Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816420,2530CA47.2% 613.9 / inf 1064intergenic (‑536/+307)JCVSYN2_01895/JCVSYN2_0190030S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand):  ref base C (159/369);  new base A (409/64);  total (581/483)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1095 total aligned reads displayed.

GAAAACTACTAGCACTTTTTTAAAAAA‑TTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑G‑‑‑‑TTT‑TTTTT‑TTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTT  >  CP016816/420127‑420378
                                                                                                                                              |                                                                                                                             
   aaCTAATATCACTTTTTTAAAAAA‑TTTTTAATTTTAATAAATTAATTAATTTTCAAATTGTTAAATTATTTTCAAAACATTATCTTTTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑GT‑‑‑TTT‑TTTTT‑TTTTTTTTT‑ACaaa                                                                                                                            <  1:3100799/128‑1 (MQ=255)
     ttaatatcaattttttAAAAAA‑TTTTTAATTTTAATAACTTTATTATTTTTCAATTTTTTAAATTTTTTTGAATTCATTTTTTTTTATTTAA‑‑‑TTTTT‑TT‑‑CT‑T‑G‑‑‑‑TTT‑TTTTT‑TTTTTTTTT‑ACAAAAat                                                                                                                         <  2:3170065/118‑1 (MQ=255)
      tactaGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑G‑‑‑‑TTTATTTTT‑TTTTTTTTT‑Aaaaaaaa                                                                                                                         >  2:2521636/1‑127 (MQ=255)
      tactaGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑G‑‑‑‑TTT‑TTTTT‑TTTTTTTTT‑Taaaaaaat                                                                                                                        >  1:3496607/1‑126 (MQ=255)
        ctaGCACTATTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑G‑‑‑‑TTT‑TTTTT‑TTTTTTTTT‑Taaaaaaattt                                                                                                                      >  2:384312/1‑124 (MQ=255)
         taGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑G‑‑‑‑TTT‑TTTTT‑TTTTTTTTT‑Aaaaaaaatata                                                                                                                     >  1:3792929/1‑123 (MQ=255)
          ttaatttttttAAAAAT‑TTTTTATTTTTAATAAATTTATTTTTTTTAAAATTTTTAAATTTTTTTAAAATAATTATATATTAATTAA‑‑‑TTTTA‑TG‑‑TT‑C‑GT‑‑‑TTT‑TTTTT‑TTTTTTTTT‑ACAAAAATATaa                                                                                                                     <  2:3723562/123‑1 (MQ=255)
          ataaattttttAAAAAATTTTTTATTTTAAATAA‑TTAATTATTTTTAAAATTTTTAAATTTTTTTAAAATAATTATTTATTAATTAA‑‑‑TTTTA‑TT‑‑TT‑A‑GT‑‑‑TTT‑TTTTT‑TTTTTTTTT‑ACAAAAATATaa                                                                                                                     <  2:3496607/123‑1 (MQ=255)
          aGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑G‑‑‑‑TTT‑TTTTT‑TTTTTTTTA‑TAAAAAAAATaaa                                                                                                                    >  1:2440025/1‑127 (MQ=255)
           gCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑G‑‑‑‑TTT‑TTATT‑TTTTTTTTT‑AAAAAAAaataata                                                                                                                   >  1:2101777/1‑127 (MQ=255)
             aCTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑T‑‑‑‑TTT‑TTTTT‑TTTTTTTTT‑AAATAAATTAAattta                                                                                                                 >  2:1962586/1‑128 (MQ=255)
             aCTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑G‑‑‑‑‑TT‑TTTTT‑TTTTTTTTT‑ACAAAAATATAatttat                                                                                                                >  1:3445723/1‑128 (MQ=255)
              cTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑G‑‑‑‑TTT‑TTTTT‑TTTTTTTTT‑TTAAAAAAATaaaattt                                                                                                                >  1:270417/1‑123 (MQ=255)
               ttttttAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTATTCAA‑‑‑TTTTA‑TG‑‑CT‑C‑GT‑‑‑TTT‑TTTTT‑TTTTTTTTT‑ACAAAAAAAAAaattat                                                                                                                >  1:2058344/1‑128 (MQ=255)
               ttttttAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑GT‑‑‑TTT‑TTTTT‑TTTTTTTTT‑AAAAAAATATAatttat                                                                                                                >  1:563861/1‑128 (MQ=255)
                tttttAAAAAA‑TTTTTAATTTTAAAAAATTAATTATTTTTAAAATTTTTAAAATATTTTAAAATAATAATATATTAATAAA‑‑‑TTTTA‑TG‑‑CT‑C‑GTT‑‑TTT‑TTTTT‑TTTTTTTTT‑ACAAAAATATAatttat                                                                                                                <  1:2270637/128‑1 (MQ=255)
                    tAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑G‑‑‑‑‑TT‑TTTTT‑TTTTTTTTT‑ATAAAAATAATaattatttttatt                                                                                                         >  2:486719/1‑123 (MQ=255)
                    tAAAAAA‑TTTTTAATTTTAATAAATGAATTATTTTTAAAATTGTTTAATTATTTTAAAATTAATATATATTAATAAA‑‑‑TTTTA‑TG‑‑CT‑A‑G‑‑‑‑TTT‑TTTTT‑TTTTTTTTT‑ACAAAAATATAATTTATTTGAtt                                                                                                          <  2:3646502/128‑1 (MQ=255)
                     aaaaaa‑TTTTTAATTTTAATAAATTAATTATTTTTTAAATTTTTAAATTATTTTAAAATAATTTTATATTAATAAA‑‑‑TTTTT‑TT‑‑CT‑C‑GT‑‑‑TTT‑TTTTT‑TTTTTTTTT‑ACAAAAATATAATTTATTTGAtt                                                                                                          <  1:1360971/128‑1 (MQ=255)
                      aaaaa‑TTTTTTATTTTAATAAATTAATTATTTTTTAAATTTTTAAATTATTTTAAAATAATTATATATTAATTAATT‑TTTTT‑TT‑‑AT‑T‑T‑‑‑‑TTT‑TTTTT‑TTTTTTTTT‑ACAAAAATATAATTTATTTGAtt                                                                                                          <  2:752591/128‑1 (MQ=255)
                       aaaa‑TTTTTAATTATATTTACTTAATTTTTTTTAAAATTTTTAAATTATTTTCAAATAAAATTAAATTAATCAA‑‑‑TTTTA‑TG‑‑TT‑C‑GT‑‑‑TTT‑TTTTT‑TTTTTTTTT‑ACAAAAATATAATTTATTTGATTaa                                                                                                        <  2:3564263/128‑1 (MQ=255)
                             ttttaattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑G‑‑‑‑‑‑T‑TTTTT‑TTTTTTTTT‑ACAAAAATATAATTTATTTTATAAAACTTatat                                                                                                >  1:2363932/11‑128 (MQ=255)
                               ttaattttattAACTGAATTTTTTTTCAAATTGTTAAATTATTTTCAAATGATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑G‑‑‑‑TTT‑TTTTTATTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGtata                                                                                                 <  2:313210/118‑1 (MQ=255)
                                taattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑G‑‑‑‑TTT‑TTTTT‑TTTTTTTTT‑AAAAAAAAATAATTTATTTAATTAAAACtataat                                                                                               >  1:2605850/8‑126 (MQ=255)
                                 aattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑GT‑‑‑TTT‑TTTTT‑TTTTTTTTT‑AAAAAATTATAATTTTTTTATTTAAAAGTATAtt                                                                                               >  1:3325185/7‑128 (MQ=255)
                                   ttttaataatTTAATTATTTTTAAATTTTTTAAATTATTTTAAAATAATTATATATTAATAAATT‑TTTTT‑TT‑‑TT‑T‑T‑‑‑‑TTT‑TTTTT‑TTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATAttt                                                                                              <  1:2014082/124‑1 (MQ=255)
                                   atttaataatTTAATTTTTTTTTAAATTTTTTAATTTTTTTAAAATAATTATATATTAATAAA‑‑‑TTTTATTT‑‑TT‑T‑T‑‑‑‑TTT‑TTTTT‑TTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTa                                                                                             <  1:654416/124‑1 (MQ=255)
                                    ttttataaatttatttttTTTTTAATTTTTTAATTATTTTAAAATTATTATTTATTAATAAATTTTTTTT‑TT‑‑TT‑T‑T‑‑‑‑TTT‑TTTTT‑TTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATAttt                                                                                              <  1:913178/116‑1 (MQ=255)
