Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4940AT56.1% 21.1 / 201.3 285intergenic (+272/‑403)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base A (31/94);  new base T (55/105);  total (86/199)
Fisher's exact test for biased strand distribution p-value = 9.15e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.19e-01

Only 100 of 360 total aligned reads displayed.

TAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGC  >  CP016816/202367‑202620
                                                                                                                                |                                                                                                                               
   ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCACCtt‑‑‑aaa‑aat‑aaaaa                                                                                                                          >  1:3197339/1‑128 (MQ=255)
   ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATATATTTTTTTATTTTTTTATCTTCACAAATAAAAAAAAAAAAATCACC‑‑Ttaaaa‑att‑aaaa                                                                                                                           >  2:3141242/1‑128 (MQ=255)
    taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATACCAtt‑‑‑aaa‑aat‑aaaaaa                                                                                                                         >  2:3627387/1‑128 (MQ=255)
    taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTAATTTTTTATTTTTTTATCTTCAAAAATAAAAAAAAAACAAACCCAATaaaaaa‑aaa‑aaa                                                                                                                            >  2:2403657/1‑128 (MQ=255)
    taataGAGTTAAGGTTAATTAAAATACAATAAAATTAATAATTCTTATAATTTAGATCCTCGTGATCTATATAATTATTATTTTATCTTCACAAAT‑AAAAAAAAACAATCACC‑‑‑TAAAA‑AAT‑taaaaaa                                                                                                                        >  1:1203542/1‑128 (MQ=255)
     aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAAACAC‑ATtaaaa‑aat‑aaaaa                                                                                                                          >  1:3335139/1‑128 (MQ=255)
     aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTAGTTTATATTCACAAATAAAAAAAAAACAAAACCC‑‑Ttaaaa‑att‑aaaaaa                                                                                                                         >  1:1158472/1‑128 (MQ=255)
       taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTC‑TAATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCAC‑‑TTAAAA‑ATT‑aaaaaaaaa                                                                                                                      >  2:1062340/1‑128 (MQ=255)
       taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTATTATTTGTTTATCTACACAAATAAAAAAAAAAAAATACC‑‑AATAAAA‑AAT‑aaaaaaaa                                                                                                                       >  2:935117/1‑128 (MQ=255)
        agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCTTCGTGATCTAATATTATATTTGTATATCTTCACAAATAAAAAAAAAACAAACCAC‑‑‑AAAAA‑AAT‑aaaaaaaaaa                                                                                                                     >  2:2223241/1‑128 (MQ=255)
           tttAAGGTTAATTAAAAAAACAAAAAATTAAAAAATCTTAAAATTTATATCCTCGTGATCTATTTTTTTTTTTGTTTATATTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaa                                                                                                                   <  2:339258/127‑1 (MQ=255)
            ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTACACAAATAAAAAAAAAAAAATCCAC‑‑‑TAAAA‑AAT‑taaaaaaaaaaaaa                                                                                                                 >  1:3809098/1‑128 (MQ=255)
            ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTATTTATATTCACAAAAAAAAAAAAAAAAAACACAATaaaaaa‑aaa‑aaaaaaaaaaa                                                                                                                    >  2:2629825/1‑128 (MQ=255)
            ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGCTATATTTTTTTATTATTTTATATTAAGAAATAAAAATAAAACAATAC‑‑‑AATAAAa‑aat‑aaaaaaaataaaaa                                                                                                                 >  2:2110148/1‑128 (MQ=255)
             tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCC‑‑ATTAAAA‑ATT‑aaaaaaaaaaaaaa                                                                                                                 >  2:3439822/1‑128 (MQ=255)
             tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCC‑‑AAAAAAA‑AAT‑aaaaaaaaaaaaaa                                                                                                                 >  2:1547589/1‑128 (MQ=255)
              aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAACAATCAAC‑‑ATAAAA‑ATT‑aaaaaaaaaaaaaaaa                                                                                                               >  2:2014184/1‑128 (MQ=255)
              aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCC‑‑ATTAAAA‑ATT‑aaaaaaaaaaaaaaa                                                                                                                >  2:3022784/1‑128 (MQ=255)
              aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCACCTT‑‑‑AAA‑AAT‑aaaaaaaaaaaaaaaa                                                                                                               >  2:3750583/1‑128 (MQ=255)
              aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCC‑‑‑AAAAAA‑AAT‑aaaaaaaaaaaaaaaa                                                                                                               >  1:3123633/1‑128 (MQ=255)
              aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTAGTTTATCTTCACAAAAAAAAAAAAAACAAACCC‑‑ATTAAAA‑ATT‑aaaaaaaaaaaaaaa                                                                                                                >  2:2446370/1‑128 (MQ=255)
              aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCATGATCTATTTATTTATATATTAAAATTAACAAATAAAAAAAAAACAAT‑‑ACAAATAAAA‑ATT‑aaaaaaaaaaaaaaa                                                                                                                >  1:3081405/1‑128 (MQ=255)
               atgTTTATTAAAATAAAATAAAATTAATAATTTTTATAATTTTTTTACTTGTTTTTTATTTTTTTTTTTTTTTATTTTAAAAAATAAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaaa                                                                                                               <  2:2997617/126‑1 (MQ=255)
               aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTAATTTTTTATTTTATTATCTACACAAATAAAAAAAAAAAAATAACAATAaaaaa‑aaa‑aaaaaaaaaaaaaa                                                                                                                 >  2:100192/1‑128 (MQ=255)
               aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAAACCC‑‑‑ATAAAA‑AAT‑aaaaaaaaaaaaaaaaa                                                                                                              >  2:1952218/1‑128 (MQ=255)
                ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaaaa                                                                                                              >  2:3179824/1‑128 (MQ=255)
                ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCACC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaaaa                                                                                                              >  2:3709833/1‑128 (MQ=255)
                ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATACC‑‑‑ATAAAA‑AAT‑aaaaaaaaaaaaaaaaaa                                                                                                             >  2:3879196/1‑128 (MQ=255)
                ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAAACAC‑‑ATAAAA‑AAT‑aaaaaaaaaaaaaaaaa                                                                                                              >  1:2942432/1‑128 (MQ=255)
                ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATATTTATATTTGTTTATCTTCACAAATAAAAAAAAAACAATACACTTaaaaaa‑aaa‑aaaaaaaaaaaaaaa                                                                                                                >  1:182514/1‑128 (MQ=255)
                 tttaattaaAATAAAATAAAATTAATAATTATTAAAATTTTTATACTCTTTTTATATTTTTTTATTTTTTTATATTCACAAAAAAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaaaaa                                                                                                             <  1:3158934/127‑1 (MQ=255)
                 gTTAATTAAAATAACATAAAATTAAAAATTAATAAAATTTTGATACTTTTTTTATATTTTTTTAATTTTTTATATTAACAAAAAAAAAAAAAAAAAACCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaaaaa                                                                                                             <  1:1287151/128‑1 (MQ=255)
                  ttaattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATATTTTTATTTTTTTATCTTCACAAATAAAAAAAAAACAAT‑‑AAAATTAAAA‑ATT‑aaaaaaaaaaaaaaaaaaa                                                                                                            >  1:1534056/1‑128 (MQ=255)
                    aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAATCCC‑‑ATTAAAA‑ATT‑aaaaaaaaaaaaaaaaaaaaa                                                                                                          >  1:3545705/1‑128 (MQ=255)
                    aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAATCACC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaaaaaaaa                                                                                                          >  1:3508557/1‑128 (MQ=255)
                    aattaaAATACCATAAACTTAATAATTCTTATAATGAAGATCCTCGTGATCTATTTTTTTATTTGTTTATATTAACAAAAAAAAAAAAAAAAATACC‑‑ATAAAAA‑AAT‑aaaaaaaaaaaaaaaaaaaaa                                                                                                          >  2:749731/1‑128 (MQ=255)
                     attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAATAAAAAAAAAACAAACAC‑‑AAAAAAA‑ATT‑aaaaaaaaaaaaaaaaaaaaaa                                                                                                         >  2:1761560/1‑127 (MQ=255)
                     attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAAAACC‑‑ATTAAAA‑ATT‑aaaaaaaaaaaaaaaaaaaaaa                                                                                                         >  2:1180227/1‑127 (MQ=255)
                     attaaAATACCATAAACTTAAGAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCCC‑‑TTAAAA‑TAT‑aaaaaaaaaaaaaaaaaaaaaa                                                                                                         >  2:891520/1‑127 (MQ=255)
                      ttaaAATAAGAAAAATTTAAAATTTAATATAATGTATTATCACGTGAAATATTTTTTTTTTTGTTTTTTTTCACAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAAACTa                                                                                                       <  1:828720/128‑1 (MQ=255)
                         aaataaaaaaaaaTTAAAAATTCTTATAATTTACTTCCTAGTTATCTAATTTTTTAATTTTTTATATTAAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTaaa                                                                                                     <  1:3375530/119‑1 (MQ=255)
                         aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCACC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                     >  1:2914385/1‑123 (MQ=255)
                          aaTACCATAAACTTAATAATTCTTATAATTTAGATCCTCGTGATCTATTTTATTATTTTTTTATCTTAACAAATAAAAAAAAAAAAAAACAC‑‑TTAAAA‑ATT‑Aaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                    >  2:663052/1‑128 (MQ=255)
                                   aaattAAAAATTATTATAATTTATATACTATTTAAATATTTTTTTATTTTTTTATATTAAAAAAAAAAAAAAAAAAAAAACC‑‑ATTAAAA‑AAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                          <  1:109832/125‑1 (MQ=255)
                                   aaCTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACaaaaaaacaaataa                                                                                           >  1:2057100/1‑120 (MQ=255)
                                      ttAATAATTAATATAATATATATCAATGTCAAATATTTTTTTAATTTTTTAATATAAAAAAAAAAAAAAAAAAAAACCCC‑‑ATAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAtt                                                                                        <  1:1941158/128‑1 (MQ=255)
                                                         aGATCCTAGTTTTATATTTTTTTTTTTTTTTTTATTAAAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAAA‑ATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                                     <  1:3619315/128‑1 (MQ=255)
                                                            tcaagtttttatatttttttattttttTATATTAAAAAATAAAAAAAAAA‑AAAAACCTTTAAAAA‑TTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                                   <  1:879613/117‑1 (MQ=255)
                                                            actattttaaatatttttttattttttTAAATAAAAAAAAAAAAAAAAAAAAAACCCC‑‑TAAAAA‑ATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                                  <  1:731522/117‑1 (MQ=255)
                                                              catgtttaatttttttttatttttttaTATTAAAAAAAAAAAAAAAAAAAAACCCC‑ATAAAAA‑TTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                                 <  1:3237816/117‑1 (MQ=255)
                                                              aatgttatttATTTTTTTTTTTTTTTATTATAAAAAATAAAAAAAAAA‑AAAAACCTTTAAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                                 <  1:3251716/119‑1 (MQ=255)
                                                               ttgttttattttttttttttttttTATTTTAAAAAAAAAAAAAAAAAAAATAACATTAAAAAATAAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                                  <  1:212113/118‑1 (MQ=255)
                                                                 tttattaaTTTTTATAATTTTTTATATTAACAAAATAAAAAAAAAAAATAACCATT‑‑AAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                             <  1:1347108/121‑1 (MQ=255)
                                                                 gttttatatttttttattttttAAAATTAAAAAATAAAAAAAAAAAAAACCCATTAAAAAA‑TAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcaca                                                               <  1:2373765/122‑1 (MQ=255)
                                                                  ttaTCTATTTTTTTAATTGTTTAATATCAAAAAAAAAAAAAAAAAAAACCCC‑‑ATAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                            <  1:1703326/126‑1 (MQ=255)
                                                                   tttatatttttttattttttTATTTTAAAAAAAAAAAAAAAAAAAAT‑CCCATTAAAAA‑TTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                            <  1:1052154/124‑1 (MQ=255)
                                                                   tatatatttttttattttttTATCATTAAAAATAAAAAAAAAACAATTCCC‑‑TTAAAA‑TTT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                           <  1:3442654/124‑1 (MQ=255)
                                                                      atatttttttattttttTAAAATAACAAAAAAAAAAAAAAAAAACCCC‑‑TTAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatt                                                        <  1:276474/127‑1 (MQ=255)
                                                                      aattttttttatttttttaTAATAAAAAATAAAAAAAAAAAAAAAAACCCTAAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                          <  1:200967/125‑1 (MQ=255)
                                                                        tttttttttttttttTAATTATAAAAAAAAAAAAAAAAAAAAACCCATT‑‑AAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                      <  1:538096/127‑1 (MQ=255)
                                                                        aTTTTTTTATTTGTTTAAATTAAAAAAAAAAAAAAAAAAAATACCC‑‑TTAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                      <  1:3688227/128‑1 (MQ=255)
                                                                         ttttttttttttttTATATTTAAAAATAAAAAAAAAAAAAACCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                     <  2:2930303/128‑1 (MQ=255)
                                                                         tttttttAATTTTTTATCTTAAAAAAAAAAAAAAAAAAAATACCATT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                    <  2:854086/128‑1 (MQ=255)
                                                                         tttttttAATTTTTTATAATAAAAAAAAAAAAAAAAAAAAAAACC‑‑ATAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                     <  1:2682287/128‑1 (MQ=255)
                                                                           tttttattt‑tttatAATAACAAAAAAAAAAAAAAAAAAAACC‑ATAAAAA‑ATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                                   <  1:462045/128‑1 (MQ=255)
                                                                            ttttATTTTTTTATTATTAAAAATAAAAAAAAAAAAATACCCTTAAAAAT‑TAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                    <  1:1352663/128‑1 (MQ=255)
                                                                            ttatATTTTTTTTTATTAAAAAATAAAAAAAAAAAAATTCACATAAAAAA‑TTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                    <  2:358156/125‑1 (MQ=255)
                                                                              ttATTTTTTTATCTTAACAAAAAAAAAAAAAAAAATACCC‑‑TTAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAAt                                                <  1:3534162/128‑1 (MQ=255)
                                                                                  ttttttATTTTAAAAAAAAAAAAAAAAAAAATACCCTAAAAAAT‑TAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                              <  1:2154154/125‑1 (MQ=255)
                                                                                     tttaatatataaaaTAAAAAAAAAA‑AAAAACCATTAAAAA‑TTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                                          <  2:3330518/117‑1 (MQ=255)
                                                                                     tttATCTTCACAAATAAAAAAAAAACAATCCCCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAAA‑‑AAAACCAAAATATATTTATTAAAATTACATATTAAACCAAATATAATTTTTAAAAAAAGATAttta                                      >  2:3150396/1‑126 (MQ=255)
                                                                                         tcataaaaaaTAAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGAc                                     <  2:3072440/121‑1 (MQ=255)
                                                                                         tataaaaaataaaaaaaaaaaaaATCCCC‑‑‑TAAAA‑AAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                    <  2:3793067/117‑1 (MQ=255)
                                                                                          cTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAAATAAAAACAAAATGTTTTTATTAAAATTCAATTTTTAAAAAAATTTTTTTTTTATAATAAgtttttcact                                    >  1:3060881/1‑119 (MQ=255)
                                                                                          attaaaaaaaaaaaaaaaaaaaaaACCCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                                   <  2:3352094/122‑1 (MQ=255)
                                                                                           ttaaaaaaaaaaaaaaaaaaaATAACC‑ATAAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                    <  2:3552557/123‑1 (MQ=255)
                                                                                           taaaaaaaaaaaaaaaaaaaaaaACCC‑‑TTAAAA‑AAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                                  <  1:1989921/123‑1 (MQ=255)
                                                                                              aaaaaaaaaaaaaaaaaaATACCC‑‑TAAAAA‑ATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataat                                <  1:2455489/126‑1 (MQ=255)
                                                                                                aaaaaaaaaaaaaaaaAT‑ACCATTAAAAA‑TTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata                               <  2:2885190/128‑1 (MQ=255)
                                                                                                  aTAAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatat                            <  1:296415/128‑1 (MQ=255)
