Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816165,2500T.58.6% 244.9 / inf 1018intergenic (+214/‑328)JCVSYN2_00665/JCVSYN2_00670tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser
Reads supporting (aligned to +/- strand):  ref base T (229/172);  new base . (416/151);  total (651/367)
Fisher's exact test for biased strand distribution p-value = 1.90e-07
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1262 total aligned reads displayed.

ATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAA  >  CP016816/165123‑165376
                                                                                                                                |                                                                                                                               
  aataTTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttt                                                                                                                               >  2:2887439/1‑128 (MQ=255)
   atatTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtttt                                                                                                                              >  1:497225/1‑128 (MQ=255)
   atatTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtttt                                                                                                                              >  1:1352197/1‑128 (MQ=255)
   atatTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGAtttt                                                                                                                              >  2:2392123/1‑128 (MQ=255)
       ttAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTAGTATCTTTTTAGATATTATTTGTAGATGCAAATTTTTAAAAAAGTAATTTGAACTTGAAAAAAATAGCttttttgt                                                                                                                          >  2:3482609/1‑126 (MQ=255)
        tAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttttttt                                                                                                                         >  2:1668176/1‑128 (MQ=255)
        tAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttttttt                                                                                                                         >  1:1592325/1‑128 (MQ=255)
        tAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAAAAAATAAAAAAATTATCTTTTTATATATTTTTTGTATATGCAAATTTTTAAAAAATAAATTTTAACTTGAAAAAAATAGAttttttttt                                                                                                                         >  2:2004727/1‑128 (MQ=255)
        tAGGTTCATTAATTTATCGCACTTGGATGAATTAGTAAGAAACTAAAACTATTATCTTTTTACTTATTTTTTTTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttttttt                                                                                                                         <  2:3718087/128‑1 (MQ=255)
          ttttCAATAAATTATCTCAATTGTATTTATTATTAATAAAATAAAAAAATTATTTTTTTTGTTATTTTTTTTATATTCAAATTTTTAAAAAATTAAATTTAACTTTTAAAAAATAGCttttttttttt                                                                                                                       <  2:3445399/127‑1 (MQ=255)
           tttCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATATCtttttttttttt                                                                                                                      >  1:849874/1‑128 (MQ=255)
               aTTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtttttttttttttttt                                                                                                                  >  1:1677665/1‑128 (MQ=255)
               aTTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtttttttttttttttt                                                                                                                  >  1:3329247/1‑128 (MQ=255)
               aTTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtttttttttttttttt                                                                                                                  >  1:3866794/1‑128 (MQ=255)
               aTTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGAtttttttttttttttt                                                                                                                  >  1:1914848/1‑128 (MQ=255)
                ttAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttttttttttttttt                                                                                                                 >  1:2179805/1‑128 (MQ=255)
                ttAATTTATAGCACTTTTATGAATTATTAATAAAATAAAACTATTATCTTTTTTTTAATTTTTTTTAAATTCAAATTTTTAAAAAAATAATTTTAACTTTTAAAAAATACCttttttttttttttttt                                                                                                                 <  1:1823122/128‑1 (MQ=255)
                 ttaTTTATAGTAATTGTATTAATTATTAATTAACAAAAAATTTTATCTTTTTATTTATTTTTTGTATATTCAAATTTTTAAAAAATTAATTTTAAATTTTAAAAAATATCtttttttttttttttata                                                                                                                <  2:277216/126‑4 (MQ=255)
                    tttATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttttttttttttttttata                                                                                                             >  2:2958287/1‑125 (MQ=255)