                                      taatAACTGAAGTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑G‑‑‑‑‑TT‑TTTTT‑TTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAAATTATATTTATtttt                                                                                        >  1:1907865/2‑128 (MQ=255)
                                       aatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑G‑‑‑‑TTT‑TTTTT‑TTTTTTTTT‑AAAAAAAAATAATTTATTTTATTAAAAATATATTTATGttt                                                                                        >  2:334178/1‑128 (MQ=255)
                                       aatAACTGAATTATTTTTCAAATTGTTAAATTATTTTAAAATCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑G‑‑‑‑‑TT‑TTTTT‑TTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTta                                                                                       <  2:2935232/128‑1 (MQ=255)
                                       aatAAATGAATTATTTTTAAAATTTTTAAATTATTTTAAAATAATTATATATTAATAAA‑‑‑TTTTA‑TT‑‑CT‑A‑G‑‑‑‑‑TT‑TTTTT‑TTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTta                                                                                       <  1:38866/128‑1 (MQ=255)
                                        attaattatttattTTTTAAATTTTTTAATTTTTTTAAAATAATAATATATTAATAAA‑‑‑TTTTA‑TT‑‑CT‑A‑GT‑‑‑TTT‑TTTTT‑TTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGttt                                                                                        <  1:1950313/119‑1 (MQ=255)
                                           atttatttattTTT‑AATTTGTTTAATTTTTTTAAAATAATTATCTTTTTATTAA‑‑‑TTTTA‑TT‑‑CT‑CTT‑‑‑‑TTT‑TTTTT‑TTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTtaata                                                                                    <  2:1666405/122‑1 (MQ=255)
                                           aCTTAATTATTTTTAAAATTTTTAAATTATTTTAAAATAATTATATATTAATAAA‑‑‑TTTTA‑TG‑‑AT‑C‑G‑‑‑‑‑TT‑TTTTT‑TTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTtaataa                                                                                   <  2:3309342/128‑1 (MQ=255)
                                             ttttatattTTTTTAATTTTTTAATTTTTTTTAAATAATTATATATTAATAAA‑‑‑TTTTT‑TT‑‑TT‑C‑G‑‑‑‑TTT‑TTTTT‑TTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATaaa                                                                                  <  2:3250050/123‑1 (MQ=255)
                                             ttaaTTTTTTTTAAAATTTTTTAATTTTTTTTAAATAATTATATATTAATAAAT‑‑TTTTT‑TA‑‑TT‑T‑T‑‑‑‑TTT‑TTTTT‑TTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTtaataa                                                                                   <  1:1804326/126‑1 (MQ=255)
                                             tGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑G‑‑‑‑TTT‑TTTTT‑TTTTTTTTT‑ACAAAAAAATAATTTTTTTTATTTAAC‑TATTTTTTTTTTTTATtaaa                                                                                 >  1:3829201/1‑128 (MQ=255)
                                                attattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑GTT‑‑TTT‑TTTTT‑TTTTTTTTT‑AAAAAAATTTAATTTATTTATTTAAAATATTTTTTTTTTTTAATaaaa                                                                                 >  1:3397411/1‑128 (MQ=255)
                                                 ttattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑G‑‑‑‑TTT‑TTTTT‑TTTTTTTTT‑AAAAAAATATAATTTATTTAATTAAAGTAATATTATTTTTTAATaaaattt                                                                              >  1:1672713/1‑125 (MQ=255)
                                                 ttattTTTAAAATTTTTAAATTTTTTTAAAATAATTATATATTTATAAA‑‑‑TTTTT‑TT‑‑ATAT‑T‑‑‑‑TTT‑TTTTT‑TTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAAt                                                                               <  1:992975/128‑1 (MQ=255)
                                                  tattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑GTT‑‑TTT‑TTTTT‑TTTTTTTTT‑ACAAAAATATAATTTATTTTATTAAAGGTATATTTATGTTTAATAAAAAt                                                                               >  2:3598816/1‑128 (MQ=255)
                                                   attTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑G‑‑‑‑TTT‑TTTTT‑TTTTTTTTT‑ACAAAAATAAAATTTATTTTATTAAACTTATATTTATTTTTAAAAAAAATGGa                                                                            >  1:1722320/1‑128 (MQ=255)
