Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4860T.57.3% 110.8 / inf 287intergenic (+264/‑411)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base T (20/76);  new base . (53/76);  total (101/186)
Fisher's exact test for biased strand distribution p-value = 1.50e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.50e-03

Only 100 of 314 total aligned reads displayed.

AGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑A‑AAT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAC  >  CP016816/202359‑202612
                                                                                                                                 |                                                                                                                                  
 gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCAtta                                                                                                                                   >  2:3031718/1‑127 (MQ=255)
  ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAATAAAAAAAAAAAAAATCCCCtta                                                                                                                                   >  1:2918947/1‑127 (MQ=255)
  ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCACttaa                                                                                                                                  >  2:3534162/1‑126 (MQ=255)
    attgtAAATAAAATAGTTAATTTTAATTAAAATAACATAAAATTAATAATTCTTATAATTTATAAACTCGTTATCTATTTTTT‑TATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCttaaaa                                                                                                                                <  1:102321/126‑5 (MQ=255)
    aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATACACttaaaa                                                                                                                                >  2:3628700/1‑124 (MQ=255)
     gtgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCttaaaaa                                                                                                                               >  2:3419984/1‑123 (MQ=255)
         aaaTAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCCttaaaaattaa                                                                                                                           >  2:3288570/1‑119 (MQ=255)
           ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACCtt‑‑‑aa‑a‑aat‑aaaaa                                                                                                                   >  1:3197339/1‑128 (MQ=255)
            taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTATTTTTT‑TATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCAAC‑‑ttaaa‑a‑att‑aaaaa                                                                                                                   >  1:3328819/1‑128 (MQ=255)
            taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTAATTTTT‑TATTTTTTTATCTTCAAAAAT‑AAAAAAAAAACAAACCCAATaaaaa‑a‑aaa‑aaa                                                                                                                     >  2:2403657/1‑128 (MQ=255)
             aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTAT‑TATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑Ttaaa‑a‑att‑aaaaaa                                                                                                                  >  1:3535144/1‑128 (MQ=255)
              ataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTAT‑TATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCAATAaaaaa‑a‑aaa‑aaaaa                                                                                                                   >  2:312084/1‑128 (MQ=255)
               taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAA‑A‑ATT‑aaaaaaaa                                                                                                                >  2:1994171/1‑128 (MQ=255)
                agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTATT‑TATTTGTTTATCATCACAAAT‑AAAAAAAAAACAAACACATAaaaaa‑a‑aaa‑aaaaaaa                                                                                                                 >  2:821697/1‑128 (MQ=255)
                    ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTT‑TATTTATTTATATTCACAAAA‑AAAAAAAAAAAAAACACAATaaaaa‑a‑aaa‑aaaaaaaaa‑aa                                                                                                            >  2:2629825/1‑128 (MQ=255)
                    ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAATAAAAAAAAAAACAATACCC‑‑TTAAA‑A‑ATT‑aaaaaaaaa‑aaa                                                                                                           >  2:2299585/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTAAAAA‑T‑TAT‑aaaaaaaaa‑aaaa                                                                                                          >  2:451919/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATT‑aaaaaaaaa‑aaaaaa                                                                                                        >  2:3193363/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACCTT‑‑‑AA‑A‑AAT‑aaaaaaaaa‑aaaaaaa                                                                                                       >  2:3750583/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCATGATCTATTTATT‑TATATATTAAAATTAACAAAT‑AAAAAAAAAACAAT‑‑ACAAATAAA‑A‑ATT‑aaaaaaaaa‑aaaaaa                                                                                                        >  1:3081405/1‑128 (MQ=255)