                    tttATAGCAATTGTTTTAATTATTAAGAAAATAAAAATATTATATTTTTATATATTTTTTGTATATTCAAATTTTTAAAAAATTAATTTTAAATTTTAAAAAATAGCttttttttttttttttttata                                                                                                             <  2:1105166/128‑4 (MQ=255)
                         cgaaattttATGAATTAGTAATAAAATAAAAATATTTTCTATTTAGATATTTTTTGTATATTCAAATTTTTAAAAAATTAATTTTAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTATAATGGa                                                                                                       <  1:1720060/120‑1 (MQ=255)
                         cGCACTTTTATTAATTAGTAATAAAATAAAAATATTTTCTTTTTATATATTTTTTGTATATTAAAATTTTTAAAAAATTAATTTTAAATTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATgg                                                                                                        <  1:2259741/128‑1 (MQ=255)
                         cGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATATCttttttttttttttttttaaaatgaa                                                                                                        >  1:3726617/1‑120 (MQ=255)
                             cTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTtaaatgaaatta                                                                                                    >  2:2836120/1‑118 (MQ=255)
                             cTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAAATTGTAAAAAATAGATTTTTTTTTTTTTTTTtataatttaaatat                                                                                                    >  1:2861950/1‑118 (MQ=255)
                              ttGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTTAATTTAAatat                                                                                                  >  2:1845229/1‑128 (MQ=255)
                              ttGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTAAAAATGTAAata                                                                                                   >  2:3318471/1‑128 (MQ=255)
                              ttGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTATAATGTAAatat                                                                                                  >  2:61811/1‑128 (MQ=255)
                                ttatttattattAATAAAATAAAAATATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAAATTGAAATTTTAAAAAATAGCTTTTTTTTTTTTTTTTTTATAATGGAAATATaa                                                                                                <  1:805507/122‑1 (MQ=255)
                                 tttgtttttgTAATAAAATAAAAATTTTTTTTTTTTTTATATTTTTTTTATATTAAAATTTTTAAAAAATTAATTTTAAATTTTAAAAAATATCTTTTTTTTTTTTTTTTTTATAATGGAAATATaaa                                                                                               <  2:1334051/119‑1 (MQ=255)
                                 taattaTTAATAATAAAATAAATATTTTTTATTTTTTTTTATTTTTTGTATATGAAATTTTTTAAAAAAATAATTTTAAATTTTTAAATATAG‑‑ATTTTTTTTTTTTTTTTTATAATGTAAATATAAAt                                                                                              <  1:1439399/123‑1 (MQ=255)
                                 tATTAATTATTAAAAAAAAAAAAAAATTTTTTTTTTATATTATTTTTTTATATTCAAATTTTTAAAAAATTAATTTTAACTTTTAAAAAAAATCTTTTTTTTTTTTTTTTTTATAATGGAAATATaaa                                                                                               <  2:3781912/128‑1 (MQ=255)
                                 tATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTTTAAtaaaaaataaa                                                                                                >  2:1461104/1‑118 (MQ=255)
                                  aTGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGAAAATATAAAtt                                                                                             >  1:3189404/1‑128 (MQ=255)
                                       ttttttattaaataaaattaTTTTTTTTTTTTATATTTTTTTTTTATTGAAATTTTTAAAAAATTTATTTTATATTTTTAAAAATATTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAg                                                                                         <  2:683777/116‑1 (MQ=255)
                                         tttAAGAAAATAAAACTATTATTTTTTTATTTATTTTTTTTTTATTTAAATTTTTAAAAAATTAATTTTAAATTTTAAAAAATATCTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGt                                                                                       <  2:3163120/126‑1 (MQ=255)
                                         aGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAAATAAAATATAAAttttttt                                                                                        >  2:353472/1‑125 (MQ=255)
                                         aGTAAGAAAATAAAACTATTATCTTTTTATATAATTTTTGTATTTGCAAATTTTTAAAAAATTAATTTGAACTTGTTAAAAATAGCTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGt                                                                                       <  2:3880863/128‑1 (MQ=255)
                                          gttaGAAACTAAAAATTTTTTTATTTTTTTTATTTTTTTTTTATTGAAATTTTTAAAAAATTAATTTGAAATTTTAAAAAAAAGCTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTa                                                                                      <  2:1581044/125‑1 (MQ=255)
                                           tAACAAACTAAAAATTTTTTTTTTTTTTTTATTTTTTGTATATGCAAAATTTTTAAAAATTAATTTGTAAATTTTAAAAAAATG‑‑GTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTAt                                                                                     <  2:2187099/128‑1 (MQ=255)