                                                                                                    aaaaaaaaaaCAATAAAATTAAAAAA‑TAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatat                            <  1:636537/128‑1 (MQ=255)
                                                                                                              aaaaataaacttaaaa‑attaaaaaAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTACCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatat                   <  1:963840/118‑1 (MQ=255)
                                                                                                               aaaataacattaaaa‑attaaaaaAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatata                  <  1:496986/119‑1 (MQ=255)
                                                                                                               aaaaaacacataaaa‑att‑aaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat                 <  2:350725/118‑1 (MQ=255)
                                                                                                                aaatacaaataaaa‑attaaaaaaAAAAAAAAAAAAAAAACTAAAAACAAACTATATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat                 <  1:2623232/119‑1 (MQ=255)
                                                                                                                 aatcaccttAAAA‑AAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAAtatatata              <  2:446054/121‑1 (MQ=255)
                                                                                                                 aataccattaaaa‑att‑aaaaaAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAATATAAGATATTGACATAATATATATCTAatatatat               <  1:3589684/121‑1 (MQ=255)
                                                                                                                 aaataacattaaa‑aat‑ttaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat               <  1:3265749/118‑1 (MQ=255)
                                                                                                                    ccccttaaaa‑att‑aaaaaAAAAAAAAAAAAAAAA‑‑AAAAACAAACGCTATTAATTAAAATTCCCATTTATACCCAATTTTATTTTTAAATAAAGATATTGACATATAATATATCTAAAATATataataa          >  1:3735695/5‑127 (MQ=255)
                                                                                                                    ccaattaaaa‑attaaaaaAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCACTATTATACCACATTTTATTTTTAAAATAAGATATTGACATTATATATATTAGatatatatta             <  1:2271336/124‑3 (MQ=255)
                                                                                                                      aattAAAA‑ATT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc          <  1:3179824/126‑1 (MQ=255)
                                                                                                                       cataaaa‑attaaaaaaAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc          <  2:3211380/126‑1 (MQ=255)
                                                                                                                       attaaaa‑attaaaaaAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc          <  2:1496293/127‑1 (MQ=255)
                                                                                                                       attaaaa‑attaaaaaAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc          <  1:1516006/127‑1 (MQ=255)
                                                                                                                        ttaaaa‑att‑aaaaaAAAAAAAAAAAAAAATCTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACta        <  2:1343471/128‑1 (MQ=255)
                                                                                                                        ttaaaa‑att‑aaaaaAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACta        <  2:3274753/128‑1 (MQ=255)
                                                                                                                        ttAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACta        <  1:2540193/128‑1 (MQ=255)
                                                                                                                        atttaa‑aat‑taaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACta        <  1:2211118/124‑1 (MQ=255)
                                                                                                                            aa‑att‑aaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATAtt    <  1:2888942/128‑1 (MQ=255)
                                                                                                                               tat‑aaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGc  <  1:3022416/127‑1 (MQ=255)
                                                                                                                                |                                                                                                                               
TAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGC  >  CP016816/202367‑202620

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