                       atgTTTATTAAAATAAAATAAAATTAATAATTTTTATAATTTTTTTACTTGTTTTTTATTTTTT‑TTTTTTTTTATTTTAAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑A‑ATT‑aaaaaaaaa‑aaaaaaa                                                                                                       <  2:2997617/126‑1 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAATAAAAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATT‑aaaaaaaaa‑aaaaaaa                                                                                                       >  1:3552557/1‑128 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATT‑aaaaaaaaa‑aaaaaaaa                                                                                                      >  2:3173428/1‑128 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAA‑A‑ATT‑aaaaaaaaa‑aaaaaaaa                                                                                                      >  1:2938570/1‑128 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAA‑A‑ATT‑aaaaaaaaa‑aaaaaaaa                                                                                                      >  2:3709833/1‑128 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATACC‑‑‑ATAAA‑A‑AAT‑aaaaaaaaa‑aaaaaaaaa                                                                                                     >  2:3879196/1‑128 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATAC‑‑‑AATAAA‑A‑AAT‑taaaaaaaa‑aaaaaaaaa                                                                                                     >  2:314675/1‑128 (MQ=255)
                         tttaattaaAATAAAATAAAATTAATAATTATTAAAATTTTTATACTCTTTTTATATTTTTT‑TATTTTTTTATATTCACAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑A‑ATT‑aaaaaaaaa‑aaaaaaaaa                                                                                                     <  1:3158934/127‑1 (MQ=255)
                         gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTTTTTATCTTCACAAAT‑AAAAAAAAAAAAAAAAC‑‑‑ATAAA‑A‑AAT‑aaaaaaaaa‑aaaaaaaaaa                                                                                                    >  2:220125/1‑128 (MQ=255)
                           taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAAACCC‑‑TTAAA‑A‑ATT‑aaaaaaaaa‑aaaaaaaaaaa                                                                                                   >  2:1052154/1‑128 (MQ=255)
                           taattaaAATACCATAAACTTAATAATTCTTATAATGAAGATCCTCGTGATATATTTTTT‑TATTTGTTTATCTTAACAAATAAAAAAAAAAACAAACCCC‑‑TTAAA‑A‑ATT‑aaaaaaaaa‑aaaaaaaata                                                                                                    >  2:3018495/1‑126 (MQ=255)
                            aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACATTAAAAA‑T‑aaa‑aaaaaaaaa‑aaaaaaaaaa                                                                                                    >  1:982653/1‑128 (MQ=255)
                            aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACACC‑‑TTAAA‑A‑ATT‑aaaaaaaaa‑aaaaaaaaaaaa                                                                                                  >  2:1545316/1‑128 (MQ=255)
                            aattaaAATACCATAAACTTAATAATTCTTATAATGAAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATATTAACAAAA‑AAAAAAAAAAAAATACC‑‑ATAAAA‑A‑AAT‑aaaaaaaaa‑aaaaaaaaaaaa                                                                                                  >  2:749731/1‑128 (MQ=255)
                             attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATT‑aaaaaaaaa‑aaaaaaaaaaaaa                                                                                                 >  2:2943664/1‑127 (MQ=255)
                             attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCC‑‑TTAAA‑A‑ATT‑aaaaaaaaa‑aaaaaaaaaaaaa                                                                                                 >  1:3059642/1‑127 (MQ=255)
                             attaaAATACCATAAACTTAAGAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCC‑‑TTAAA‑A‑TAT‑aaaaaaaaa‑aaaaaaaaaaaaa                                                                                                 >  2:891520/1‑127 (MQ=255)
                                aaatTAACATAAACATAATATTTATTATAAAGTTTTACTTCTTGATCTATTTTTT‑TATTTTTTTATCTTAACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑A‑ATT‑TAAAAAAAA‑AAAAAAAAAAAACTaaa                                                                                             <  1:2223241/128‑1 (MQ=255)
                                  aaTACCATAAACTTAATAATTCTTATAATTTAGATCCTCGTGATCTATTTTAT‑TATTTTTTTATCTTAACAAAT‑AAAAAAAAAAAAAAACAC‑‑TTAAA‑A‑ATT‑Aaaaaaaaa‑aaaaaaaaaaaaaaaaaa                                                                                            >  2:663052/1‑128 (MQ=255)
                                  aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATT‑Aaaaaaaaa‑aaaaaaaaaaaaaaaaaa                                                                                            >  2:3444236/1‑128 (MQ=255)