                                                     ttttTAATTTGTTAAAATATTTTATATTTATTTTTTATTTATCAA‑‑‑TTTTA‑TGTTAT‑T‑T‑‑‑‑TTT‑TTTTT‑TTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGa                                                                            <  1:3365879/128‑1 (MQ=255)
                                                     ttttTAAATTTTTTAATTATTTTTAAATTAATTTTTATTTATCAA‑‑‑TTTTT‑TT‑‑TT‑CTT‑‑‑‑TTT‑TTTTT‑TTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGaa                                                                           <  2:1747863/128‑1 (MQ=255)
                                                         cAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑GTT‑‑TTT‑TTTTT‑TTTTTTTTT‑AAAAAAATATAATTTTTTTGTTTAAAATTTTTTTTATTTTTAATAAAAATTGaaaaa                                                                        >  2:3016604/1‑127 (MQ=255)
                                                           aaTTTTTAAATTTTTTTAAATTTATTATTTTTTAATAAA‑‑‑TTTTT‑TT‑‑TT‑A‑T‑‑‑‑TTT‑TTTTT‑TTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAaaagaaag                                                                    <  2:1826637/128‑1 (MQ=255)
                                                           aaTTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑GTT‑‑TTT‑TTTTT‑TTTTTTTTT‑AAAAAAAAAAAATTTATTTTATTAAAATTATTTTTTTTTTTAATAAAAATGTAaaataa                                                                      >  1:3584903/1‑128 (MQ=255)
                                                           aaTTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑GT‑‑‑TTT‑TTTTT‑TTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAAATTATATTTTTTTTTAATAAAAATTTAaaataaa                                                                     >  1:1537559/1‑128 (MQ=255)
                                                           aaTTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑GT‑‑‑TTT‑TTTTT‑TTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAAAGTATTTTTATTTTTAATAAAAATGTAaaataaa                                                                     >  2:2342660/1‑128 (MQ=255)
                                                               gTTAAATTATTTTAAAATAATTATATATTAATTAA‑‑‑TTTTA‑TT‑‑CT‑C‑G‑‑‑‑TTT‑TTTTT‑TTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGaa                                                                <  1:2994138/128‑1 (MQ=255)
                                                                ttAAATTATTTTCAAATCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑GTTTTTTT‑TTTTT‑TTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAACTTATTTTTTTTTTTAATAAAAATTTAaaataaatt                                                                   >  1:2838231/1‑126 (MQ=255)
                                                                ttAAATTATTTTCAAATCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑GT‑‑‑TTT‑TTTTT‑TTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAACTTATATTTATTTTTAATAAAAATTTaaaaaaaatttaa                                                                >  1:2757606/1‑123 (MQ=255)
                                                                  taaTTATTTTAAAATAATTTTTTTTTAATAAA‑‑‑ATTTA‑TT‑‑CT‑A‑T‑‑‑‑TTT‑TTTTT‑TTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTg                                                             <  2:2604833/127‑1 (MQ=255)
                                                                  aaaTTATTTTCAAATCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑GTT‑‑TTT‑TTTTT‑TTTTTTTTT‑ACAAAAATATAATTTTTTTAATTAAACTTATATTTATTTTTAAAAAAAATGTAAAAAAAATTTAAt                                                               >  2:923379/1‑128 (MQ=255)
                                                                    attattTTCAAATCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑G‑‑‑‑‑TT‑TTTTT‑TTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAAATTATATTTATTTTTAATAAAAATTTAAAAAAAATTGAATTTTCa                                                          >  1:1461011/1‑128 (MQ=255)
                                                                     ttattTTCAAATCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑G‑‑‑‑‑TT‑TTTTT‑TTTTTTTTT‑AAAAAAATAAAATTTATTTAATTAAACTTATTTTTTTGTTTAATAAAAATTTAAAAGAAATTGAATTGTAat                                                         >  2:1205405/1‑128 (MQ=255)
                                                                      tattTTAAATTTATTATTTTTTAATAAA‑‑‑TTTTT‑TG‑‑‑T‑T‑T‑‑‑‑TTT‑TTTTT‑TTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCata                                                        <  2:1270435/128‑1 (MQ=255)
                                                                       attTTCAAATCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑GT‑‑‑TTT‑TTTTT‑TTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAACTTATATTTATTTTTAATAAAAATGTAAAAAAAATTTAAttttaat                                                         >  1:3159456/1‑123 (MQ=255)
                                                                         tttCAAATCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑GT‑‑‑TTT‑TTTTT‑TTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAACGTATATTTTTTTTTATTAAAAATGAAAAATAAATTTAATTTTCataa                                                       >  1:1601928/1‑128 (MQ=255)
                                                                         tttCAAATCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑G‑‑‑‑TTT‑TTTTT‑TTTTTTTTTAAAAAAAATATATTTTATTTTATTAAACGTATATTTATTTTTATAAAAAATTTAAAATAATTTTAATTTtaataa                                                       >  1:3727892/1‑128 (MQ=255)
                                                                            taaattatttattATTAATAAA‑‑‑TTTTA‑TT‑‑TT‑C‑T‑‑‑‑TTT‑TTTTT‑TTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATaataat                                                   <  2:3379122/116‑1 (MQ=255)
                                                                             aaaTCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑GTT‑‑TTT‑TTTTT‑TTTTTTTTT‑AAAAAAAATTAATTTATTTGTTTAAAAGTATATTTTTTTTTAATTAAAATTGAAAATAAATTTAATTTTaataatta                                                    >  2:2071280/1‑126 (MQ=255)
                                                                                tCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑GT‑‑‑TTT‑TTTTT‑TTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAAAGTATTTTTATTTTTAATAAAAATGTAAAATAAATTTAATTTTAATATtaattta                                                >  1:3661030/1‑128 (MQ=255)
                                                                                 cATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑GTT‑‑TTT‑TTTTT‑TTTTTTTTT‑AAAAAAAAATATTTTTTTTTTATAAAATTTTTTTTTTTTTTAAAAAAAATAAAAAATAAAATTAATTTTAATTAtattttt                                                >  1:3205591/1‑127 (MQ=255)
                                                                                  aTTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑GTT‑‑TTT‑TTTTT‑TTTTTTTTT‑AAAAAAATAAAATTTATTTTTTTAAAAGTATATTAATTTTTATTAAAAAATTAAAAAAAAGTTAATTTTAATAAaattttaa                                               >  2:3081715/1‑128 (MQ=255)
                                                                                   ttATTTTTTAATTAA‑‑‑TTTTA‑TT‑‑TT‑T‑TT‑‑‑TTT‑TTTTT‑TTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAAtaatttaatt                                             <  1:3057346/128‑1 (MQ=255)
                                                                                   ttATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑G‑‑‑‑TTT‑TTTTT‑TTTTTTTTT‑ACAAAAATAAAATTTATTTGATTAAACGTATATTTATGTTAAATAAAAATGGAAAAAAAAATGAATTGTAATAATAATttaatta                                            >  2:224516/1‑128 (MQ=255)
                                                                                            aaTCAA‑‑‑TTTTA‑TG‑‑CT‑C‑GT‑‑‑TTT‑TTTTT‑TTTTTTTTT‑ACAAAAAAATAATTTTTTTTATTAAACGTATTTTTTTGTTTAATAAAAATGTAAAATAATGTGAATTGTCAAAATAATTTATTTAAAtttata                                    >  2:3413331/1‑128 (MQ=255)
                                                                                             aTCAA‑‑‑TTTTA‑TG‑‑CT‑C‑GTTT‑TTT‑TTTTT‑TTTTTTTTT‑AAAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGTAAAATAAAGTTAATTTTAATAATAATTTAATTAAatatat                                     >  1:2912485/1‑128 (MQ=255)
                                                                                                     ttttA‑TG‑‑CT‑C‑G‑‑‑‑TTT‑TTTTT‑TTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAAATTATATTTATTTTTAATAAAAATTTAAAATAAATTGAATTTTAATAAAAATTTAATTAAAtatatatgaaaag                             >  1:1204942/1‑121 (MQ=255)
                                                                                                      tttA‑TG‑‑CT‑C‑GT‑‑‑TTT‑TTTTT‑TTTTTTTTT‑ACAAAAATATAATTTATTTTATTAAACTTATATTTATTTTTAATAAAAATGTAAAAGAAAGTGAATTTTAATAATAATTTAATTAAATATATAAAAAttt                             >  2:857260/1‑126 (MQ=255)
                                                                                                         a‑TG‑‑CT‑C‑GT‑‑‑TTT‑TTTTT‑TTTTTTTTT‑ACAAAAAAATAATTTTTTTTATTAAAAGTTTATTTTTGTTTAATAAAAATGGAAAAGAAATTTATTTTAAATAATATTTTATTTAAAAATTTAACAAttaaat                          >  2:1358893/1‑123 (MQ=255)
                                                                                                         a‑TG‑‑CT‑C‑GT‑‑‑TTT‑TTTTT‑TTTTTTTTT‑AAAAAAAAATAATTTATTTTATTAAACGTATATTTATTTTTAATAAAAATGTAAAAAAAATTTAATTTTAATAATAATTTAATTAAATATATAAAAATTTaat                          >  1:112760/1‑127 (MQ=255)
                                                                                                           tG‑‑CT‑C‑G‑‑‑‑TTT‑TTTTT‑TTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATTTTTAATAAAAATGGAAAATAAAGTTAATTTTAATAATAATTTAATTAAATATATAAAAATATAAttt                        >  1:829355/1‑128 (MQ=255)
                                                                                                                tttttttttttt‑ttttt‑ttttttttt‑ATAATTATATAATTTATTTGATTAAATTTATATTTATTTTTAATAAATATGGATAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTaa                           <  2:2819163/119‑1 (MQ=255)
                                                                                                                tttgtttttttt‑ttttt‑ttttttttt‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTaa                           <  2:3462476/119‑1 (MQ=255)
                                                                                                                  tttttttttt‑ttttt‑ttttttttt‑AAAAAAATATAATTTATTTGATTAAAATTATATTTATTTTTAATAAAAATTTAAAATAAAGTTAATTGTAATAATAATTTAATTAAATATATAACAATGTAAGt                         <  1:108526/121‑1 (MQ=255)
                                                                                                                  ttg‑‑‑‑TTT‑TTTTT‑TTTTTTTTT‑ACATAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTa                     <  2:3533405/126‑1 (MQ=255)
                                                                                                                       ttttt‑ttttt‑ttttttttt‑ATAAATATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTaa                    <  2:270417/126‑1 (MQ=255)
                                                                                                                       gtttt‑ttttt‑ttttttttt‑AAAAAAATATAATTTATTTTATTAAACGTTTTTTTATTTTTAATAAAAATGTAAAATAAATTTATTTTTAAAAATAATTTAATTAAATATATAAAAATTAAAGTTTTaa                    >  1:1298578/3‑128 (MQ=255)
                                                                                                                         ttt‑ttttt‑ttttttttt‑AAAAATATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGTAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTaaaa                  <  1:2168251/128‑1 (MQ=255)
                                                                                                                         ttt‑ttttt‑ttttttttt‑AAAAAAATATAATTTATTTTATTAAACGTATTTTTATTTTTAATAAAAATGGAAAAAAAATTTAATTTTAATAATAATTTAATTAAATATATAAAAATTTAATTTTTaaaa                  >  1:2228256/1‑128 (MQ=255)
                                                                                                                         gtt‑ttttt‑ttttttttt‑ACAAAAATTTAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATTGAAAAGAAATTAAATTTTAATAATAATTTAATTAAATATATAACAATTTAAGTTTTaaaa                  >  1:3241652/2‑128 (MQ=255)
                                                                                                                          tt‑ttttt‑ttttttttt‑ATAAATATATTATTTATTTGATTAAATTTATATTTATGTTTTATAAAAATGTAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAac                 <  2:148175/128‑1 (MQ=255)
                                                                                                                          tt‑ttttt‑ttttttttt‑AAAAAAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAac                 <  1:1001516/128‑1 (MQ=255)
