BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	202,480	0	T	A	34.1%	208.9 / 128.4	335	intergenic (+258/‑417)	JCVSYN2_00840/JCVSYN2_00845	hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand): ref base T (99/119); new base A (38/75); total (140/195)
Fisher's exact test for biased strand distribution p-value = 4.55e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 363 total aligned reads displayed.

TAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAA‑AAT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATAT  >  CP016816/202353‑202603

tattGAAGTTAGTTTAAATAAAAGAGTTAAGGTTAATTAAAATACCATAAAATTAATAATTATTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAt                                                                                                                                <  1:2943544/125‑1 (MQ=255)

 tttGAATTTAGTGTAAATATTTTTCTTAATTTTAATTAAAATACAATATACTTAATAATTCTTATATAGTTGATCTTAGTTATCTTATTTTTTATTTGTTTATCTTAACAAAT‑AAAAAAATAACAATc                                                                                                                               <  2:2600001/126‑1 (MQ=255)

 agtGAATTTATTGTAAATAATAGATTTAATGTTAATTAAAATACAATAAACTTAATAATTCTTATAATGTAGATAATCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATc                                                                                                                               <  1:1834260/128‑1 (MQ=255)

 agtGAATTTATTGTAAATAATAGAGTTAATGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATc                                                                                                                               <  2:508494/128‑1 (MQ=255)

 agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATc                                                                                                                               <  2:1428879/128‑1 (MQ=255)

  gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATcc                                                                                                                              <  1:401077/128‑1 (MQ=255)

  gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTATTTTATTTGTAAATCATCACAAAT‑AAAAAAAAAACAAtac                                                                                                                              >  2:3837533/1‑126 (MQ=255)

    taaGTTAGTTTAAAAAATATAGTTAAGGTTAATTAAAAAACCAAAAACTAAAAAATTCTTATAATGTATAACCTCGTTATATATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATcccc                                                                                                                            <  1:282636/127‑1 (MQ=255)

    gAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATcaaa                                                                                                                            >  2:462045/1‑125 (MQ=255)

       gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTAATTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAACACAATCCACtaaa                                                                                                                        >  1:489200/1‑125 (MQ=255)

        ttAGTGTAAATAATAGAGTTAAGTTTAATTAAAATAACATAAACATAATAATTCTTATAATGTATATACTAGTTATCTATTATTTTAATTTTTTATATTAACAAAA‑AAAAAAAAAACAATcaacttaa                                                                                                                        >  2:3413936/1‑121 (MQ=255)

        ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCACttaa                                                                                                                        >  2:3534162/1‑126 (MQ=255)

         tAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATTTTTTTATTTCTTTATCTTCACAAAT‑AAAAAAAAAACAAAACCCtaaaa                                                                                                                       >  2:3885943/1‑124 (MQ=255)

         tAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATAATCTTGATCTATTTTTTAATATATTAATCTTCACAAAT‑AAAAAAAAAACAAtaaaaataaa                                                                                                                       >  1:375762/1‑119 (MQ=255)

          attgtAAATAAAATAGTTAATTTTAATTAAAATAACATAAAATTAATAATTCTTATAATTTATAAACTCGTTATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCttaaaa                                                                                                                      <  1:102321/126‑5 (MQ=255)

          aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCttaaaa                                                                                                                      >  2:3265749/1‑124 (MQ=255)

              tAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAATCAATCCACttaaaaatta                                                                                                                  >  2:1465842/1‑120 (MQ=255)

                aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAAAATGTAGATCCTCGTGATCTATTTTTTTATTTGATTATCTACACAAAT‑AAAAAAAAAACAAAccccaaaaaaaataaa                                                                                                                >  2:2470416/1‑116 (MQ=255)

                 ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAAAACCC‑CTaaaaa‑aat‑aaa                                                                                                            >  1:3081183/1‑128 (MQ=255)

                 ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATATATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAAAAATCACC‑‑Ttaaaa‑att‑aaaa                                                                                                           >  2:3141242/1‑128 (MQ=255)

                  taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATc                                                                                                                               >  2:1092261/1‑111 (MQ=255)

                  taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTAATTTTTTATTTTTTTATCTTCAAAAAT‑AAAAAAAAAACAAACCCAATaaaaaa‑aaa‑aaa                                                                                                            >  2:2403657/1‑128 (MQ=255)

                   aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAACAAACAC‑ATtaaaa‑aat‑aaaaa                                                                                                          >  1:3335139/1‑128 (MQ=255)

                   aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCCAC‑‑Ttaaaa‑att‑aaaaaa                                                                                                         >  2:3741979/1‑128 (MQ=255)

                     taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑‑TAAAA‑AAT‑taaaaaaaa                                                                                                      >  1:3263757/1‑128 (MQ=255)

                      agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCTTCGTGATCTAATATTATATTTGTATATCTTCACAAAT‑AAAAAAAAAACAAACCAC‑‑‑AAAAA‑AAT‑aaaaaaaaa‑a                                                                                                    >  2:2223241/1‑128 (MQ=255)

                          ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGCTATATTTTTTTATTATTTTATATTAAGAAAT‑AAAAATAAAACAATAC‑‑‑AATAAAa‑aat‑aaaaaaaat‑aaaaa                                                                                                >  2:2110148/1‑128 (MQ=255)

                          ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAATACCC‑‑TTAAAA‑ATT‑aaaaaaaaa‑aaa                                                                                                  >  2:2299585/1‑128 (MQ=255)

                           tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAAAAAACACCTT‑‑‑AAA‑AAT‑aaaaaaaaa‑aaaaaa                                                                                               >  2:1061279/1‑128 (MQ=255)

                            tattttaaataaAATAACATAAAATTAAAAATTATTTAAATTTATATACACGTTTTATATTTTTTTATTTTTTTATATTAACAAAT‑AAAAAAAAAACAATACCC‑‑TTAAAA‑ATT‑aaaaaaaaa‑aaaaaa                                                                                               <  1:3544420/124‑1 (MQ=255)

                            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaa‑aaaaaa                                                                                               >  2:3619315/1‑128 (MQ=255)

                            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCC‑‑ATTAAAA‑ATT‑aaaaaaaaa‑aaaaaa                                                                                               >  2:3022784/1‑128 (MQ=255)

                            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTATTATATTTCTTTATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑‑TAAAA‑AAT‑taaaaaaaa‑aaaaaaa                                                                                              >  2:203155/1‑128 (MQ=255)

                             atgTTTATTAAAATAAAATAAAATTAATAATTTTTATAATTTTTTTACTTGTTTTTTATTTTTTTTTTTTTTTATTTTAAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaa‑aaaaaaa                                                                                              <  2:2997617/126‑1 (MQ=255)

                             aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTAATTTTTTATTTTATTATCTACACAAAT‑AAAAAAAAAAAAATAACAATAaaaaa‑aaa‑aaaaaaaaa‑aaaaa                                                                                                >  2:100192/1‑128 (MQ=255)

                             aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAAACCC‑‑‑ATAAAA‑AAT‑aaaaaaaaa‑aaaaaaaa                                                                                             >  2:1952218/1‑128 (MQ=255)

                              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaa‑aaaaaaaa                                                                                             >  2:3173428/1‑128 (MQ=255)

                              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATATATATAATCGTGATCTATTTTATTATTTATATATATTAACAAAT‑AAAAAAAAAAAAAAAAC‑‑AATAAAA‑AAT‑aaaaaaaaa‑aaaaaaaa                                                                                             >  2:2673967/1‑128 (MQ=255)

                               gTTAATTAAAATAACATAAAATTAAAAATTAATAAAATTTTGATACTTTTTTTATATTTTTTTAATTTTTTATATTAACAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAA‑ATT‑aaaaaaaaa‑aaaaaaaaa                                                                                            <  1:1287151/128‑1 (MQ=255)

                                ttaattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATACAC‑‑TTAAAA‑ATT‑aaaaaaaaa‑aaaaaaaaaa                                                                                           >  1:2930303/1‑128 (MQ=255)

                                ttaattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATATTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAACAAT‑‑AAAATTAAAA‑ATT‑aaaaaaaaa‑aaaaaaaaaa                                                                                           >  1:1534056/1‑128 (MQ=255)

                                 taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaa‑aaaaaaaaaaa                                                                                          >  1:3246749/1‑128 (MQ=255)

                                  aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAACAATCCACTAaaaaaa‑aaa‑aaaaaaaaa‑aaaaaaaaaa                                                                                           >  2:1563664/1‑128 (MQ=255)

                                  aaataaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAAAAAACAAC‑‑‑AAAAA‑AAT‑aaaaaaaaa‑aaaaaaaaaaaaa                                                                                        >  2:128951/4‑127 (MQ=255)

                                   attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAACAAACAC‑‑AAAAAAA‑ATT‑aaaaaaaaa‑aaaaaaaaaaaaa                                                                                        >  2:1761560/1‑127 (MQ=255)

                                   attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaa‑aaaaaaaaaaaaa                                                                                        >  2:2943664/1‑127 (MQ=255)

                                     taaaataaaaAAAACTTAAAAATTATTATAATTTATATCCAAGTTTTCTATTTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AAA‑AAT‑TAAAAAAAA‑AAAAAAAAAAAACTaa                                                                                     <  1:2342439/128‑1 (MQ=255)

                                       aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTAAAAAT‑aaa‑aaaaaaaaa‑aaaaaaaaaaaaaac                                                                                      >  2:890151/1‑125 (MQ=255)

                                        aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑Aaaaaaaaa‑aaaaaaaaaaaaaaaaaa                                                                                   >  2:3444236/1‑128 (MQ=255)

                                                 aaattAATAAATATTAAAATTTATATACCCGTTATTTATTTTTTTAATTTTTAAAATAAAAAAAA‑AAAAAAAAAACAAACCCCTT‑‑‑AAA‑ATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTa                                                                         <  1:1473473/125‑1 (MQ=255)

                                                 aaCTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAA‑AAAAAAAAAAAACaaaaaaacaaataa                                                                          >  1:2057100/1‑120 (MQ=255)

                                                  aattAAAAAATATTATAATTTATATCCACGTTATATATTTTTTTATTTTTTTATAATAAAAAAA‑AAAAAAAAAAAAAACCCC‑ATAAAAA‑TTA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAActct                                                                          <  1:2166069/126‑1 (MQ=255)

                                                      taaaaataattaaaTCTACATCCCCTTTATCTATTTTTTTATTTTTTTAAATTAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAAA‑ATA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTATATTTc                                                                     <  2:676908/116‑1 (MQ=255)

                                                      aataaaTCTTATTATTTTCTTACTCGTGATAAATTTTTTTATTTGTTTATCTT‑ACAAAA‑AAAAAAAAAAAAAAACCCCTT‑‑AAA‑AAT‑TAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCt                                                                    <  1:3374986/128‑1 (MQ=255)

                                                       aaaaatattttaATGTATATCCTCCTGATCTATTTTTTTATTTTTTTATCTTAACAAAA‑AAAAAAAAAACAAACCCC‑‑TTAAAA‑ATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCt                                                                    <  1:3837533/118‑1 (MQ=255)

                                                          aatCTTATAATGTAGATCCTCGTGATCTATTATTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAA‑‑ACCAAAAAAAA‑ATT‑AAAAAAAAATAAAAAAAAAAAAAAAAAAACAAACTAAAtttataa                                                                  >  2:919304/3‑124 (MQ=255)

                                                            ttataaaaTTTATATACTAGTTATCTATTTTTTTAATTTTTTAACTTAAAAAAA‑AAAAAAAAAAAAAACCCC‑TTAAAAA‑TTA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaa                                                                <  1:1071951/122‑1 (MQ=255)

                                                                     ttAGATACTCGTTTTTTTTTTTTTTTTTTTTTTTTATT‑AAAAAA‑AAAAAAAAAAAAAACACC‑TTAAAAT‑ATA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatt                                                      <  2:773712/127‑1 (MQ=255)

                                                                       ttaacatCGTTATCAATTTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑ATAAAA‑ATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                    <  1:2970013/122‑1 (MQ=255)

                                                                       aGATCCTAGTTTTATATTTTTTTTTTTTTTTTTATTAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAA‑ATA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                    <  1:3619315/128‑1 (MQ=255)

                                                                         ttaatatttttttatttttttattttttTATATAAAAAAAA‑AAAAAAAAAAAAATAAAC‑‑TTAAAA‑ATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                  <  1:9716/116‑1 (MQ=255)

                                                                          tacTCGTTATCTATTTTTTTATATGTTTATATTAACAAAT‑AAAAAAAAAACAATACCCTT‑‑‑AAA‑AAT‑‑TAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                               <  1:579526/126‑1 (MQ=255)

                                                                          actattttaaatatttttttattttttTAAATAAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TAAAAA‑ATA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                 <  1:731522/117‑1 (MQ=255)

                                                                             ttgttttattttttttttttttttTATTTTAAAAAAA‑AAAAAAAAAAAAATAACATTAAAAAATAAA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                 <  1:212113/118‑1 (MQ=255)

                                                                             aattttacttttttttttttttttTATCTTCACAAAA‑AAAAAAAAAAAAATACCCTTAAAAAT‑AAA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                <  1:1656139/118‑1 (MQ=255)

                                                                              tttatatattttttttATTT‑TTTATATTAACAAAA‑AAAAAAAAAAAAATCACCTT‑‑‑AAA‑AAT‑TAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                           <  1:3572385/119‑1 (MQ=255)

                                                                               tttattaaTTTTTATAATTTTTTATATTAACAAAA‑TAAAAAAAAAAAATAACCATT‑‑AAA‑ATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                            <  1:1347108/121‑1 (MQ=255)

                                                                                ttatttatttttttattttttTATATTTAAAAAT‑AAAAAAAAAA‑AATACCC‑TTAAAAA‑ATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                           <  1:2014184/123‑1 (MQ=255)

                                                                                tgttCTATTTTTTTTTTTTTTTTTATTTAAAAAA‑AAAAAAAAAAAAAATCCC‑‑ATAAAA‑AAT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                           <  2:3674263/125‑1 (MQ=255)

                                                                                  tatatattttttatttttttatAATTAAAAAA‑AAAAAAAAAAAAAAACCCCTTAAAAA‑TAA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                           <  1:3127413/122‑1 (MQ=255)

                                                                                   ttatattttttATTTTTTTTTTTATAAAAAA‑AAAAAAAAAAAAAAACACATT‑‑AAA‑AAT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttat                                        <  2:3181093/123‑1 (MQ=255)

                                                                                    cTATTTTTATATTTGTTTATTATCCAAAAA‑AAAAAAAAAAAAAAACCCTAAAAAAA‑TAA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                         <  2:2898816/128‑1 (MQ=255)

                                                                                     tttttttttatttttttaTATTAAAAAAT‑AAAAAAAAAAAAATAACCTT‑‑‑AAA‑AAT‑TAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                     <  2:3395194/126‑1 (MQ=255)

                                                                                       attttttATTTGTTTATATTCAAAAAT‑AAAAAAAAAA‑AATCACC‑‑TTAAAA‑ATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                   <  1:1196883/127‑1 (MQ=255)

                                                                                        ttttttATTTGTTTATAATAAAAAAA‑AAAAAAAAAAAAATACCCTTAAAAAA‑TAA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                     <  1:872502/128‑1 (MQ=255)

                                                                                         tttttatttttttattTTAAAAAAA‑AAAAAAAAAATAA‑ACCCATTTAAAA‑TTA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                   <  1:2403657/128‑1 (MQ=255)

                                                                                          ttttttttttttATTTATAAAAAA‑AAAAAAAAAAAAAAACCC‑AAAAAAA‑ATA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                  <  1:2587726/128‑1 (MQ=255)

                                                                                          ttttATTTTTTTATTATTAAAAAT‑AAAAAAAAAAAAATACCCTTAAAAAT‑TAA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                   <  1:1352663/128‑1 (MQ=255)

                                                                                          ttatATTTTTTTTTATTAAAAAAT‑AAAAAAAAAAAAATTCACATAAAAAA‑TTA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                   <  2:358156/125‑1 (MQ=255)

                                                                                           tttATTTTTTTATAATAAAAAAT‑AAAAAAAAAA‑AAT‑‑ACTATT‑AAA‑AAT‑TAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                              <  1:1818579/128‑1 (MQ=255)

                                                                                           tttATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAA‑AAT‑TAAAAAAAA‑AAAAAAAAAA‑‑‑TAAAAAAAAAATATATTAATTAAAATTACATATAATACCAAATTTTATTTTTAaaaaaat                            >  1:3175061/1‑127 (MQ=255)

                                                                                               ttttttTATTTTAAAAAAT‑AAAAAAAAAACAATATCC‑TTTAAAA‑TTA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                             <  1:2263775/128‑1 (MQ=255)

                                                                                               ttttttTAT‑TTAACAAAA‑AAAAAAAAAAAAAACACCATAAAAAT‑TAA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                             <  1:775029/128‑1 (MQ=255)

                                                                                               tttGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑TTAAAAA‑TTA‑AAAAAAAAA‑AAAAAAAAAAAAATAAAAACAAAAGATATTTATTAAAATAAAATATTATACCAAATTTTATTTTTAAAATaa                             >  1:3110085/1‑128 (MQ=255)

                                                                                                ttttttATTTTAACAAAA‑AAAAAAAAAAAAATACC‑‑ATTAAAA‑ATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                           <  1:3531241/125‑1 (MQ=255)

                                                                                                  tttttatatataaaaa‑aaaaaaaaaaaaaaaaCCAATAAAAA‑ATA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTAATTTTTAAAATAAGa                           <  1:3410849/116‑1 (MQ=255)

                                                                                                   tttaatatataaaaT‑AAAAAAAAAA‑AAAAACCATTAAAAA‑TTA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                         <  2:3330518/117‑1 (MQ=255)

                                                                                                   ttaatataaaaaaaa‑aaaaaaaaaaaaATACCC‑TTAAAAA‑ATA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                         <  1:3219155/117‑1 (MQ=255)

                                                                                                      ataataaaaaaa‑aaaaaaaaaaaaaaACCCA‑‑TAAAA‑ATTAAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                      <  1:3689607/120‑1 (MQ=255)

                                                                                                       tcataaaaaaT‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGAc                    <  2:3072440/121‑1 (MQ=255)

                                                                                                         ataaaaaaa‑aaaaaaaaaaaaATCACATT‑‑‑AAA‑AAT‑TAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                 <  1:1976284/123‑1 (MQ=255)

                                                                                                         aataaaaaa‑aaaaaaaaaaaaaaaaCCATAT‑AAA‑ATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                   <  1:2751028/123‑1 (MQ=255)

                                                                                                           aaaaaaT‑AAAAAAAAAACAATACCC‑‑TTAAAA‑AAT‑‑AAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataat               <  1:1136955/125‑1 (MQ=255)

                                                                                                             aaaaa‑aaaaaaaaaaCAAAACC‑‑ATTAAAA‑ATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata              <  1:519753/127‑1 (MQ=255)

                                                                                                                  ataaaaaaaaaTAATAACC‑‑TTAAAA‑ATT‑AAAAAAAAA‑AAAAAAAAAAAAATAAATACAAACTCTATTTCTTAAAATTCACTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata          <  1:344885/126‑1 (MQ=255)

                                                                                                                   aaaaaaaaaaCAATACCC‑‑TTAAAA‑AA‑‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc        <  2:3772230/128‑1 (MQ=255)

                                                                                                                    aaaaaaaaaaaaACCCC‑‑TTAAAA‑ATT‑TAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc        <  2:3356879/128‑1 (MQ=255)

                                                                                                                      aaaaaaaaaaaaCCCTTAAAAAT‑TAA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatatatt        <  1:685474/128‑2 (MQ=255)

                                                                                                                      aaaaaaaCAATCACC‑ATAAAAA‑TTA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCt       <  1:3155440/128‑1 (MQ=255)

                                                                                                                         aaaaCAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAA‑AAAAAAAAAAAA‑AAAAAACAAAAACTATTTATTAAAATTACCTTTTTTAAAACATTTTATTTTTAAAATAAAATATTCACATAatatataaataaaaa  >  1:3049103/1‑120 (MQ=255)

TAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAA‑AAT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATAT  >  CP016816/202353‑202603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`