                                            aaGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATTTTATTTTAAATTTTatttat                                                                                     >  2:3031731/1‑123 (MQ=255)
                                            aaGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATTTAAAATAAAATTTTattttt                                                                                     >  2:261404/1‑123 (MQ=255)
                                              gAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATTTAATTAAAAATTTTATTTAttttt                                                                                 >  1:2509306/1‑127 (MQ=255)
                                              gAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATTGAAATATAAATTTTattttttttt                                                                                 >  2:2088657/1‑119 (MQ=255)
                                                 actaaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTAAAATTTAAAAAAAAATTTAAGTTATTttgtt                                                                               >  1:964438/1‑128 (MQ=255)
                                                  ctaaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTATAATGTAATTATAAATTTTatttttttttttt                                                                              >  1:3061906/1‑116 (MQ=255)
                                                  ctaaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTATAATGGAAATAAAATTTTTAGGTATTtttttg                                                                              >  1:1131582/1‑128 (MQ=255)
                                                   taaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGTAATAAAAAATTTTattattttttttt                                                                              >  1:2660444/1‑116 (MQ=255)
                                                   taaaacaaTTATATTTTTATTTATTTTTTTTATTTTGAAATTTTTAAAAAATTAATTTTTAATTTTAAAAAATATCTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTtgttgt                                                                             <  1:3137395/128‑1 (MQ=255)
                                                     aaaattttatTTTTTTTTTTATTTTTTGTTTTTTTAAATTTTTAAAAAATTAATTTTAAATTTTAAAAAATATTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCt                                                                           <  1:10008/122‑1 (MQ=255)
                                                      taattttttatttttATTTATTTTTTTTATTTGAAATTTTTTAAAAAATAAATTTTAAATTTTAAAAAAATTATTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTa                                                                          <  1:2027571/118‑1 (MQ=255)
                                                      taatttattCTTTTTATATATTTTTTGTTTATTCAAATTTTTAAAAAAATAAATTTAAATTTTTAAAAATATCTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTa                                                                          <  1:652283/120‑1 (MQ=255)
                                                      aaatattttatttTTTTATATTTTTTTTTTTTTAAAATTTTTTAAAAATTTATTTTTAATTTTTAAAAATATTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTa                                                                          <  1:2329520/125‑1 (MQ=255)
                                                      aaatattatAATTTTATAAATTTTTTTTATTTACAAATTTTTAAAAAATTAATTTTTAATTTTAAAAAATACCTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTa                                                                          <  1:2413379/125‑1 (MQ=255)
                                                       actaTTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATTAAATAATAAATTTTAGTTATtttttttacta                                                                          >  2:3100878/1‑123 (MQ=255)
                                                          aatttCTTTTTATAAATTTTTTTTATTTTCAAATTTTTAAAAAATTAATTTTAAATTTTAAAAAATA‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAt                                                                     <  2:1033786/124‑1 (MQ=255)
                                                           ttatTTTTTTTTATATTTTTTTTTATTTCAAATTTTTAAAAAATTAATTTTAAATTTTAAAAAATATCTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAt                                                                     <  1:125665/128‑1 (MQ=255)
                                                           ttatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTATTTTTTTTTTAAATTTAAAAAAAAATTTTTATGAATTTttttgtaatatat                                                                      >  1:3632057/1‑121 (MQ=255)
                                                            ttattttttttttatTTTTTTTATATTTAAATTTTTTAAAAATTAATTTTTAATTTTAAAAAATATCTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATc                                                                    <  1:1964682/116‑1 (MQ=255)
                                                            tataTTTTTATATATTTTTTTTATATTTAAATTTTTAAAAAAATAATTTTAAATTTTAAAAAAAATGTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATc                                                                    <  1:2968889/128‑1 (MQ=255)
