATATTCAAATAATTAAATATTAATAA‑A‑TTTTA‑TT‑‑T‑G‑A‑T‑‑‑‑TTTTTTTTTTTTTTTTT‑‑ACTA‑AAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAAtt                                             <  2:2065809/128‑1 (MQ=255)

                                                                                     aaaTTATTTTAAAATAATTAACTATTAATCA‑A‑TTTTA‑TT‑‑A‑T‑C‑T‑‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTg                                            <  1:3011574/128‑1 (MQ=255)

                                                                                          attTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑GT‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATAAAATTTATTTTATTAAACTTATATTTATTTTTAATAAAAATTTAaaataaatttatttttaat                                        >  1:2069123/1‑116 (MQ=255)

                                                                                            tttCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATATAATTTATTTTATTAAACGAAATTTTATTTTTAATAAAAATGTAAAATAAATTTAATTTtaataaa                                     >  1:2534462/1‑127 (MQ=255)

                                                                                                    cATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑GTT‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAAAATATTTTTTTTTTATAAAATTTTTTTTTTTTTTAAAAAAAATAAAAAATAAAATTAATTTTAATTAtattttt                               >  1:3205591/1‑127 (MQ=255)

                                                                                                      ttATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑GT‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATATATTTTATTTTATTAAACTTATATTTTTGTTTATTAAAAATGGAAAAAAAAGTTATTTGTAATTAtaattaaatt                            >  2:3752953/1‑128 (MQ=255)

                                                                                                         tCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑GT‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATATAATTTATTTTATTAAAAGTATATTTTTTTTTAATAAAAATTGAAAAGAAATTTAATTTTAATAATAATTTAATTaaa                         >  1:562466/1‑128 (MQ=255)

                                                                                                          cTATTAATCG‑A‑TTTTA‑TG‑‑C‑T‑C‑GT‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATATATTTTATTTTATTAAAATTATTTTTTTTTTTAATAAAAATTTAAAATAAATTAAATTTTAAAAAAAATttaattataa                        >  1:1946991/1‑125 (MQ=255)

                                                                                                            aTTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑GT‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATTTAATTTATTTGATTAAACGTATTTTTATTTTTAATAAAAATGGAAAAGAAAGGGAATTGTGATATTAATTTAATTAAattt                      >  2:3321440/1‑126 (MQ=255)

                                                                                                              tAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑GT‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATATAATTTTTTTTTTTAAACGTATATTTTTTTTTAATAAAAATTTAAAATAAAGTTAATTTTAATAATAATTTTATTAAatatat                    >  1:3106705/1‑128 (MQ=255)

                                                                                                              tAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑TTTTTTTTTTTTTTTTTA‑AAAA‑AAATATATTTTTTTTATTTAAAATAATTTTTTTTTTAAAAAAAAATGAAAAAAAAATTTAATTTAAAAAAAAATTAAATTAAataaaa                    >  2:1461605/1‑125 (MQ=255)

                                                                                                              tAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑‑TTTTTTTTTTTTTTTT‑‑AAAA‑AAATATATTTTATTTGATTAAAGGTAATTTTATGTTTAATAAAAATGGAAAAGAAAGAGATTTGAAATAAtaattaaatttattttttac                  >  2:1622229/1‑118 (MQ=255)

                                                                                                               aaTCA‑A‑TTTTA‑TG‑‑C‑T‑C‑GT‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAAAATAATTTTTTTTATTAAACGTATTTTTTTGTTTAATAAAAATGTAAAATAATGTGAATTGTCAAAATAATTTATTTAAAtttata                   >  2:3413331/1‑128 (MQ=255)

                                                                                                               aaTCA‑A‑TTTTA‑TG‑‑C‑T‑C‑GT‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAAAATATTTTTTTTTTTTAAAGTTATTTTTTTTTTTAAAAAAAATGTAAATAAAATTTATTTTTAATATAAATTTAATTAAAtatata                   >  2:3571463/1‑128 (MQ=255)

                                                                                                               aaTCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATATAATTTATTTTATTAAACGTATATTTATTTTTAATAAAAATGTAAAATAAATTTAATTTTAATAATAATTTAATTAAATATATaa                  >  1:3438145/1‑128 (MQ=255)

                                                                                                                aTCA‑A‑TTTTA‑TG‑‑C‑T‑C‑GTTTTTTTTTTTTTTTTTTTTT‑‑AAAA‑AAATTTAATTTATTTTATTAAACGTTTTTTTATTTTTTATAAAAATGGAAAATAATTTGTATTTTAATAAAAATTTATTTAAatatt                     >  2:1939365/1‑127 (MQ=255)

                                                                                                                 tCA‑A‑TTTTA‑TG‑‑C‑T‑C‑GT‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATAAAATTTATTTTTTTAAACTTTTATTTTTGTTTAATAAAAATTTAAATTAAATTTAATTTAATTAATAATTTATTTAAATTTATaaa                 >  1:604962/1‑127 (MQ=255)

                                                                                                                    ta‑TTTTA‑TG‑‑T‑T‑CTT‑‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACaa               <  2:3818503/127‑1 (MQ=255)

                                                                                                                           a‑TG‑‑C‑T‑C‑GT‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATATATTTTATTTGTTTAAAGTTTTTTTTATGTTTAATAAAAATGTAAAATAAATTTATTTTTAATAATAATTTATTTAATTTTTTAAAAATTTaat         >  1:2755595/1‑127 (MQ=255)

                                                                                                                           a‑TG‑‑C‑T‑C‑G‑‑‑‑TTTTTTTTTTTTTTTTTA‑AAAA‑AAATAAAATTTTTTTTTATAAACTTATTTTTTTTTTTAATAAAAATGAAAAAAAAATTAAATTGTAATATTAATTTATTTAAAAATATAAAAATTTaat         >  1:384668/1‑127 (MQ=255)

                                                                                                                              ttttttttag‑‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTa           <  1:961659/119‑1 (MQ=255)

                                                                                                                                     ttg‑‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTa    <  2:1854764/126‑1 (MQ=255)

                                                                                                                                     atg‑‑‑‑TTTTTTTTTTTTTTTTT‑‑ATAA‑AAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTa    <  2:2023662/126‑1 (MQ=255)

                                                                                                                                     agg‑‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑TAATATTATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTa    <  1:2886285/126‑1 (MQ=255)

                                                                                                                                       g‑‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAAATTAATTTTTTTGATTAAACGTTTTTTTTTTTTTAATAAAAATGTAAAATAAATTGAATTTTAAAAATAATTTAATAAAAAATATAAAAATTTAAGTTTTaaa  >  1:2197229/1‑128 (MQ=255)

TTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑TTTTA‑TG‑‑C‑T‑C‑G‑‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAA  >  CP016816/420107‑420361

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`