                                                                                                                             ttttt‑ttttttttt‑ATTTAATTATATTTTATTTTATTTATATTATATTTATTTTTAATAAAAATGTAAAAGAAAGTTAATTTTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAactt               <  2:606343/128‑1 (MQ=255)
                                                                                                                             ttttt‑ttttttttt‑A‑TATAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATTGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAactta              <  2:1588387/128‑1 (MQ=255)
                                                                                                                              tttt‑ttttttttt‑ATAAATATATAATTTATTTTATTAAAATTATATTTATTTTTAATAATAATTTAAAATAAATTTATTTTTCATAATAATTTAATTAAATATATAAAAATTTAAGTTTTAAAactta              <  1:503926/128‑1 (MQ=255)
                                                                                                                                tt‑ttttttttt‑AAAAAAATATAATTTATTTGATTAAACGTATATTTATTTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAacttact            <  1:774981/128‑1 (MQ=255)
                                                                                                                                   ttttttttt‑ACAAAAATATAATTTATTTGATTTAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATATTTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACttt          <  2:1907865/128‑1 (MQ=255)
                                                                                                                                   ttttttttt‑AAATAAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACttt          <  2:3788094/128‑1 (MQ=255)
                                                                                                                                    tttttttt‑ACAAAAATATAATTTATTTGTTTAAACGTATTTTTTTGTTTAATAAAAATGTAAAATAAAGTGAATTTTAATAATAATTTAATTAAATATATAAAAAATTAATTTTTAAAAATTACtttt         >  1:2547858/1‑128 (MQ=255)
                                                                                                                                    tttttttt‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAATAAAGTAAATTGTCATAATAATTTAATTAATTATATAACAATTTAATTTTTATAACATAAtttt         >  2:416927/1‑128 (MQ=255)
                                                                                                                                    tttttttt‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACtttt         <  2:2030765/128‑1 (MQ=255)
                                                                                                                                    tttttttt‑ACAAAAATATAATTTATTTGATTAAAAGTATATTTATTTTTAATAAAAATTGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACtttt         <  1:3301936/128‑1 (MQ=255)
                                                                                                                                     ttttttt‑ACAAATATATAATTTATTTGATTAAACTTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACttttt        <  1:3536820/128‑1 (MQ=255)
                                                                                                                                     ttttttt‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACttttt        <  1:431210/128‑1 (MQ=255)
                                                                                                                                         ttt‑ACATAAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGtt    <  2:1052631/128‑1 (MQ=255)
                                                                                                                                          tt‑ACAATTATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGttt   <  2:1110921/128‑1 (MQ=255)
                                                                                                                                              |                                                                                                                             
GAAAACTACTAGCACTTTTTTAAAAAA‑TTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑‑TTTTA‑TG‑‑CT‑C‑G‑‑‑‑TTT‑TTTTT‑TTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTT  >  CP016816/420127‑420378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