Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816165,2510T.68.2% 2275.8 / inf 1904intergenic (+215/‑327)JCVSYN2_00665/JCVSYN2_00670tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser
Reads supporting (aligned to +/- strand):  ref base T (203/376);  new base . (882/359);  total (1090/814)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 2395 total aligned reads displayed.

TAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACT  >  CP016816/165124‑165378
                                                                                                                               |                                                                                                                               
taataTTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtt                                                                                                                                 >  1:2042320/1‑128 (MQ=255)
  atttttAGTTTCATTAATTTATAGTAATTGTATTTATTATTAATAAAATAAAACTATTATATTTTTATTTATTTTTTGTATATGCAAATTTTTAA‑‑AATTAATTTTAACTTGTAAAAAATAGCtttttt                                                                                                                             <  1:5204494/125‑1 (MQ=255)
    atTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtttttt                                                                                                                             >  2:5864792/1‑128 (MQ=255)
    atTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAAATTGTAAAAAAAATAtttttt                                                                                                                             >  2:3369921/1‑128 (MQ=255)
        aGTTTCATTAAATTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtttttttttt                                                                                                                         >  1:7228172/1‑128 (MQ=255)
         gTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCATATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttttttttt                                                                                                                        >  2:4614657/1‑128 (MQ=255)
         gTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttttttttt                                                                                                                        >  2:7173977/1‑128 (MQ=255)
            tCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtttttttttttttt                                                                                                                     >  1:1957157/1‑128 (MQ=255)
              aTTAATTTATCTCACTTTTATGTATTATTAATAAAATAAAAATATTATTTTTTTAGATATTTTTTTTATATGCAAATTTTTAAAAAATTAAATTGAAATTGTTAAAAATAGCtttttttttttttttt                                                                                                                   <  1:877894/128‑1 (MQ=255)
               ttAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtttttttttttttttta                                                                                                                  >  2:2212470/1‑127 (MQ=255)
                  aTTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtttttttttttttttttaat                                                                                                               >  1:1148497/1‑125 (MQ=255)
                   tttATCGCACTTGTATGAATTTGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAAATTGTAAAAAATAGCtttttttttttttttattatt                                                                                                              >  1:6278165/1‑125 (MQ=255)
                   tttATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttttttttttttttataat                                                                                                              >  1:2470338/1‑123 (MQ=255)
                   tttATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttttttttttttttaaaat                                                                                                              >  2:5353928/1‑123 (MQ=255)
                   tttATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtttttttttttttatataatt                                                                                                              >  2:3718835/1‑120 (MQ=255)
                    ttATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtatttttttattttttataatg                                                                                                             >  1:3480553/1‑122 (MQ=255)
                     tttagCAATTGTATGAATTATTAATAAAATAAAAATATTATATTTTTATATATTTTTTTTATATGCAAATTTTTAAAAAATTAATTTTAAATTGTAAAAAATAGCttttttttttttttttatattgg                                                                                                            <  1:6964098/124‑8 (MQ=255)
                        cGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTGTTTAGATATTTTTTTTATATGCAAATTTTTAAAAAATAAATTTGAACTTTTAATAAATAGTttttttttttttttttatatttaaat                                                                                                         >  1:4650660/1‑118 (MQ=255)
                         ggaCTTGTATGAATTATTAATAAAATAAAAATATTATCTTTTTAGATATTTTTTTTATATGCAAATTTTTAAAAAATTAATTTTAACTTTTAAAAAAAAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAat                                                                                                     <  2:4295850/126‑1 (MQ=255)
                            ttattttttattattAATAAAATAAAAATATTATATTTTTATATATTTTTTTTTAATGGAAATTTTTAAAAAATTTATTTTAACTTTTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAAtata                                                                                                  <  1:3797924/119‑1 (MQ=255)
                            cTTTTATGAATTATTAAGAAACTAAAACTATTATATTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAatat                                                                                                   <  2:5621551/128‑1 (MQ=255)
                            cTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTATTTTATAATTAAAata                                                                                                    >  2:171269/1‑128 (MQ=255)
                               ttattcataaGTAACAAATAAAAAAAAATATATTTTTTGATATTTTTTTTATTTTCAAATTTTTAAAAAATTAATTTTAACTTGTAAAAAAAAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAAt                                                                                               <  2:4720282/119‑1 (MQ=255)
                               gTATGAATTATTAAGTAACAAAAAATATTATCTTTTTATTTATTTTTTGTTTATTCAAATTTTTAAAAAATTAATTTGAAATTTTTAAAAATA‑‑‑‑TATTTTTTTTTTTTTTTATAATGGAAATATAAAtt                                                                                              <  1:156092/128‑1 (MQ=255)
                                tttGAATTAGTTAGAAACTAAAACAATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGATCTTTTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAAtt                                                                                              <  2:2063923/126‑1 (MQ=255)
                                tATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGGAAATATaa                                                                                                 <  2:2318100/124‑1 (MQ=255)
                                    atttAGTAATAAAATAAAAAAATTATATTTTTAGATATTTTTTTTATATGCAAATTTTTAAAAAATTAATTTTAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAg                                                                                          <  2:6170362/126‑1 (MQ=255)
                                      ttattaattaaataaaaattTTTTTTTTTTATATATTTTTTTTTTTTTCAAATTTTTAAAAAATTTATTTTAAATTTTAAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGt                                                                                        <  1:2661740/116‑1 (MQ=255)
                                      ttattaATAAAATAAAAATTTTATATTTTTAGTTATTTTTTGTATATTATAATTTTTAAAAAATTAATTTTAAATTTTAAAAAAT‑‑‑TTCTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGt                                                                                        <  2:1867992/128‑1 (MQ=255)
                                      atAGTAATAAAATAAAAAAATTTTAATTTTAGATATATTTTTTATATCCAAATTTTTAAAAAATTAATTTTAAAATTTAAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGt                                                                                        <  1:2885916/127‑1 (MQ=255)
                                       tattaataaAATAAAAATATTATTTTTTTATATTTTTTTTTTTTATTAAAATTTTTAAAAAATTAATTTTAAATTTTAAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTa                                                                                       <  2:6961542/125‑1 (MQ=255)
                                       tAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGTTa                                                                                       >  2:5943556/1‑128 (MQ=255)
                                        attaattaaataaaacttTTATATTTTTATATATTTTTTTTATATGCAAATTTTTAAAAAATTAATTTTAACTTGTAAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTAt                                                                                      <  1:475785/118‑1 (MQ=255)
                                        aGTAATAAAATAAAAATTTTATTTTTTTATATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTTAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTAt                                                                                      <  2:774713/128‑1 (MQ=255)
                                           aaGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTAAAATTGAAATATAAATTTTATTTAtttt                                                                                   >  1:183720/1‑128 (MQ=255)
                                             gAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑‑TTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTttgttg                                                                               >  1:6573935/1‑128 (MQ=255)
                                              aaactaaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGTATATATAAATTTTATTTATTttgttg                                                                               >  2:1170290/1‑128 (MQ=255)
                                               aactaaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTAGTTATttttttt                                                                               >  2:6269976/1‑127 (MQ=255)
                                                  taaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTAGTTATttttttttat                                                                            >  2:54758/1‑124 (MQ=255)
                                                  aaaaacaaATATTTTTTTATAAATTTTTTGTATATTGAAATTTTTAAAAAATTAAATTTAAATTGTAAAAAATTGC‑‑‑‑TTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTa                                                                           <  2:6668023/127‑1 (MQ=255)
                                                   aaatatttttagtttttATATTTTTTTTTTATATGCAAATTTTTTAAAAATTTATTTTTACTTTTTAAAAATA‑‑‑‑TCTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTaa                                                                          <  2:5138566/116‑1 (MQ=255)
                                                   aaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTATTTTTTTTTTTTTATATATT‑‑AAAAATAAATTTAAATTAttttttattat                                                                            >  1:4911277/1‑121 (MQ=255)
                                                   aaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGTTATTTTTTTGTcaa                                                                           >  1:3072311/1‑126 (MQ=255)
                                                   aaaaattTTATTTTTTTATATATTTTTTTTATTTTTAAATTTTTAAAAAATTAATTTTTACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTa                                                                           <  2:4449684/128‑1 (MQ=255)
                                                    aaactaTTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTATTAAAATTTAAATATAAATTTTATATATTTTTTTTTATaa                                                                          >  1:1703335/1‑128 (MQ=255)
                                                     aattattatTTTTTTTTATATTTTTTGTATAATCAAATTTTTAAAAAAATAATTTGAAATTGTAAAAAAT‑‑‑TTCTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAg                                                                         <  1:4227119/125‑1 (MQ=255)
                                                     aactaTTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTT‑‑‑TAATGGAAATATAATTTTTAGGTATTttgttttgaaag                                                                         >  1:6431134/1‑121 (MQ=255)
                                                        tattatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGTTATTTTTTTTTATaatt                                                                        >  2:6074430/1‑126 (MQ=255)
                                                        tattatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTaatttt                                                                      >  1:709866/1‑124 (MQ=255)
                                                        tattatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTAAAATGTAAATATAAATTTTAGGTATTTTGTTGTATaatttt                                                                      >  2:1576607/1‑124 (MQ=255)
                                                         attatttttttattatttttttTTTTATGCAAATTTTTAAAAAATTAATTTTTAATTTTTAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATc                                                                     <  1:215474/128‑1 (MQ=255)
                                                         attatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGTAATTTTTTTCTCTAATTAtaa                                                                    >  1:5497852/1‑126 (MQ=255)
                                                          ttatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATTAAAATATAAATTTTATGTAATTTTTTGTATAATTAtat                                                                    >  2:1939904/1‑126 (MQ=255)
                                                              cTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTTTTTTCTAATTATCTaaa                                                                 >  2:6549521/1‑128 (MQ=255)
                                                                ttttATATATTTTTTTTATATGCAAATTTTTTAAAAATTTATTTGAACTTTTAAAAAATA‑‑‑‑TCTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTaaaaaaa                                                             <  2:3986821/128‑1 (MQ=255)
                                                                ttttATATATTTTTTTTATAATCAAATTTTTAAAAAATTAATTTTAACTTTTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTaaaaaa                                                              <  2:901171/128‑1 (MQ=255)
                                                                ttttAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATTGAAATATAAATTTTAGGTATTTTTTTTTATAAGTAAATaaaaaa                                                              >  1:5366236/1‑128 (MQ=255)
                                                                 tttAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTATATAATGAAAAAATAAATTTTATTTATTTTTTTGTCTATTTATATaaaaaaa                                                             >  2:3288715/1‑128 (MQ=255)
                                                                  ttAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTATAATTAAAATTAAAATTTTATTTATTTTTTTTTAAAATTATATAAAAAAAt                                                            >  2:5279901/1‑128 (MQ=255)
                                                                   tttttatTTTTTTTTTATTTAAATTTTTTAAAAATTAATTTTTAATTTTAAAAAATA‑‑TGTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAAt                                                            <  1:4342651/124‑1 (MQ=255)
                                                                    aGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTAGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTTAAATGGAAATATAAATTTTATTTATTTTTTTTTATAATAATATaaaaata                                                             >  2:361964/1‑126 (MQ=255)
                                                                     tttatTTTTTGTATTTTTAAATTTTTTAAAAATTTATTTTAAATTTTTAAAAATA‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAg                                                          <  2:2929464/126‑1 (MQ=255)
                                                                     gATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATTGAAATATAAATTTTAGGTATTTTTTTTTATAATTATCTAAAAAAATATaa                                                        >  2:3481221/1‑128 (MQ=255)
                                                                         ttttttttttATGTAAATTTTTAAAAAATTAATTTTAAATTTTTAAAAATA‑‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAgg                                                     <  2:316038/128‑1 (MQ=255)
                                                                           ttttGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGAAAATAAAAATTTTAGTTATTTTTTTTTAAAATTAAATAAAAAAATAAAAAGaaa                                                   >  1:5776839/1‑128 (MQ=255)
                                                                            tttttatttttaaaTTTTTAAAAAATTAAATTTAAATTTTAAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaa                                                  <  1:23077/117‑1 (MQ=255)
                                                                             ttGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTATTTATTTTTTTTTATAATTATATAAAAAAATAAAAAGTaaaa                                                 >  2:2627631/1‑128 (MQ=255)
                                                                             ttGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTATTTATTTTTTTGTCTAATTATATAAAAAAATATAAAGGaaaa                                                 >  2:4148045/1‑128 (MQ=255)
                                                                             ttGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGTAAAAATAAATTTTAGTTATTTTTTTGTCTAATTATCTAAAAAAATATAAAGTaaaaa                                                >  1:3617099/1‑128 (MQ=255)
                                                                              tGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTATTTATTTTTTTTTATTATTATATAAAAAATTAGaaattataaa                                                >  2:4976789/1‑121 (MQ=255)
                                                                                ttttatgaaaTTTTTAAAAAATTTATTTTTAATTTTTAAAAATAG‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaaaaa                                               <  1:5058619/121‑1 (MQ=255)
                                                                                 atatGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATTTAAATAAAAATTTTATTTATTTTTTTTTATATTTTTATAAAAAAATATAAATTaaaaaa                                               >  2:2727507/1‑128 (MQ=255)
                                                                                 atatGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGGTATTTTGTTTTATAAGTTTCTAAAAAAATATAAAGGAAAAAata                                             >  2:2493677/1‑128 (MQ=255)
                                                                                 atatGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑‑TTTTTTTTTTTTTTATAATTTAAAATTAATTTTTAGGTATTTTTTTGTCAAATTATAAAAAAAAAAATAAAGTAAAAAATAtt                                           >  1:3210052/1‑128 (MQ=255)
                                                                                  tatttaaaTTTTTTAAAAATTTATTTTTAATTTTAAAAAAT‑‑‑TTCTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAatat                                            <  1:6146376/123‑1 (MQ=255)
                                                                                    tGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTAAAATGTAAATATAAATTTTATGTATTTTTTTTTATAAGTA‑AAAAAAAAATATAAAGGaatatcgtatg                                          >  2:3866015/1‑119 (MQ=255)
                                                                                    tGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATATTTTAAATATAAATTTTATGTTTTTTTTTTTCTAATTATATAAAAAAATAAAAATTAAAAAAttttt                                          >  1:331122/1‑127 (MQ=255)
                                                                                    tGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGTTATTTTTTTTTATAATTAAATAAAAAAATTTAAATGAAAAattatttt                                         >  2:6874385/1‑126 (MQ=255)
                                                                                       aaaTTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATATTGTAAATATAAATTTTAGTTATTTTTTTTTATAAGTATATAAAAAAATAAAAAGTAAAAAATAttttaa                                       >  1:1335864/1‑124 (MQ=255)
                                                                                          ttttTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGTTATTTTTTTTTAAAAGTATCTAAAAAAATAAAAAGGAAAAAATATTTTTaaa                                     >  1:6678825/1‑128 (MQ=255)
                                                                                           tttttaaaaattaattTTAAATTTTAAAAAATA‑‑TATTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTaaaa                                    <  1:4481690/120‑1 (MQ=255)
                                                                                               taaaaattaattTTTAATTTTAAAAAATA‑‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAAt                               <  1:6049654/124‑1 (MQ=255)
                                                                                                aaaaattaattTGTACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATa                              <  2:708977/125‑1 (MQ=255)
                                                                                                  aatttaattTGAATTTTTAAAAAATAG‑‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTa                           <  1:5933312/125‑1 (MQ=255)
                                                                                                   aattaattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTAT‑‑T‑GAAATATAAATTTTTTTTATTTTTTTTGAAAATTTAAAAAAAAAATTGAAATGAAAAAAAATTTTTTAATATAAttaaa                           >  1:4068380/1‑124 (MQ=255)
                                                                                                    attaattTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTGTAAGTATATAAAAAAATATAAAGGAAAAAATATTTTTAAAATTAATACTaaa                         >  2:6762651/1‑128 (MQ=255)
                                                                                                     ttaattTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGTAATATAAATTTTATGTTTTTTTTTTTGTAATTATATAAAAAAAAATAAATGAAAAAATATTTTTTAAATTAATAATaaa                         >  2:5755149/1‑128 (MQ=255)
                                                                                                     ttaattTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGGAAATTTAAATTTTAGGTTTTTTGTTTGATAATTATCTAAAAAATTAAAAATTAAAAAATATTTTTTAATGTTATCATaaat                        >  2:1318478/1‑127 (MQ=255)
                                                                                                     ttaattTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGGAAATTTAAATTTTAGGTTTTTTGTTGTCTATGTATATAAAAAAATAGAAAGGAAAAAATATTGTTAATAGTAATTCTaaat                        >  2:4808745/1‑127 (MQ=255)
                                                                                                     ttaattTGAACTTGTAAAAAATAGC‑‑‑‑‑TTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTATAAGTATCTAAAAAAATATAATGGAAATAATTTGTTTAAAAGTAATACTAAAat                       >  2:6409121/1‑128 (MQ=255)
                                                                                                         tttGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATTTAAATATAATTTATATGTATTTTGTTGTGAAATTATATAAAAAAATATAATTGAAAAAAATTTGTTAAAATAAATTATAAAataa                     >  2:2833396/1‑126 (MQ=255)
                                                                                                          ttGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTT‑‑‑‑TAATGTAAATATAAATTTTTGGTATTTTGTTGTAAAATTATCTAAAAAAATATAAAGGAAAAAATAATGTTAAAAGTAATAATAAAataatt                   >  1:6833576/1‑128 (MQ=255)
                                                                                                                 tGTAAAAAATAGC‑‑‑TTTTTTTTTTTATTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTa                 >  1:146288/1‑124 (MQ=255)
                                                                                                                   tAAAAAATAGCTTTTTTTTTTTTTTTTT‑‑‑TAATGGAAATATAATTTTTAGTTTTTTTGTTTTATAATTATCTAAAAAAAAAAAAATGAAAAAATATTGTTAAAAGTTATAATAAAATTATTTAATTtta           >  1:5646614/1‑128 (MQ=255)
                                                                                                                       aataatttttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaa          <  1:1005385/121‑1 (MQ=255)
                                                                                                                        atatattttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTATAAGTATCTAAAAAAATAGAAATGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaat         <  2:1059966/122‑1 (MQ=255)
                                                                                                                          taattttttttttttttttttttATAATGGAAATATAAATTTTAGTTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatta       <  2:1447329/124‑1 (MQ=255)
                                                                                                                          aaatattttttttttttttttttATAATGGAAATATAAATTTTATGTATTTTGTTGTATAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatta       <  1:3930466/123‑1 (MQ=255)
                                                                                                                          aaatattttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatta       <  2:3064170/123‑1 (MQ=255)
                                                                                                                               ttttttttttttttttttATAATGGAAAAATAAATTTTATGTATTTTTTTTTATAATTATAAAAAAAAATAAAAATGAAAAAAAATTTTTAAAATAAATAAAAAAATTATTTAATTtaaaataaaaat  >  1:2775536/1‑126 (MQ=255)
                                                                                                                               |                                                                                                                               
TAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACT  >  CP016816/165124‑165378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