                                                            tataTTTTTATATATTTTTTGTATATGTAAATTTTTAAAAAATTAATTTTAAAATTTAAAAAATATGTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATc                                                                    <  1:3767262/128‑1 (MQ=255)
                                                                ttttttttatttttttttATATTAAAATTTTTAAAAAATTAATTTTTAATTTTAAAAAATA‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTaaaa                                                               <  2:3262987/118‑1 (MQ=255)
                                                                 ttttATATATTTTTTTTTTTTTTAAATTTTTAAAAAATTTTTTTTTAATTTTAAAAAATATTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTATGTATTTTGTTGTCTAAGTATCTaaaa                                                               <  1:723268/128‑1 (MQ=255)
                                                                 ttttAGTTATTTTTTGTTTATGCAAATTTTTAAAAATTTAATTTTTAATTTTTAATAAT‑‑‑TTATTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTaaaaaa                                                             <  1:2567097/128‑1 (MQ=255)
                                                                 ttttAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTATAATTGAAATATAAATTTTAGTTATTTTTTTGTAAAATTATATaaaa                                                               >  1:3478788/1‑128 (MQ=255)
                                                                  ttttttttttttttttttATTTAAATTTTTTAAAAATTTATTTTTAATTTTAAAAAATATCTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTaaaaa                                                              <  1:3816572/120‑1 (MQ=255)
                                                                  tttAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGAAAATATAAATTTTAGTTATTTTGTTTTCTAAGTTTATaaaaaa                                                             >  1:3600372/1‑128 (MQ=255)
                                                                     ttttatTTTTTTTATATTTAAATTTTTTAAAAATTAATTTTAAATTTTTAAAAATTTGTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAAt                                                           <  2:1167777/125‑1 (MQ=255)
                                                                       atatTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTTAATGTATATTAAAATTTTTGGTATTTTTTGTTCTAAGTATATAAAAAAATat                                                         >  2:251101/1‑127 (MQ=255)
                                                                       aaatTTTTTGTATATTAAAATTTTTAAAAAATAAATTTTAACTTTTAAAAAAAA‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGa                                                        <  2:3394878/126‑1 (MQ=255)
                                                                         atTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTT‑‑TAATGGAAATATAATTTTTACGTTTTTTGTTTTCAAATTAACAAAAAAAATAaaaa                                                      >  2:1910034/1‑128 (MQ=255)
                                                                           tttttGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATTTAAAAAAAAATTTAATTTATTTTGTTGTATAATTATCTAAAAAAAAATAAAga                                                    >  2:2681059/1‑127 (MQ=255)
                                                                               tGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTATATTGAAAAAATAAATTTTATTTATTTTTTTTTTTAATTTaataaaaaaataaaaattaaa                                                 >  2:861427/1‑123 (MQ=255)
                                                                                 tataTGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTATAATGGAAAAATAAATTTTATGTATTTTTTTTTATAATTATATAAAAAAATAAAAATTaaaaa                                               >  1:341268/1‑128 (MQ=255)
                                                                                       cAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATTTAAATAAAAATTTTAGTTATTTTTTTTTATAATTATATAAAAAAATATAAATTAAAAAATAtttt                                        >  1:887524/1‑126 (MQ=255)
                                                                                       cAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGAAAATATAAATTTTAGTTTTTTTGTTGTATAATTTTATAAAAAAAAAGAAAGCAAAAAATAtttt                                        >  2:777294/1‑126 (MQ=255)
                                                                                         aaTTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTATAATGTAAAAAAAAATTTTAGTTATTTTTTTTTATATTTATATAAAAAAATATAAAGAAAAAAATATtttt                                       >  1:560484/1‑128 (MQ=255)
                                                                                         aaTTTTAAAAAAATAATTTTTAATTTTAAAAAATA‑‑‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTaaaa                                   <  1:427594/128‑1 (MQ=255)
                                                                                          aTTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATTTAATTATAAATTTTTGTTATTTTTTTTTATATTTATATAAAAAATTAAAAATTAAAAAATTTTGtt                                       >  1:290752/1‑128 (MQ=255)
                                                                                                  aaaattaattTTAAATTTTAAAAATT‑‑TTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATa                             <  2:2142398/126‑1 (MQ=255)
                                                                                                    aattaattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTAAATTGAAAATAAAATTTTTATTTATTTTTTTTTATATTTTTATAAAAAAATATAATTTAAAAATTTTTTTTAAATTTAATa                             >  1:2793898/1‑128 (MQ=255)
                                                                                                     attaattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTATATTTTATATATAATTTTTATTTTTTTTGTTGTATAATTATATAAAAAAATAGAAATTAAAAATTTTTTTTAATATTaaaaat                           >  1:3293030/1‑124 (MQ=255)
                                                                                                      ttaattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTTAATTTAAATATAAATTTTTGGTTTTTTGTTTTATAATTATATAAAAAAATATAAAGTAAAAAATATTGTTAAAATTAataata                          >  1:3256346/1‑128 (MQ=255)
                                                                                                      ttaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTAAAATTGAAATATAATTTTTTGTTTTTTTTTTGTATAATTATATAAAAAAATATAAAGGAAAAAATATTTTTTAAATTAAAAATaa                         >  2:3609864/1‑128 (MQ=255)
                                                                                                       taattATAAATTGTTAAAAATATCTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTaa                         <  1:1199126/128‑1 (MQ=255)
                                                                                                        aattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTAAAATGTAAAAAAAAATTTTTGTTTTTTTATTTTAAAATTAAATAAAAAAATAAAAATAAAAAATTTTTTTTAAAATTATTAATaaa                        >  2:3824182/1‑128 (MQ=255)
                                                                                                               aaCTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTATATTGGAAATATAAATTTTAGTTATTTTTTTGTATAATTAAATAAAAAATAATAAAGTAAAAAAAATTTTTAAAATTAATAATAaattaatt                  >  2:1240067/1‑128 (MQ=255)
                                                                                                               aaCTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGTTATTTTTTTTTATAATTATATAAAAAAATAGAAAGGAAAAAATTTTTTTAAAAGTATTAATAAAattaag                  >  1:3525709/1‑126 (MQ=255)
                                                                                                                 attttAAAAAATTTTTTTTTTTTTTTTTTTTTTTATAATTGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTAttt                 <  1:175451/124‑1 (MQ=255)
                                                                                                                  ttttAAAAAATATCTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTaa               <  1:2054876/125‑1 (MQ=255)
                                                                                                                     aaaaatatttttttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATg            <  2:895644/117‑1 (MQ=255)
                                                                                                                      taaatatttttttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGt           <  1:1499924/118‑1 (MQ=255)
                                                                                                                       ttaaaattttttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGtt          <  2:1729679/119‑1 (MQ=255)
                                                                                                                       taatatatttttttttttttttttttttATTATGGAATTATAATTTTTAGGTTTTTTGTTGTATAAGTATCTAAAAAAATAGAAATGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGtt          <  2:524689/119‑1 (MQ=255)
                                                                                                                          aaaatatttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaat       <  1:2134325/122‑1 (MQ=255)
                                                                                                                           aTAGCTTTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTATTTATTTTTTTGTATAATTATAAAAAAAAATTTAAATGAAAAAATATTTTTAAAATTAATAATAAAATTATTTAATTtaaatt      >  1:2720789/1‑128 (MQ=255)
                                                                                                                            ttattttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatta     <  1:1046129/124‑1 (MQ=255)
                                                                                                                            attttttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatta     <  2:951426/124‑1 (MQ=255)
                                                                                                                            aatttttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatta     <  2:451382/124‑1 (MQ=255)
                                                                                                                             ttttttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTATAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAAGTTttaatta     <  2:2287204/125‑1 (MQ=255)
                                                                                                                                |                                                                                                                               
ATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAA  >  CP016816/165123‑165376

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: