Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP01681687,9030T.77.4% 4993.3 / inf 2518intergenic (+30/‑830)JCVSYN2_00345/JCVSYN2_00350hypothetical protein/50S ribosomal protein L31
Reads supporting (aligned to +/- strand):  ref base T (280/260);  new base . (890/961);  total (1197/1321)
Fisher's exact test for biased strand distribution p-value = 1.29e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 2959 total aligned reads displayed.

TGTGTAACAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATAT‑TCATGGAAAGT‑CAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCCA‑TTTTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACTAATTAATTACCTAATATTATTTTAG  >  CP016816/87776‑88030
                                                                                                                                  |                                                                                                                               
tttgtTACAAAATTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATAT‑TCATGGAAAGT‑CAAATGAATATTTATATTTTTAATAGCTGATTTAAATGGATTATTAAACAATCCA‑t                                                                                                                                 <  2:2138851/126‑1 (MQ=255)
 gtgtAACAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATAT‑TCATGGAAAGT‑CAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCCA‑tt                                                                                                                                >  1:1875426/1‑128 (MQ=255)
 gtgtAACAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATAT‑TCATGGAAAGT‑CAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCAA‑tt                                                                                                                                >  1:6138142/1‑128 (MQ=255)
 gtggAACAAAAGTGGTTATTGATTTGCAATTAAATTTCAAATTGATAATAAAATTTTTAT‑TCATTGAAAGT‑CAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCCA‑tt                                                                                                                                <  1:3990390/128‑1 (MQ=255)
   ttAAAAAAAGTGGTTATTTAGTTGCAATTAAAGTTCAAATTGATAATAAAATTGTTAT‑TAATGGAAAGT‑CAAATGAATATTTATATTTTGAATATCTGTTTTAAATGGATTATTAAACAATCCA‑tttt                                                                                                                              <  1:3216592/127‑1 (MQ=255)
       cAAATGTGGTTTTTTTTTTTCAATTAAAGTTCAAAATTAAAATAAAAATTATAT‑TAATGGAAATT‑CAAATGAATATTTAGTTTTTTAATAGCTGATTTAAATGGATTATTTAACAATTCA‑tttttttt                                                                                                                          <  1:7232107/128‑1 (MQ=255)
       cAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATAT‑TCATGGAAAGT‑CAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCCA‑tttttttt                                                                                                                          >  1:6802552/1‑128 (MQ=255)
       cAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATAT‑TCATGGAAAGT‑CAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCCA‑tttttttt                                                                                                                          >  1:1696429/1‑128 (MQ=255)
        aaaaGTGGATTTTGTGTTGAAATTATATTTAAAATTGATAATAAAATTTATAT‑TAATGTAAATT‑AAAATGAATATTTTTTTTTTGAATAGCTGTTTTAAATGGTTTTTTAAACAATCCA‑ttttttttt                                                                                                                         <  1:4937686/128‑1 (MQ=255)
          aaGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATAT‑TCATGGAAAGT‑CAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCCA‑ttttttttttt                                                                                                                       <  1:5995667/128‑1 (MQ=255)
           aGTTGTTATTGATTTGCAATTAAATTTAAAATTGATAATAAAATTTATAT‑TCATGTAAATT‑CAAATGAATAATTAGATTTTGAATATCTGATTTAAATGGATTATTAAACAATCCA‑tttttttttttt                                                                                                                      <  2:2559659/128‑1 (MQ=255)
            gTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATAT‑TCATGGAAAGT‑CAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCCA‑ttttttttttttt                                                                                                                     >  1:7109180/1‑128 (MQ=255)
            gTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATAT‑TCATGGAAAGT‑CAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCCA‑ttttttttttttt                                                                                                                     <  2:2310622/128‑1 (MQ=255)
             tGGTTATTGAGTTGCAAGTTAAGTTAAAATTTATAAAAAAATTGATAA‑TCATTGAAACT‑CAAATGAATATTTAGATTTTTAAAAGCATATTTAAATGGATTATTAAACAATCCA‑tttttttttttttt                                                                                                                    <  2:1600009/128‑1 (MQ=255)
              ggTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATAT‑TCATGGAAAGT‑CAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAAAAATCCA‑ttttaatttttataa                                                                                                                   >  1:82545/1‑124 (MQ=255)
                ttATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATAT‑TCATGGAAAGT‑CAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCCA‑TTTTTTTTTTTTTTaaa                                                                                                                 >  2:852311/1‑128 (MQ=255)
                 tATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATAT‑TCATGGAAAGT‑CAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCCA‑tttttttttttttaaata                                                                                                                >  1:1436230/1‑123 (MQ=255)
                 tATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATAT‑TCATGGAAAGT‑CAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCCA‑TTTTTTTTTTTTTTtaat                                                                                                                >  2:2676959/1‑128 (MQ=255)
                  aTTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATAT‑TCATGGAAAGT‑CAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCCA‑ttttttttttttttttaat                                                                                                               >  2:7172175/1‑124 (MQ=255)
                   ttGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATAT‑TCATGGAAAGT‑CAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCCA‑TTTTTTTTTTTTTTtaataa                                                                                                              >  2:3216592/1‑128 (MQ=255)
                    ttatttGCAATTAAAGTTCAAATTGATAATAAAATTGATAT‑TCATGGAAAGT‑AAAATTAATATTTATATTTTTTATATCTGATTTAAATGGATTATTAAACAATCCA‑‑TTTTTTTTTTTTTTAATaaaa                                                                                                            <  2:3094983/124‑1 (MQ=255)
                      tttattaattAAATTTCAAATTTATATTAAAATTGTTAT‑TTATTGAAATT‑TAAATTAATATTTATATTTTTAATATCTGATTTTAATTGATTATTAAACAATACA‑‑TTTTTTTTTTTTTTAATAAAAAg                                                                                                          <  1:4814734/119‑1 (MQ=255)
                      aGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATAT‑TCATGGAAAGT‑CAAATGAATATTTAGATTTTGAATAGCTGATTTAAATTGATTATTAAAAAATCCA‑‑TTTTTTTTTTTTTTAATaaaaat                                                                                                          >  2:6362516/1‑127 (MQ=255)
                      aGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATAT‑TCATGGAAAGT‑CAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCCA‑‑‑‑TTTTTTTTTTTTAATAAAAAGAc                                                                                                        >  2:6142142/1‑128 (MQ=255)
                        ttGCAATGAAAGGTCAAATTGATAAAAAAATTGATAT‑TGATGGAAATT‑CAAATGAATTTTTTTAATTTGTATAGCTGATTTAAATGGATTATTAAACAATCCA‑TTTTTTTTTTTTTTTAATAAAAAGa                                                                                                         <  2:5534441/128‑1 (MQ=255)
                           cAAGTAAAGTTCAAATTGATAATAAAATTGATAT‑TCATGGAAAGT‑CAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCCA‑‑TTTTTTTTTTTTTTAATAAAAATACTca                                                                                                     >  2:1993404/1‑128 (MQ=255)
                            aaGTTAATTTCAAAATGATAATAAAATTGATAT‑TAATTGAAAGT‑CAAATGAATATTTAGATTTTGAATAGCTGATTTTAATGGATTATTAAACAATCCA‑‑TTTTTTTTTTTTTTAATAAAAAGACTcac                                                                                                    <  1:5867570/128‑1 (MQ=255)
                             attAAATTTAAAATTTATAATAAAATTGATAA‑TCATGGAAATT‑CAAATGAATATTTAGAATTTGAATAGCAGATTTAAATGGATTATTAAACAATCCA‑‑‑TTTTTTTTTTTTTAATAAAAAGACTCACAt                                                                                                  <  2:5668347/126‑1 (MQ=255)
                             aGTAAATTTAAAATTTATAATAAAATTGATAT‑TTATGGAAATT‑CAAATTAATTTTTATTTTTTTAATATCTGTTTTAAATGGATTATTAAACAATCCA‑‑TTTTTTTTTTTTTTAATAAAAAGACTcaca                                                                                                   <  1:6893121/128‑1 (MQ=255)
                              tttaaGTTCAAATTTTTAATAAAATTGTTTT‑TTATGGTAAGT‑CAAATGAATATTTTGTTTTTGAATAGCTTATTTAATTGGTTTATTAAACAATCCT‑TTTTTTTTTTTTTTTAATAAAAAGACTcaca                                                                                                   <  1:968380/125‑1 (MQ=255)
                              ttAAAGTTAAAAATTTTAATAAAATTTATTT‑TAATTGAAATT‑CAAATTAAAATTTATATTTTTAATATATTATTTAAATGGTTTATTAAA‑AAAACA‑ATTTTTTTTTTTTTTAATAAAAAGACTCACAt                                                                                                  <  2:3568222/127‑1 (MQ=255)
                              gTAAAGTTAAAATTTATAATAAAATTGATAT‑TCATTGAAAGT‑CAAATGAATATTTAGATTTTGAATAGCTGTTTTAAATGGATTATTAAACAATCCA‑‑TTTTTTTTTTTTTTAATAAAAAGACTcactt                                                                                                  <  1:646902/128‑3 (MQ=255)
                               ttaattttaaaTTGTTAATAAAATTTTTTT‑TTTTTGTAATG‑AAAATTTATATTTTTATTTTTTAAATCTGATTTAAATTGTTTAATAAACAAACCA‑‑TTTTTTTTTTTTTTAATAAAAAGACTCACATa                                                                                                 <  2:602157/120‑1 (MQ=255)
                               tAAATTTAAAATTTATAATAAAAATTTTAT‑TCATTGAAAGT‑CAAATTTATTTTTATATTTTTAATATCTGATTTAAATGTATTATTAAACAATCCA‑‑TTTTTTTTTTTTTTAATAAAAAGACTCACTTa                                                                                                 <  1:1148591/128‑1 (MQ=255)
                               gaaaGTTCAAATTGATAAAAAAATTGATAT‑TCAAGGAAAGT‑CAAATGAATATTTAGATTTTTAATAGCTGATTTAAATGGATTATTAAACAATCCA‑‑‑TTTTTTTTTTTTTAATAAAAAGACTCACATaa                                                                                                <  1:6361946/127‑1 (MQ=255)
                                 aatttCAAATTTATAATAAAATTGATAT‑TAATTGAAATT‑CAAATGAATATTTAGATTTTTTATATCTGATTTAAATTTTTTATTAAAAAATACA‑‑TTTTTTTTTTTTTTAATAAAAAGACTCACATAAg                                                                                               <  1:3495325/125‑1 (MQ=255)
                                 aatttCAAATTTAAAATAAAATTGATTT‑TAATGTAAAGT‑AAAATTAATATTTAGTTTTTTAATAGCTTTTTTAAATGGTTTATTAAAAAATCCA‑‑TTTTTTTTTTTTTTAATAAAAAGACTCACTTatg                                                                                               <  1:5480672/125‑3 (MQ=255)
                                 aaGTTCAAATTGATAATAAAATTGATAT‑TCATGGAAAGT‑CAAATGAATATTTAGATTTTGAATAGCTGATTTAAATTGATTATTAAACAATCCA‑‑‑TTTTTTTTTTTTTAATAAAAAAACTCAAATaaat                                                                                              >  1:5760119/1‑126 (MQ=255)
                                  tttttaaaTTTTTAATAAAATTTAAAA‑TCATTGAAATT‑CAAATTAATATTTTTATTTTTAATATCTTATTTAAATTGATTATTAAACAATCCA‑TTTTTTTTTTTTTTTAATAAAAAGACTCACATAAg                                                                                               <  1:305025/123‑1 (MQ=255)
                                  aGTTCAAATTGATAATAAAATTGATAT‑TCATGGAAAGT‑CAAATGAATATTTAGATTTTTAATAGCTGATTTAAATGGATTATTAAACAATCCA‑‑‑‑TTTTTTTTTTTTAATAAAAATAATCACATAATTGa                                                                                            >  2:4843073/1‑128 (MQ=255)
                                   tctaaaaTTGATAATAAAATTTAAAT‑TATTGGAAATT‑TAAATTAATATTTTTTTTTTGAATAGCTGATTTAAATGGATTATTAAAAAATCAA‑TTTTTTTTTTTTTTTAATAAAAAGACTCACATAAGt                                                                                              <  1:5394374/124‑1 (MQ=255)
                                        aaTTGATAATAAAATTGATAT‑TCATGGAAAGT‑CAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCAA‑‑‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTaaa                                                                                       >  2:2472200/1‑128 (MQ=255)
                                         atttttaataaAATTTTTAT‑TTAATGAAATT‑AAAATTTATATTTATTTTTTTTATATCTGATTTAAATGTATTATTAATCAATTCA‑‑TTTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCaa                                                                                       <  1:384863/123‑1 (MQ=255)
                                         aTTGATAATAAAATTGATAT‑TCATGGAAAGT‑CAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCCA‑TTTTTTTTTTTTTTTAATAAAAAAAAACAAATAAGtaataaa                                                                                        >  1:2748486/1‑122 (MQ=255)
                                          ttGATAATAAAATTGAAAT‑ACATGGAAAGT‑CAAATTAAAATTTAGATTTTGAATAGCTGATTTAAATGTATTATTAAACAATCCA‑‑TTTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAAt                                                                                      <  2:6494814/128‑1 (MQ=255)
                                           tttttataaAATTTATTT‑TAATTGAAAGT‑CAAATGAATATTTATATTTTTAATATGTGATTTAAATGGATTATTAAACAATGCATTTTTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCaa                                                                                       <  1:5642133/123‑1 (MQ=255)
                                           ttataataAAATTTTTAT‑TCATTGAAATT‑TAAATGAATTTTTATATTTTGAATAGCTGTTTTAAATTGATTATTAAAAAATCCA‑TTTTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAAt                                                                                      <  1:2598332/126‑1 (MQ=255)
                                              taataaAATT‑TTATATCATTGAAATTACAATTAAATATTTTATTTTTAAATACCTATTTTAATTGCATT‑TTAAAAAAACCA‑‑TTTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGTGTCAATTGCg                                                                                  <  2:1743910/128‑1 (MQ=255)
                                               aataaAATTTATAT‑TTATTGAAATT‑CAAATTAATAATTATATTTTTAATAGCTGATTTAAATTGATTATTAAAAAATCCA‑‑TTTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAATTGCGa                                                                                 <  2:5914857/128‑1 (MQ=255)
                                                ataaAATTGATTT‑TTATTGAAAGT‑AAAATTTATATTTAGATTTTTAATAGCTGTTTTAAATGGATTATTAAAAAATCCA‑‑TTTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAATTGCGat                                                                                <  1:6662931/128‑1 (MQ=255)
                                                   aaaTTTATAT‑TCATTGAAAGT‑CAAATGAATATTTAGATTTTGAATATCTGATTTAAATGGATTATTAAACAATCCA‑‑‑‑‑TTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATtta                                                                          <  2:1203086/128‑1 (MQ=255)
                                                    aaTTGATAT‑TCATGGAAAGT‑CAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCCA‑‑TTTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAATTGCGattatt                                                                            <  2:3350524/128‑1 (MQ=255)
                                                     aTTGATAT‑TCATGGAAAGT‑CAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCCA‑TTTTTTTTTTTTTTTAATAAAAAAACTCACATAATTTATTAAATTGAGattatt                                                                            >  2:5266328/1‑128 (MQ=255)
                                                     aTTGATAT‑TCATGGAAAGT‑CAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCCA‑‑TTTTTTTTTTTTTTAATAAAAATACACAAATAATTTATTAAATTTCGATTAttt                                                                           >  2:5413247/1‑128 (MQ=255)
                                                       ttttat‑TAATTGAAATT‑AAAATTAATATTATTATTTTTAATTATTGATTTTAATTGATTAATAAAAAAACCA‑‑‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATttaat                                                                        <  2:3887047/125‑1 (MQ=255)
                                                        tttat‑TAATTGAAATT‑GAAATTAAATTTTATTTTTTGTATATTTTATTTAAATGGTTTTTTTAAAAATACA‑TTTTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATttaa                                                                         <  1:6992621/126‑1 (MQ=255)
                                                         atat‑TCATGGAAAGT‑CAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCCA‑‑TTTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAATTACGATTATttaatt                                                                       >  1:6581151/1‑128 (MQ=255)
                                                          tat‑TCATGTTAAGT‑CAAATGAATATTTATATTTTTAATATATTATTTAAATTGATTATTAAACAATCCA‑TTTTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATttaatt                                                                       <  2:1889022/128‑1 (MQ=255)
                                                          tat‑TCATGGAAAGG‑AATTTGAATTTTTAGATTTTTAATTGCTGATTTAAATGGATTATTAAACAATACA‑‑‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATttaattat                                                                     <  2:6596867/128‑1 (MQ=255)
                                                           at‑TAATGGAAATT‑CAAATTAATATTTAGATTTTGAATAGCAGAATTAAATTCATTATTAAACAATCCATTTTTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATttaatt                                                                       <  2:6226839/128‑1 (MQ=255)
                                                              tCATGGAAAGT‑CAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCCA‑‑TTTTTTTTTTTTTTAATAAAAATACTCAAAAAAATTAGTCAATTGAGATTATttaattatta                                                                   >  2:5790923/1‑128 (MQ=255)
                                                               cATGGAAAGT‑CAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCCA‑‑TTTTTTTTTTTTTTAATAAAAAGACTAACAAAATTGAGTCAATTTCGATTATttaattataaa                                                                  >  1:2885232/1‑128 (MQ=255)
                                                               aattgtaatt‑CAAATTTATATTTTGTTTTTTAATATGTGTTTTAAATTGATTATTAAAAAATACA‑‑TTTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATttaactattaa                                                                  <  1:3320562/119‑1 (MQ=255)
                                                                      aGT‑CAAATGATTATTTAGATTTTGAATAGCTGATATAAATGGATTATTAAACAATCCA‑‑‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCtt                                                          <  2:496477/128‑1 (MQ=255)
                                                                        t‑CAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCCA‑‑TTTTTTTTTTTTTTAATAAAAATAAAAAAATAATTAATAAAAATAATATTATTtaattattaataataattt                                                         >  2:4429937/1‑123 (MQ=255)
                                                                        gtgaaaTGTATATTTTTATTTTTAATTTTTTATTTAAATTTATTATTAAAAAATCTA‑‑TTTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAATTGAGATTATTTAATTATTAATTATTCtt                                                          <  1:4104228/125‑1 (MQ=255)
                                                                             aTGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCCA‑‑TTTTTTTTTTTTTTAATAAAAAGACACAAAAAAGTGACTCAATTGCTATTATataaatatatattaatattatatt                                                     >  2:682009/1‑118 (MQ=255)
                                                                              tttatatTTAGTTTTTGTAAAGCTTATTTAAATGGTTTATTAAACAATACA‑‑TTTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTtgatga                                                    <  1:2339587/125‑1 (MQ=255)
                                                                               taaTATTTTGATTTTTAATAGCTGATTTAAATGGTTTATTAAACAATCC‑‑TTTTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGaa                                                   <  1:3786186/127‑1 (MQ=255)
                                                                               gAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCCA‑‑TTTTTTTTTTTTTTAATAAAAAAACACACATAAATGAGTCAATTGCGATTATTTAATTATTAATTATTATTTGATTaa                                                   >  2:4043904/1‑128 (MQ=255)
                                                                                tatttttattttttTAATATCTTATATAAAAGGAATTATAAACAATCCA‑TTTTTTTTTTTTTTT‑ATAAAAAGACTCACATAATTGAGTCAATTGCGATTATTAAATTATTAATTATTCTTTGATGAAc                                                  <  2:766346/118‑1 (MQ=255)
                                                                                  tatTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCCA‑‑TTTTTTTTTTTTTTAATAAAAAAACTAAAATAATTTATTAATTTGCTTTTATTTATTTATTAATTATAATTTGATTAACTa                                                >  1:1601465/1‑128 (MQ=255)
                                                                                   ttttAGATTTTTTATAGCTGTTTTAAATGGATTATTAAAAAATCCA‑‑TTTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTAt                                               <  1:4386366/127‑1 (MQ=255)
                                                                                   atTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCCA‑‑TTTTTTTTTTTTTTAATAAAAAAAAACACATAATTGATTCAATTGCAATTATTTAATTATTATTTATTCTTTTATGAACTAt                                               >  1:1009796/1‑128 (MQ=255)
                                                                                    tttattttttGAATATCTTATTTAAATTGATTATTAAAAAATAAA‑TTTTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTAt                                               <  2:4308526/122‑1 (MQ=255)
                                                                                         aTTTTGAATAGCTGATTTAAATGGATTATTAAACAATCCA‑‑TTTTTTTTTTTTTTAATAAAAAAACTAAAATAATTTAATCAATTTCGATTATTTAATTATTAATTATTATTTTATTAACTATTTAcat                                         >  2:4728389/1‑126 (MQ=255)
                                                                                                aTAGCTTATTTAAATGGATTATTAAACAATCCA‑‑‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACctaaagaaag                                 <  2:2819120/128‑9 (MQ=255)
                                                                                                aTAGCTGATTTAAATTGATTTTTATAATATAGA‑‑TTTTTTTTTTTTTTAATAAAAAGACTCACATTAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTa                                  <  2:5105234/128‑1 (MQ=255)
                                                                                                   gCTTATTTAAATTGATTATTAAACAATTCA‑TTTTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAgg                                <  2:7066354/128‑1 (MQ=255)
                                                                                                   gCTGATTTAAATGGATTATTAAACAATCCA‑‑TTTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTTTTATTTGATCAACTATTAACCTTTATTTAGGt                               >  1:462937/1‑128 (MQ=255)
                                                                                                   gCTGATTTAAATGGATTATTAAACAATCCA‑‑TTTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTTATGAAATATTTACATTTATTTAGGt                               >  1:2017184/1‑128 (MQ=255)
                                                                                                   gCTGATTTAAATGGATTATTAAACAATCCA‑‑TTTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTATTTGATGAACTATTTACATTTATTTAgtt                               >  1:5074360/1‑126 (MQ=255)
                                                                                                         ttAAATTGATTATTAAAAAATACA‑TTTTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACta                          <  1:248101/128‑1 (MQ=255)
                                                                                                         ttAAATGGATTATTAAACAATCCA‑‑TTTTTTTTTTTTTTAATAAAAAGACACACAGAAGTGTGTAAATTGGGATTATTTAATTATTAATTTTTATTTGATAAAATATTTACCTTTCTTTAGTTAAAtat                         >  1:1288161/1‑127 (MQ=255)
                                                                                                            aaTGGATTATTAAACAATCCA‑‑TTTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGt                               >  1:4240822/1‑119 (MQ=255)
                                                                                                             aTGGATTATTAAAAAATCCA‑‑‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACtaattaat                    <  2:1097559/128‑1 (MQ=255)
                                                                                                              tGGATTATTAAACAATCCA‑‑TTTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTATTTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACtaattaat                    >  2:6721028/1‑128 (MQ=255)
                                                                                                              tGGAATATTAAACAATGCA‑‑‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACTaattaatt                   <  1:4493961/128‑1 (MQ=255)
                                                                                                               ggATTATTAAACAATCCA‑‑TTTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACTaattaatt                   <  2:2962478/128‑1 (MQ=255)
                                                                                                               ggATTATTAAACAATACA‑‑TTTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACTaattaatt                   <  2:3442765/128‑1 (MQ=255)
                                                                                                                gtttattaAATAATTCA‑‑‑TTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACTAATTAATTAc                 <  2:1337787/126‑1 (MQ=255)
                                                                                                                  ttattaAACAATCCA‑‑TTTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACATTTCTTTAGGTAACTAATTAATTAcc                >  2:6954193/1‑128 (MQ=255)
                                                                                                                    tttaAAAAATACA‑‑TTTTTTTTTTTTTTAATAAAAATACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACTAATTAATTACCTa              <  2:4555022/127‑1 (MQ=255)
                                                                                                                     ttaTACAATCCA‑‑TTTTTTTTTTTTTTAATAAATAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACTAATTAATTACCTaa             <  2:3775150/128‑1 (MQ=255)
                                                                                                                     ttaAACAATCCA‑TTTTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACATTTCTTTATGTAAATAATTAATTACCTa              >  1:2193801/1‑128 (MQ=255)
                                                                                                                      taAACAATCCA‑‑TTTTTTTTTTTTTTAATAAAAAGACTCAAATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATTAACTATTTACATTTCTTTAGGAAACTAATTAATTACCTatt            >  1:3663155/1‑126 (MQ=255)
                                                                                                                      taAACAATCCA‑‑TTTTTTTTTTTTTTAATAAAAAGACTAAAATAAGTGAGTAAATTGCGATTATTTAATTTTTATTTATTATTTTATGAACTATTTAACTTTATTTAAGTAAATAATTAATTACCTAat            >  1:523331/1‑128 (MQ=255)
                                                                                                                       taataaTCCA‑‑TTTTTTTTTTTTTTAATAAAAATACTCAAATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACATTTATTTAGTTAACTAATTAATTACCTAata           >  1:6224498/5‑128 (MQ=255)
                                                                                                                       aaaCAATCCA‑TTTTTTTTTTTTTTTAATAAAAAGAAACAAATAATTGAGTCAATTTGTATTATTTAATTATTAATTATTCTTTTATTAACTATTTAAATTTCTTTAGTTAAATAATTAATTAcattat            >  2:1481145/1‑123 (MQ=255)
                                                                                                                            aTCCA‑‑TTTTTTTTTTTTTTAATAAAAAGACACAAATAAGTGAGGAAATTGCGATTATTTAATTATTAATTATTCTTTGATTAAATATTTACCTTTCTTTAGGTAAATAATTAATTACCTAATattatt      >  2:4170310/1‑128 (MQ=255)
                                                                                                                                  |                                                                                                                               
TGTGTAACAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATAT‑TCATGGAAAGT‑CAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAACAATCCA‑TTTTTTTTTTTTTTTAATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACTAATTAATTACCTAATATTATTTTAG  >  CP016816/87776‑88030

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