Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP01681676,8780GT34.0% 4930.4 / inf 2708intergenic (‑127/+58)JCVSYN2_00300/JCVSYN2_00305UTP‑‑glucose‑1‑phosphate uridylyltransferase/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (1437/274);  new base T (24/859);  total (1465/1243)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 2756 total aligned reads displayed.

TAATATCTCCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑CTTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAAT  >  CP016816/76751‑77009
                                                                                                                               |                                                                                                                                            
taataTCTCCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATTACTGTACAACCCAAATTACCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAg                                                                                                                                              >  1:3878163/1‑128 (MQ=255)
   tatCTCCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACACAAATTCCCCTTTAAATTCAAATAACAATATATAAAGATAAATTATTTAAAGaaa                                                                                                                                           >  2:4644761/1‑128 (MQ=255)
     tctcCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAAAACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTAAAAGaaaaa                                                                                                                                         >  2:1794117/1‑128 (MQ=255)
         cTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACACAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAtt                                                                                                                                    >  2:1649648/1‑128 (MQ=255)
          ttAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTa                                                                                                                                  >  2:5014384/1‑128 (MQ=255)
           tAAAAATTTATATATATTAGTGAACTTAATGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTAAAATAACATTATATAAATATAAATTTTTTAAAGAAAAATATTAc                                                                                                                                 <  1:144098/128‑1 (MQ=255)
                aTTTATATATATATTTGAACTTAAGGATGTATAATAAAAATTAAAAATAACTGTACAACCCAAATTCCCCTTTAAATTAAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑Ctt                                                                                                                      <  1:6179635/128‑1 (MQ=255)
                 tttATATTTTTTATTGAATTTTATGATGTTTAATAAAAATTAATAATAACTTTAAAACACAAATTACCCTTTAAATTTAAATAAAATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑Cttt                                                                                                                     <  1:5656248/128‑1 (MQ=255)
                 tttATATATATTAGTGAACTTAAGGATGTTTAAAACAAATTAAAAATAACTTTACAACCCAAATTTCCCTTTAAATTCAAATAACATTTTATAAAGAAAAATTTTTTAAACAAAAATATTAAAA‑‑‑‑Cttt                                                                                                                     <  2:4848185/128‑1 (MQ=255)
                   tatatataTTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑Gttttt                                                                                                                  >  1:5428812/1‑128 (MQ=255)
                    atatatatTACTCAAATTAAGTATCTATAAAACAAATTAAAAATAACTGTACAACCCAAATTCCCCATTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑Ctttttt                                                                                                                 <  2:4353243/128‑1 (MQ=255)
                     aatatatTACTGAACTTAATGATTTATAATAAAAAAAAATAATAACTGTACAACCCAAATTCCCCTTTAAATTAAAATAACATTATATAAAGTTAAAATTTTTAAATAAAAATAATTCAA‑‑‑‑Catttttt                                                                                                                <  2:5495287/127‑1 (MQ=255)
                       tatatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑Cttttttttt                                                                                                              >  1:1000171/1‑128 (MQ=255)
                       tatatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATAACAA‑‑‑‑Cttttttttt                                                                                                              >  1:6549984/1‑128 (MQ=255)
                        atatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑Ctttttttttt                                                                                                             >  2:3595506/1‑128 (MQ=255)
                         tatttttGAACTTAATGATGTATAAAAAAAATTAAAAATAACTTTAAAACCCAAATTCCCCTTTAAATTAAAATAAAATTATATAAATATAAATTTTTTAAATAAAAATATTACAA‑‑‑‑Attttttttttt                                                                                                            <  1:504401/122‑1 (MQ=255)
                         tatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑Cttttttttttt                                                                                                            >  2:3452709/1‑128 (MQ=255)
                          atTAGTGCACATAAGGATTTAAAAAAAAAATTAAAAAAAACTTTACAACCCAAATTCCCCTTTAAAATAAAAAAAAAATATATAAACATAAATTTTTTAAACAAAAAAATTACAA‑‑‑‑Ctttttttttttt                                                                                                           <  2:6275409/128‑1 (MQ=255)
                          atTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATACCCCTTTAAATTCAAATAACATTATAGAAAGATAAATTTTTTAAAGAAAAATAATACAA‑‑‑‑Cttttttttattt                                                                                                           >  2:6382240/1‑128 (MQ=255)
                           ttAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑Cttttttttttttt                                                                                                          >  2:6710931/1‑128 (MQ=255)
                                gAACTTAATGATGTATAATAAAAATTAAAAATAACTGTACAACCCAAATTCCCCTTTAAATTAAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑Cttttttttttttggaact                                                                                                     <  2:2980213/128‑7 (MQ=255)
                                  aCTTAACGTTTTAAAATAAAAATTAAAAAAAAATTTAAAAACCAAATTACCCTTTAAATTCAAAAAACATTTAATAAATATAAATTTTTTAAATAAAAATATTACAA‑‑‑‑CTTTTTTTTTTTTTTTGGAAc                                                                                                  <  2:2515004/128‑1 (MQ=255)
                                   attattgATGTAAAATAAAAATTAATAAAAACTTTACAAACCAAATTACCCTTTAAATTAAAAAAAAAATAAATAAATATAAATTTTTTAAATAAAAATATTTAAA‑‑‑‑ATTTTTTTTTTTTTTTTGGAAc                                                                                                  <  1:2311903/122‑1 (MQ=255)
                                    ttAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑Cttttttttttttttttttttta                                                                                                 >  1:2125051/1‑122 (MQ=255)
                                     tAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑Cttatttttttttttttataaata                                                                                                >  2:85902/1‑121 (MQ=255)
                                     tAAAGATTTAAAAAAAAAAATAATAAAAAATTTAAAACACAAATTCCCCTTTAAAATTAAAAAAAAATATAAAAATATAAATTTTTTAAATAAAAAAATTTAAA‑‑‑‑ATTTTTTTTTTTTTTTTGGAACTa                                                                                                <  1:3120537/128‑1 (MQ=255)
                                       aGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑Ctttttttttttttttgtaaaaaaaa                                                                                              >  1:4239056/1‑118 (MQ=255)
                                       aGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑CTTTTTTTATTTTTTTTGTAAATAAc                                                                                              >  2:4469806/1‑128 (MQ=255)
                                        ggATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑CTTTTTTTTTTTTTTTTgtagaaaaat                                                                                             >  1:7001082/1‑119 (MQ=255)
                                          tagTAAAATAAAAATTAATAATAAATGAACAACCCAAATTCCCCTTTAAAATGAAATAAAATTTTAAAAATATAAAATTTTTAAACAAAAATATTACAA‑‑‑‑CTTTTTTTTTTTTTTTTGGAACTAACata                                                                                           <  2:1446499/126‑1 (MQ=255)
                                           tttataAAACAAATTAAAAATAACTTTAAAACCCAAATTCCCCTTTAAATTAAAAAAAAATTATATAAACATAAATTTTTTAAATAAAAATATTAAAA‑‑‑‑CTTTTTTTTTTTTTTTTTGGAACTAACata                                                                                           <  1:5883159/126‑1 (MQ=255)
                                           tGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑C‑‑TTTTTTTTTTTTTTGGAAATAACATaaaa                                                                                        >  2:2710443/1‑128 (MQ=255)
                                           ataaaaaaaaaaaTTAAAAAAAACTTTACAAACAAAAATCCCCTTTAAAATAAAATAAAATTATATAAATAAAAATTTTTTAAAAAAAAAAATTAAAAAT‑‑TTTTTTTTTTTTTTTTTGGAACTAACat                                                                                            <  2:1327917/118‑1 (MQ=255)