                                  aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATT‑Aaaaaaaaa‑aaaaaaaaaaaaaaaaaa                                                                                            >  2:1357550/1‑128 (MQ=255)
                                  aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTAACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATT‑Aaaaaaaaa‑aaaaaaaaaaaaaaaaaa                                                                                            >  1:3006111/1‑128 (MQ=255)
                                  aaTAACATTAAATAATTAATTATTTTAATTTAGTACCATGTTTTCTATTTTTT‑TATTTTTTTATCTTCACAAAA‑AAAAAAAAAAAAATCCCC‑‑ATAAA‑A‑ATT‑AAAAAAAAA‑AAAAAAAAAAAACTaaaa                                                                                            <  1:2482517/128‑1 (MQ=255)
                                          aaaaataaaaaTTATTATAATTTATATACACTTTATTTATTTTTT‑TATTTTTTTATATTCACAAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑AA‑A‑AAT‑‑AAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTa                                                                                  <  1:1276140/123‑1 (MQ=255)
                                           aaCTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATT‑AAAAAAAAA‑AAAAAAAAAAAACaaaaaaacaaataa                                                                                   >  1:2057100/1‑120 (MQ=255)
                                             attAATAATTTTTTAAATTTATATACTAGTGAATTATTTTTT‑TATTTTTATTAATTAAAAAAT‑AAAAAAAAAACAATACCC‑‑TTAAA‑A‑ATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTAt                                                                                 <  1:3602829/127‑1 (MQ=255)
                                                 ataataTTTATAATTTATATCCTCGTTATTTATTTTTT‑TATTTTTTTATTTTCAAAAAA‑AAAAAAAAAACAAACCCCTT‑‑‑AA‑A‑AAT‑TAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                            <  2:2071536/128‑1 (MQ=255)
                                                 aaaaatattttaATGTATATCCTCCTGATCTATTTTTT‑TATTTTTTTATCTTAACAAAA‑AAAAAAAAAACAAACCCC‑‑TTAAA‑A‑ATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCt                                                                             <  1:3837533/118‑1 (MQ=255)
                                                    aatCTTATAATGTAGATCCTCGTGATCTATTATTT‑TATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAA‑‑ACCAAAAAAA‑A‑ATT‑AAAAAAAAATAAAAAAAAAAAAAAAAAAACAAACTAAAtttataa                                                                           >  2:919304/3‑124 (MQ=255)
                                                      ttataaaaTTTATATACTAGTTATCTATTTTTT‑TAATTTTTTAACTTAAAAAAA‑AAAAAAAAAAAAAACCCC‑TTAAAA‑A‑TTA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaa                                                                         <  1:1071951/122‑1 (MQ=255)
                                                                    tctacttgtgatatttttt‑tattttttTATATTAAAAAAA‑AAAAAAAAAAAAATACCC‑‑TTAAA‑A‑AAT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                          <  1:892477/117‑1 (MQ=255)
                                                                    tacTCGTTATCTATTTTTT‑TATATGTTTATATTAACAAAT‑AAAAAAAAAACAATACCCTT‑‑‑AA‑A‑AAT‑‑TAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                        <  1:579526/126‑1 (MQ=255)
                                                                     aaatatttattATTTTTT‑TAATTTTTTAAAAAAAAAAAA‑AAAAAAAAAAAAATACC‑‑ATAAAA‑A‑ATA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                         <  1:1590884/118‑1 (MQ=255)
                                                                      tattgtttttttttttt‑ttttttttttttttAAAAAAA‑AAAAAAAAAAAAAAACCCTTT‑‑AA‑A‑AAT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                        <  2:3368480/117‑1 (MQ=255)
                                                                      ctaattttttATTTTAT‑TATTTTTTTAAAAT‑AAAAAA‑AAAAAAAAAAAAAAAACCATTAAAA‑A‑TTA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                         <  1:237870/119‑1 (MQ=255)
                                                                      catgtttaatttttttt‑tatttttttaTATTAAAAAAA‑AAAAAAAAAAAAAACCCC‑ATAAAA‑A‑TTA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                         <  1:3237816/117‑1 (MQ=255)
                                                                      caattttttaaTTTTTT‑TAATTTTTTAAAATAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAA‑A‑ATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                        <  1:3116654/118‑1 (MQ=255)
                                                                      aatgttatttATTTTTT‑TTTTTTTTTATTATAAAAAAT‑AAAAAAAAAA‑AAAAACCTTTAAAA‑A‑ATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                         <  1:3251716/119‑1 (MQ=255)
                                                                       ttgttttatttttttt‑ttttttttTATTTTAAAAAAA‑AAAAAAAAAAAAATAACATTAAAAA‑ATAAA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                          <  1:212113/118‑1 (MQ=255)
                                                                        tgttaTCTAATTTTT‑ATTTTGTTTATAATAAAAAAA‑AAAAAAAAAACAATCCCATT‑‑‑AA‑A‑AAT‑TAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                     <  1:3653084/124‑1 (MQ=255)
                                                                          ttatttatttttt‑tattttttTATATTTAAAAAT‑AAAAAAAAAA‑AATACCC‑TTAAAA‑A‑ATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                    <  1:2014184/123‑1 (MQ=255)
                                                                          ttataatattttt‑tttttttttATCTTAACAAAA‑AAAAAAAAAAAAAAAACC‑‑TTAAA‑A‑AAT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                    <  1:3399080/120‑1 (MQ=255)
                                                                          ttaTCTATTTTTTATATTT‑TTTATTTAAAAAAAA‑AAAAAAAAAAAAAACACC‑‑ATAAA‑A‑AAT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                    <  1:866064/126‑1 (MQ=255)
                                                                            tatatattttt‑tatttttttatAATTAAAAAA‑AAAAAAAAAAAAAAACCCCTTAAAA‑A‑TAA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                    <  1:3127413/122‑1 (MQ=255)
                                                                             aaaaTTTTTT‑TATTTGTATATATTAAAAAAA‑AAAAAAAAAACAAAACCCTTAAAAA‑T‑TAA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                   <  1:1526262/125‑1 (MQ=255)
                                                                               tttttttt‑tatttttttaTATTAAAAAAT‑AAAAAAAAAAAAATAACCTT‑‑‑AA‑A‑AAT‑TAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                              <  2:3395194/126‑1 (MQ=255)
                                                                               aatttttt‑tatttttttATATTAAAAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑A‑AAT‑TAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                              <  1:1372611/127‑1 (MQ=255)
                                                                                tattttt‑tttttttttATAATTAAAAAA‑AAAAAAAAAAAAAATACCTTT‑‑AA‑A‑AAT‑‑AAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                             <  1:3521207/126‑1 (MQ=255)
                                                                                 attttt‑tATTTGTTTATATTCAAAAAT‑AAAAAAAAAA‑AATCACC‑‑TTAAA‑A‑ATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                            <  1:1196883/127‑1 (MQ=255)
                                                                                  ttttt‑tttttttttATATAAAAAAAA‑AAAAAAAAAAAAAAACCC‑ATAAAA‑A‑TTA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                             <  2:3607751/128‑1 (MQ=255)
                                                                                  ttttt‑tATTTGTTTATATACAAAAAT‑AAAAAAAAAACAATCCCCTTT‑‑‑A‑A‑AAT‑TTAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                           <  1:337050/128‑1 (MQ=255)
                                                                                  ttatt‑tATTTTTTAATTTTAAAAAAA‑AAAAAAAAAAAAAAACC‑‑ATTAAA‑A‑ATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                            <  2:2459295/125‑1 (MQ=255)
                                                                                   tttt‑tattt‑tttatAATAACAAAA‑AAAAAAAAAAAAAAAACC‑ATAAAA‑A‑ATA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                           <  1:462045/128‑1 (MQ=255)
                                                                                   tttt‑tATTTTTTTATCTTAAAAAATAAAAAAAAAAACAATCCCCTT‑‑‑AA‑A‑AAT‑TAAAAAAAA‑AAAAGAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                           <  1:2299585/128‑1 (MQ=255)
                                                                                   tttt‑tATTTTTTTATAATAAAAAAT‑AAAAAAAAAAAAAAACCC‑‑ATAAA‑A‑AAT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                           <  1:3762105/128‑1 (MQ=255)
                                                                                    ttt‑tttttttttATTTATAAAAAA‑AAAAAAAAAAAAAAACCC‑AAAAAA‑A‑ATA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                           <  1:2587726/128‑1 (MQ=255)
                                                                                    ttt‑tATTTTTTTATCTTAAAAAAA‑AAAAAAAAAAAAAAACCC‑TAAAAA‑A‑TTA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                           <  1:2160335/128‑1 (MQ=255)
                                                                                     tt‑tATTTTTTTATAATAAAAAAT‑AAAAAAAAAA‑AAT‑‑ACTATT‑AA‑A‑AAT‑TAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                       <  1:1818579/128‑1 (MQ=255)
                                                                                     tt‑tATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑A‑AAT‑TAAAAAAAA‑AAAAAAAAAA‑‑‑TAAAAAAAAAATATATTAATTAAAATTACATATAATACCAAATTTTATTTTTAaaaaaat                                     >  1:3175061/1‑127 (MQ=255)
                                                                                      t‑tATTTTTTTATATTTAAAAAA‑AAAAAAAAAAAAAAACCC‑ATAAAA‑A‑ATA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaaa                                         <  1:1329813/128‑1 (MQ=255)
                                                                                          ttttttTAT‑TTAACAAAA‑AAAAAAAAAAAAAACACCATAAAAA‑T‑TAA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                      <  1:775029/128‑1 (MQ=255)
                                                                                           ttGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATT‑AAAAAAAAA‑AAAAAAAAAAAACAAAAAAAAAACATAATTTATAAAAGAACCCTTATAGAACACATTTTTTTTTTaaaaataat                                    >  2:1729875/1‑123 (MQ=255)
                                                                                             tttaatattaaaaaaa‑aaaaaaaaaaCAATACC‑‑ATTAAA‑A‑ATT‑TAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                                  <  1:190490/116‑1 (MQ=255)
                                                                                               ttATATTAAAAAAA‑AAAAAAAAAAAAATCAC‑‑ATTAAA‑A‑ATA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                <  2:1183391/128‑1 (MQ=255)
                                                                                                tatattaaaaaaa‑aaaaaaaaaaaaaaACCATTAAAAATT‑AAA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                                  <  2:3348086/119‑1 (MQ=255)
                                                                                                 ataataaaaaaa‑aaaaaaaaaaaaaaACCCA‑‑TAAA‑A‑ATTAAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                               <  1:3689607/120‑1 (MQ=255)
                                                                                                  ttaattaaaaa‑aaaaaaaaaaaaaaACCC‑‑TTAAA‑A‑AAT‑‑AAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                            <  1:1350260/121‑1 (MQ=255)
                                                                                                    ttaaaaaaa‑aaaaaaaaaaaaATAACC‑ATAAAA‑A‑AAT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                            <  2:3552557/123‑1 (MQ=255)
                                                                                                    ttCAAAAAT‑AAAAAAAAAAAAAAAACCCTT‑‑AA‑A‑AAT‑TAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                           <  2:1787711/128‑1 (MQ=255)
                                                                                                    taaaaaaaa‑aaaaaaaaaaaaaaACCC‑‑TTAAA‑A‑AAT‑‑AAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                          <  1:1989921/123‑1 (MQ=255)
                                                                                                    aataaaaaa‑aaaaaaaaaaaaaaaaCCATAT‑AA‑A‑ATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                            <  1:2751028/123‑1 (MQ=255)
                                                                                                      aaaaaaT‑AAAAAAAAAACAATACCC‑‑TTAAA‑A‑AAT‑‑AAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataat                        <  1:1136955/125‑1 (MQ=255)
                                                                                                        aaaaa‑aaaaaaaaaaCAAAACC‑‑ATTAAA‑A‑ATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata                       <  1:519753/127‑1 (MQ=255)
                                                                                                         aaaa‑aaaaaaaaaaaaAT‑ACCATTAAAA‑A‑TTA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata                       <  2:2885190/128‑1 (MQ=255)
                                                                                                           aT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑A‑ATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatat                    <  1:296415/128‑1 (MQ=255)
                                                                                                             ataaaaaaaaaTAATAACC‑‑TTAAA‑A‑ATT‑AAAAAAAAA‑AAAAAAAAAAAAATAAATACAAACTCTATTTCTTAAAATTCACTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata                   <  1:344885/126‑1 (MQ=255)
                                                                                                              aaaaaaaaaaCAATACCC‑‑TTAAA‑A‑AA‑‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc                 <  2:3772230/128‑1 (MQ=255)
                                                                                                                 aaaaaaaCAATAACCTTAAAAA‑T‑TAA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatatatt                 <  1:698782/128‑2 (MQ=255)
                                                                                                                                cttttAA‑A‑AAT‑TAAAAAAAA‑AAAAAAAAAAAACTAAATACAAACTCTATTTATTAAAATTTAATATTATACTACATTTTATTTTTAAAATAAGATATTGACATATTATATATATTAGATATatattat  <  2:1155986/127‑2 (MQ=255)
                                                                                                                                atttAAA‑A‑ATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc  <  1:2798115/127‑1 (MQ=255)
                                                                                                                                 |                                                                                                                                  
AGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTT‑TATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑A‑AAT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAC  >  CP016816/202359‑202612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