                                            ttataATACAAATTAATAATAACTGTACAAACCAAATTCCCCTTTAAATTCAAAAAAAATTATAAAAATATAAATTTTTTAAACAAAAATAATACAA‑‑‑‑CTTTTTTTTTTTTTTTTGGAACTAACAtata                                                                                         <  2:6011918/127‑1 (MQ=255)
                                             ttaaaaaaaaaTTAAATAAAAATTTATAAACCAATATCCCATTTAAAATTAAATAAAATTATTTAAATTTAAATTTTTTAAATAAAAATTTTAAAA‑‑‑‑ATTTTTTTTTTTTTTTTGGAACTAACATATaa                                                                                        <  1:4901031/120‑1 (MQ=255)
                                             tataATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑CTTTTTTTTTTTTTTTTGGaaaaaaaatttaa                                                                                        >  1:7136865/1‑117 (MQ=255)
                                             tataATACAAATTAATAATAACTGTACAACCCAAATTCACCTTTAAAATCAAATAACATTATATAAAGATAAATATTAAAAAGAAAAATATTACAA‑‑‑‑ATTTTTTTTTTTATTTTTaaaataaaaaataa                                                                                        >  2:2844158/1‑128 (MQ=255)
                                               taataCAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑CTTTTTTTTTTTTTTTTTTAAAAAAAATATAAtt                                                                                      >  1:2973377/1‑128 (MQ=255)
                                               taataCAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑CTTTTTTTTTTTTTTTGTAAAAAACATATAAttt                                                                                     >  1:1951440/1‑128 (MQ=255)
                                                 ataaataTTAATAAATAATGTTCAAACCAAATTACCATTTTAATTTAAATAAAATTATATAAATTTAAATTTTTTAAATAAAAATATTAAAA‑‑‑‑CTTTTTTTTTTTTTTTGGAACTAACATATAATTTTa                                                                                   <  1:179540/122‑1 (MQ=255)
                                                    cAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑CTTTATTTTTTTTTTTTTTTAAATAAAAAATAAtttaaa                                                                                  >  2:5600878/1‑125 (MQ=255)
                                                    cAAATTAATAAAAAAGGTACAACCCAAATTCCCCTTATAATTTAAATAACATTTTATAAACATAAATTTTTTAAATAAAAATATTACAA‑‑‑‑CTTTTTTTTTTTTTTTTGGAACTAACATATAATTTTAcc                                                                                 <  1:3247943/128‑1 (MQ=255)
                                                    aaaaTTAATAATTACTGTACAACCCAAATTCACCTTTAAATTCAAAAAAATATATATAAACATAAATTTTTTAAAGAAAAAAATTAAAA‑‑‑‑ATTTTTTTTTTTTTTTTGGAACTAACATATAATTTTAcc                                                                                 <  1:2577438/127‑1 (MQ=255)
                                                      aaataaaaataaCATTAAAACCCAAAATACCCCTTAAAATTAAAAAAAATTATAAAAATATTAAATTTTTAAAAAAAAAAAATAAAA‑‑‑‑ATTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCaa                                                                               <  2:6623893/125‑1 (MQ=255)
                                                      aaTTAAAAAATAATGTACAAACAAAATTACCATTTAAAATAATATAAAATTTTATAAATTTAAATTTTTTAAATAAAAATATTTAAA‑‑‑‑ATTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCaa                                                                               <  2:1159600/128‑1 (MQ=255)
                                                       aataataataaATTTAAAAACAAAATTTCCATTTAAATTAAAATTACATTATATAAATATAAAATTTTTAAAAAAAAATATTAAAAA‑‑‑‑TTTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCaa                                                                               <  2:5360725/126‑1 (MQ=255)
                                                       aTTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑CTTTTTTTTTTTTTTTTTAAAAAAAAATATAATTTTACAAat                                                                              >  2:4077534/1‑128 (MQ=255)
                                                          aataataaCTGTAAAAACCAAATTCCCCTTTAAATTCAAATAAAATTATATAAATATAAATTTTTTAAATAAAAATAATAAAA‑‑‑‑CTTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAattat                                                                           <  2:7238156/128‑1 (MQ=255)
                                                             aataaATGTAAAAAATAAATTACTCTTTAAATTTAAATAAAATTATTAAAATTTAAATTTTTTAAATAAAAATATTAAAAT‑‑‑TTTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAAttatta                                                                         <  1:155073/128‑1 (MQ=255)
                                                               taaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑CTTTTTTTTTTTTTTTTGTAACTAAAATATAATTTTACAAATTATTaaaa                                                                      >  1:1655226/1‑128 (MQ=255)
                                                               taaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑CTTTTTTTTTTTTTTTTGTAACTAAAATATAATTTTAACAATTATTAGaa                                                                      >  1:4360687/1‑128 (MQ=255)
                                                                aaatGTAAAACCAAAATTCCCCTTTAAAATAAAATAAAATAATATAAAAAAAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑CTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatt                                                                    <  1:6788617/125‑1 (MQ=255)
                                                                 aCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑CTTTTTTTTTTTTTTTTTTTAAATAACATAAAATTTTAAAAATTATTATaat                                                                     >  2:5233688/1‑128 (MQ=255)
                                                                     tccAACCCAAATTCCCCTTTAAATTCAAAAAACATTATATAAATTTAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑CTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttcaat                                                               <  1:474709/126‑1 (MQ=255)
                                                                       aaaaaaaaaTTACCATTTAAATTTAAATAAAATTTTTAAAATTTAAATTTTTTATAAAAAAATTTTAAAA‑‑‑‑ATTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttcaatt                                                              <  1:2414587/122‑1 (MQ=255)
                                                                         aCCCAAAATAACCATTAAATTTAAAAAACATAATATAAATATAAATTTTTTAAATAAAAAAATTAAAA‑‑‑‑ATTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttcaatttc                                                            <  1:6431246/128‑1 (MQ=255)
                                                                          aaataattatacTTTATATTTAAAATAAATTATATAAATTTAAATTTTTTAAATTAAAAAATTAAAAA‑‑‑‑TTTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttcaatttc                                                            <  1:5280764/117‑1 (MQ=255)
                                                                           ccAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑CTTTTTTTTTTTTTTTTTTAAATAAAAAATAATTTTAACAATTATTAAaattaaaatttaaa                                                          >  2:3285994/1‑125 (MQ=255)
                                                                            cAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑CTTTTTTTTTTTTTTTTTTGAAATAAAATAAAATTTTAACAATTATTAAaatttaaattaaac                                                          >  1:6266128/1‑124 (MQ=255)
                                                                              aattaccaataaaaTTAAAAAAAAATTATATAAATTTAAATTTTTTAAATAAAAATTTTAAAA‑‑‑‑CTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGAt                                                      <  1:3990380/117‑1 (MQ=255)
                                                                               aTTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑CTTTTTTTTTTTTTTTTTGAAATAACATATAATTTTACCAATTATTAGAATTTAAATTTcacatct                                                      >  1:1286962/1‑125 (MQ=255)
                                                                               aTTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑CTTTTTTTTTTTTTTTGGAACTAAAATATAATTTTACCAATTATTATAATTTCAATTTAACAAAtt                                                     >  2:6135216/1‑127 (MQ=255)
                                                                                 tCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑CTTTTTTTTTTTTTTTTTTTAAAAAAAAAATAATTTTACCAATTATTATaatttaaatttacaaataa                                                     >  1:2728861/1‑120 (MQ=255)
                                                                                 tCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑CTTTTTTTTTTTTTTTTGTAACTAAAATAAAATTTAACCAATTATTAAAATTTAAATTTAACatatat                                                    >  2:6511349/1‑126 (MQ=255)
                                                                                  atacTTTAAATTAAAATAAAATTATATAAATATAAATTTTTTAAATTAAAATATTAAAAAT‑‑TTTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATg                                                     <  2:6972936/125‑1 (MQ=255)
                                                                                   cccTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGaa                                                                                                                                            >  2:3719634/1‑47 (MQ=255)
                                                                                   cccTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑CTTTTTTTTTTTTTTTTGGAAAAAAAAAATAATTTTACAAATTATTATaatttcaatttaaaatataaat                                                  >  2:3966029/1‑117 (MQ=255)
                                                                                   caattttattttaaaTAAAATTATATAAATTATATTTTTTTATATAAAAATATTTAAA‑‑‑‑ATTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAAt                                                  <  1:2856428/116‑1 (MQ=255)
                                                                                    ccTTTAAAATAAAAAAAAATTTAAAAAATATAAAATTTTTAAATAAAAAAATTAAAA‑‑‑‑ATTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAAtt                                                 <  2:5737461/128‑1 (MQ=255)
                                                                                    catttaaatttaaaTTAAATTTTTTAAAATAAAATTTTTTAAATAAAAATAATAAAA‑‑‑‑ATTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAAtt                                                 <  1:5161417/126‑1 (MQ=255)
                                                                                       ttAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑C‑‑‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTAACAGATGAATTGAttta                                           >  2:6851685/1‑127 (MQ=255)
                                                                                        tAAATTAAAATAACATTATATAAATATAAATTTTTTAAATATAAATATTAAAA‑‑‑‑AATTTTTTTTTTTTTTTGTAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATTAATTGAtt                                             <  2:3836521/128‑1 (MQ=255)
                                                                                        tAAATTAAAATAAAAATATATAAAGATAAATTTTTTAAATTAAAAAATAAAAA‑‑‑‑ATTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGAtt                                             <  2:1916153/128‑1 (MQ=255)
                                                                                        tAAAATCAAATAAAATTATATAAATATAAATTTTTTAAATAAAAATATTAAAA‑‑‑‑ATTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttc                                           <  2:201608/128‑1 (MQ=255)
                                                                                         aaaTTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAA‑‑‑‑ATTTTTTTTTTTTTTTTAGAAATAAAATTTAATTTTAAAAATTATTAGAATTTAAATATAAAAGATAAATTGAtt                                             >  1:5981835/1‑128 (MQ=255)
                                                                                         aaaTTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑CTTTTTTTTTTTTTTTGGAAATAACATATAATTTTACCAATTTTTAGAATTACAATTTAACAGaataatatattta                                           >  1:3644814/1‑116 (MQ=255)
                                                                                            tttaaaTAAAATTATATAAATATAAATTTTTTAAATAAAAATATTAAAAA‑‑‑‑TTTTTTTTTTTTTTTTTGTAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttct                                          <  2:5141828/125‑1 (MQ=255)
                                                                                            ttaaattAAAATTATATTAATATAAATTTTTTAAATAAAAATATTAAAA‑‑‑‑CTTTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttct                                          <  2:3119809/122‑1 (MQ=255)
                                                                                            ttCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑C‑‑TTTTTTTTTATTTTGGAACAAACAAAAAATATTACCAATTATTAGAATATAAATATAACAAATTAatttatttataaa                                       >  1:1127511/1‑123 (MQ=255)
                                                                                              ataataatATATTATAAAATAAAATTTTTTAAAATAAAATATAAAAAA‑‑‑‑TTTTTTTTTTTTTTTTTGGAAATAAAATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttcttc                                        <  1:3532525/126‑1 (MQ=255)
                                                                                                    aaaTTATATAAATTTAAATTTTTTAAATAAAAAATTTAAAAATTTTTTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCtaa                                     <  2:1551028/126‑1 (MQ=255)
                                                                                                      aTTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑CTTTTTTTTTTTTTTTGAAACTAAAATATAATTTTACCAATAATAATAATTTCAATTTCACAGATTAATTTATATGTACTAATAAGTTg                              >  1:4512506/1‑128 (MQ=255)
                                                                                                        ttattaattatatatTTTTTTAATATATATATTACTT‑‑‑‑ATTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGt                             <  1:911330/119‑1 (MQ=255)
                                                                                                          ttttatttttatttttttAAAATAAAATATTTATA‑‑‑‑TTTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCt                           <  2:219236/116‑1 (MQ=255)
                                                                                                          tataAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑C‑‑‑TTTTTTTTTTTTTGGAAATAACATATAATTTTACCAATTATTAGAATTTAAATTTCACACATGAATTGATTTCTACTAATAATTTGTCtaaa                        >  1:5554270/1‑126 (MQ=255)
                                                                                                          atttatttaataTTTTTTTAATTATAATATTTAAT‑‑‑‑TTTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCt                           <  1:609363/117‑1 (MQ=255)
                                                                                                          aataAACATAAATTTTTTAAATAAAAATATTATAA‑‑‑‑ATTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCt                           <  1:6901439/127‑1 (MQ=255)
                                                                                                           attaatttAAATTTTTTTAATAAATATATTTAAA‑‑‑‑ATTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCta                          <  1:667346/121‑1 (MQ=255)
                                                                                                           ataAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑CTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACAAATTATTAAAATTTCAATTTCAAAAATAAATTGATTAATTCTAATAATTTGTatat                         >  1:729693/1‑128 (MQ=255)
                                                                                                           ataAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑C‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTATAATTTCAATTTCAAATATTAATTTATTTATTCTAATAAtttttattta                        >  2:2337471/1‑121 (MQ=255)
                                                                                                             aaatttAAATTTTTTTAACTAAAATATTAAAA‑‑‑‑CTTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCtata                        <  1:3352396/123‑1 (MQ=255)
                                                                                                             aaaGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑CTTTTTTTTTTTTTTTTTTGAAATAAAAAATAATTTTACAAATTATTAAAATTTAAATTACACATATAAATTTATTTATTATAAAAATTTTTatat                         >  1:4082662/1‑128 (MQ=255)
                                                                                                                gATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑CTTTTTTTTTTTTTTTTTAACTAAAATATAATTTTACCAATTATTAAAATTTCAATTTAAAATATAAAATGATTTCATATAATAATTTTTCtatatata                    >  2:4195082/1‑126 (MQ=255)
                                                                                                                 ttataTTTTTTAAATAAAAATATTAAAA‑‑‑‑ATTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGa                    <  1:5742312/124‑1 (MQ=255)
                                                                                                                  tAAATTTTTTAAATAAAAATATTAAA‑‑‑‑AATTTTTTTTTTTTTTTGGAACTAACATATAATTTTAACAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATg                  <  2:1032544/128‑1 (MQ=255)
                                                                                                                   aaaaTTTTTAAATAAAAAAATTTAAA‑‑‑‑AATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATg                  <  2:7103353/128‑1 (MQ=255)
                                                                                                                    aaTTTTTTAAATAAAAATATTAAAAT‑‑‑TTTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATg                  <  2:4740828/128‑1 (MQ=255)
                                                                                                                         tttAAAGAAAAATATTACAA‑‑‑‑CTTTTTTTTATTTTTTTGGAAATAACATATAATTTTACCAATTATTAAAATTAAAATTTCAAAATTAAATTTAATACTTATAATAATTTGTCTATATAAAtttttttt            >  1:3773890/1‑128 (MQ=255)
                                                                                                                          ttAAATAAAAATATTACAA‑‑‑‑ATTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTta           <  2:5912957/128‑1 (MQ=255)
                                                                                                                               gAAAAATATTACAA‑‑‑‑CTTTTTTTTTTTTTTTTGAAAATAACATAAAATTTTACCAATTATTAAAATTACAATTTCACAAATTAAATTATTTATAATAATAATATTAAAATATATATGTATTTtataaat      >  1:4641761/1‑125 (MQ=255)
                                                                                                                               |                                                                                                                                            
TAATATCTCCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑‑‑CTTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAAT  >  CP016816/76751‑77009

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: