Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4850T.73.2% 469.7 / inf 448intergenic (+263/‑412)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base T (28/75);  new base . (120/162);  total (181/267)
Fisher's exact test for biased strand distribution p-value = 6.47e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.51e-02

Only 100 of 497 total aligned reads displayed.

GAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATA  >  CP016816/202357‑202606
                                                                                                                                     |                                                                                                                           
 aaGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATAACATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCt                                                                                                                             <  2:5537549/128‑1 (MQ=255)
  aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCtt                                                                                                                            <  1:2882142/128‑1 (MQ=255)
  aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCACtt                                                                                                                            >  1:5517191/1‑128 (MQ=255)
   gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTTTTTATCTTCACAAATAAAAAAAAAACAAACACCtaa                                                                                                                           >  1:841574/1‑126 (MQ=255)
   gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATATTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCACtaa                                                                                                                           >  2:6288051/1‑126 (MQ=255)
    ttattttAAAAAATATATTTAATTTTAATTAAAATTACATAAAATTTATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTGGTTTATATTAACAAATAAAAAAAAAACAATCCCCttaa                                                                                                                          <  1:4259025/122‑3 (MQ=255)
     tAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTAATCTTCACAAATAAAAAAAAAACAATCCCCttaaa                                                                                                                         >  1:7130488/1‑125 (MQ=255)
      aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCAttaaaa                                                                                                                        >  1:6998864/1‑124 (MQ=255)
         gtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCtaaaaaaat                                                                                                                     >  1:1738215/1‑120 (MQ=255)
             ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCACC‑‑Ttaaa‑‑aattaaaa                                                                                                             >  2:6122398/1‑128 (MQ=255)
              taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTCTTTATCTTCACAAATAAAAAAAAAACAAACCCC‑‑ttaaa‑‑aattaaaaa                                                                                                            >  1:6611572/1‑128 (MQ=255)
              taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTATTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑ttaaa‑‑aattaaaaa                                                                                                            >  2:5913687/1‑128 (MQ=255)
                 taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATTTTTATATTTGTTAATCTTCACAAAAAAAAAAAAAACAAT‑‑CCAATAAAA‑‑AAATaaaaaaaa                                                                                                         >  2:3629491/1‑128 (MQ=255)
                 taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAATAAAAAAAAAACAATCCAC‑‑TTAAA‑‑AATTaaaaaaat                                                                                                         >  1:3410534/1‑127 (MQ=255)
                 taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAATACCC‑‑TTAAA‑‑AATTaaaaaaaa                                                                                                         >  1:5440942/1‑128 (MQ=255)
                    tgttaatgttaatTAAAAATACATAAAATTAATAATTTTTTTAATTTTCTTCCTCGTGATCTATTTTTTTATTTTTTTATCTTAAAAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaa                                                                                                      <  1:5486431/127‑1 (MQ=255)
                    atttAATGTTAATTAAAAAACAAAAAAATTAAAAATTCATATAATTTATATCCACGTTATATATTTTTTTATTTGTTTATATTAAAAAAAAAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaa                                                                                                      <  2:669251/126‑1 (MQ=255)
                    agTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTATTTATTTTTTTATCTTCACAAATAAAAAAAAAACAATACCC‑‑TTAAA‑‑AATTaaaaaaaaaaa                                                                                                      >  1:914773/1‑128 (MQ=255)
                      ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTATATACTCAATATCTAATTTTATAAAAAAAAATCTTAAAAAAAAAAAAAAAAAAAATAAC‑‑‑AAAAA‑‑AAATaaaaaaaaaaaaaa                                                                                                   >  1:5119821/1‑128 (MQ=255)
                       tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaa                                                                                                  >  1:7028118/1‑128 (MQ=255)
                        aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCAAAAATAAAAAAAAAACAATACCATT‑‑‑AA‑‑AAATaaaaaaaaaaaaaaaa                                                                                                 >  2:787965/1‑128 (MQ=255)
                        aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATATTAAAAAATAAAAAAAAAAAAATCCAAATaaaaa‑‑aaaaaaaaaaaaaaaaa                                                                                                    >  1:3132969/1‑128 (MQ=255)
                        aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAACAATCCCC‑‑‑TAAA‑‑AAATtaaaaaaaaaaaaaaaa                                                                                                >  1:5813160/1‑128 (MQ=255)
                         aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCAGC‑‑TAAAA‑‑AAATaaaaaaaataaaataa                                                                                                 >  1:6124841/1‑128 (MQ=255)
                         aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaa                                                                                                 >  1:493354/1‑128 (MQ=255)
                         aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGTGATCTATTTTTTTATTAGTTTATCTACACAAATAAAAAAAAAACAATAACC‑‑TTAAA‑‑AAATaaaaaaaaaaaaaaaa                                                                                                 >  2:5991862/1‑128 (MQ=255)
                          ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATACCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaa                                                                                                >  1:769337/1‑128 (MQ=255)
                          ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAAACCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaa                                                                                                >  1:2465398/1‑128 (MQ=255)
                           gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATTTTTTTATTTTTTTATCTTAACAAATAAAAAAAAAAAAAT‑‑‑AAAATAAA‑‑AAATaaaaaaaaaaaaaaaaaaa                                                                                              >  1:2286/1‑128 (MQ=255)
                           gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAA‑‑AACAATTAAA‑‑AATTaaaaaaaaaaaaaaaaaa                                                                                               >  2:3541019/1‑128 (MQ=255)
                           gTTAATTAAAAAACCATAAAATTAATAATTATTATAATTTATATAATTGTTTTTTATTTTTTTATTTGTTTATATTAAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaaa                                                                                               <  2:6177513/128‑1 (MQ=255)
                            ttaaataaAAAAACATAAAATAAAAAAAAATTAAAATTTATAACCTACTTATATATTTTTTTATTTTTTTATATTAAAAAATAAAAAAAAAAAAAACCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaaaa                                                                                              <  2:3314831/128‑1 (MQ=255)
                             taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAATAAAAAAAAAACAATAAACAT‑‑‑AA‑‑AAATaaaaaaaaaaaaaaaaaaaaa                                                                                            >  1:2096177/1‑128 (MQ=255)
                              aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaaaaaa                                                                                            >  1:6195632/1‑128 (MQ=255)
                              aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCCATTAAAAA‑‑Taaaaaaaaaaaaaaaaaaaaaa                                                                                              >  2:2647560/1‑128 (MQ=255)
                              aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAAAAC‑‑‑ATAAA‑‑AAATaaaaaaaaaaaaaaaaaaaaaa                                                                                           >  2:6543912/1‑127 (MQ=255)
                              aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTATTATTTGTTTATCTTCAAAAATAAAAAAAAAACAATAAC‑‑ATAAAA‑‑AAATaaaaaaaaaaaaaaaaaaaaa                                                                                            >  2:2274444/1‑128 (MQ=255)
                              aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAAACCAC‑‑‑TAAA‑‑AAATtaaaaaaaaaaaaaaaaaaaa                                                                                            >  1:6469794/1‑128 (MQ=255)
                              aattaaAATACCATAAACTTAATAATTATTTAATGTAGATCATCTTTATCTATTTTTTTATTTTTTTATCTTCAAAAATAAAAAAAAAAAAAAACAC‑‑TAAAA‑‑AATTaaaaaaaaaaaaaaaaaaaaaa                                                                                           >  2:1916638/1‑127 (MQ=255)
                               attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCACC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaaaaaaa                                                                                           >  1:5734649/1‑127 (MQ=255)
                               attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTATTTATCTTCACAAATAAAAAAAAAACAAACC‑‑‑AATAAA‑‑AAATaaaaaaaaaaaaaaaaaaaaaaa                                                                                          >  1:1583326/1‑126 (MQ=255)
                                ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCATCACAAATAAAAAAAAAAAAA‑‑AACAATTAAA‑‑AATTaaaaaaaaaaaaaaaaaaaaaaa                                                                                          >  2:6490392/1‑126 (MQ=255)
                                ttaaAATACCATAAACTTAATAATTATTATAATCTAAATAAACTTGATCTATTTTTATATATATTTATATTCACAAATAAAAAAAAAAAAA‑‑AACAAATAAA‑‑AAATaaaaaaaaaaaaaaaaaaaaaaa                                                                                          >  1:2645524/1‑126 (MQ=255)
                                ttaaAAAAACATAAACTTAATAATTATTAATATTTATTTCCTCGTGATCTATTTTTTTTTTTTTTTATCTTAACAAAAAAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaaaaaaac                                                                                          <  2:4332857/128‑3 (MQ=255)
                                 taaaataaaataaaaTTAAAAAATAATAAAATGTTTATCCACGTGTTCTAATTTTTTTATTTTTTATCTTAACAAATAAAAAAAAAACAAACCCC‑‑ATAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTa                                                                                         <  2:6899295/128‑1 (MQ=255)
                                  aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                        >  1:3629082/1‑124 (MQ=255)
                                  aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCACTTAAAAA‑‑Taaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                          >  1:4120590/1‑126 (MQ=255)
                                  aaaaTACCATAAACTTAAAAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACACCATAAAAA‑‑Taaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                          >  1:4610886/1‑126 (MQ=255)
                                   aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑‑AAATaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                       >  1:6899141/1‑123 (MQ=255)
                                   aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAATACC‑‑ATTAAA‑‑AATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                       >  1:103862/1‑123 (MQ=255)
                                    aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAATAAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaaaaataaaaaa                                                                                      >  1:5696405/1‑121 (MQ=255)
                                      taaaaTAAAATTAAAAATTATTTTAATTTATATACTAGTTATATATTTTTTTATTTTTTTATATTAAAAAATAAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAaaac                                                                                    <  2:5651337/124‑1 (MQ=255)
                                      tACCAAAAAATTAAAAATTCTTATAATTTATATCCTTGGTATTTATTTTTTTATTTTTTTTTATTAAAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAaaac                                                                                    <  1:6262784/128‑1 (MQ=255)
                                       aCCATAAAATTAAAAATTATTTTAATGTTGATACGTTTTATTTATTTTTTTTTTTTTTTATTTTCACAAAAAAAAAAAAAAAAAACCCC‑‑TTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                   <  1:4020980/128‑1 (MQ=255)
                                        caaaaaaaTTAATAATATTTATAATTTATAATCACTTTTTATATTTTTTTTTTTGTTTATATTCAAAAATAAAAAAAAAAAAAAACCCTTAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                   <  2:6357242/124‑1 (MQ=255)
                                        aaaTAAAATTAATAATTATTATAATTTAATAAATTCTTATATATTTTTTTAATTTTTTAAATTAAAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                  <  2:2363935/126‑1 (MQ=255)
                                         caaaaaCTTAATAATTAATAAAATTTATAATCACGTTATATAATTTTTTATTTTTTTATATTAACAAAAAAAAAAAAAAACAAACCCCTTAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                   <  2:4438101/125‑1 (MQ=255)
                                           tAAAATTAATAATTTTTAAAATTTAGATCATCGTTATATATTTTTTTTTTTTTTTATCTTTAAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                             <  1:5956020/128‑1 (MQ=255)
                                             aaattAATTATTTATATAATTTACTTCATCGTTATATATTTTTTTTTTTGTTTATCTTAACAAAAAAAAAAAAAAAAATACCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                            <  1:5624151/125‑1 (MQ=255)
                                             aaCTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGATTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TAAAA‑‑AATTAAAAAAAAATAAACAAAAAAACAAACAAAAAActaa                                                                             >  1:6393316/1‑126 (MQ=255)
                                             aaCTTAATAATAAATAAAATTTATAACATCGTCATCTATTTTTTTAATTGTTTATCATCAAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                            <  2:1540460/128‑1 (MQ=255)
                                              aaataaaaaTTATTAAAATATAAATCCTAGTTTTTTATTTTTTAAATTTTTTAAAATAAAAAAAAAAAAAAAAAAAAACCC‑‑ATTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                            <  2:4173170/125‑1 (MQ=255)
                                                       ttattAAAATTTAGATCCTCGTTATATATTTTTTTATTTTTTTATATTAACAAAAAAAAAAAAAACAATCACCTTAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaa                                                                    <  2:403655/125‑1 (MQ=255)
                                                                  tttataatttttaTCTATTTTTTTATTTTTTTATATTAAAAAATAAAAAAAAAAAAATCCCCAT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                       <  2:50933/116‑1 (MQ=255)
                                                                     acctgcttctcttatttttttattttttTAATTAAAAAATAAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTCTTTCTTAAAATTCCCTATTATACca                                                   <  2:6840175/116‑1 (MQ=255)
                                                                     aaacacGTTATTTATTTTTTTATTTTTTTATATTAAAAAAAAAAAAAAAAAAAAACCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                    <  2:905702/123‑1 (MQ=255)
                                                                       actaattaTCTATTTATTTATTTTTTTATATTAAAAAAAAAAAAAAAAAAAAAACC‑‑ATTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                   <  2:1228483/121‑1 (MQ=255)
                                                                        cacttttaatATTTTTTTAATTTTTAATATTAAAAAAAAAAAAAAAAAAAAAACCCCATAAAAA‑‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                     <  2:3897685/119‑1 (MQ=255)
                                                                         cttttttatatttttttattttttTTATTTAAACAAAAAAAAAAAAAAAAATACCCTTT‑‑AA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                  <  1:3809433/120‑1 (MQ=255)
                                                                         ctattttttattttttttatttttttttattAAAAAAAAAAAAAAAAAAAAACCCATTAAAAA‑‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                    <  2:5426165/117‑1 (MQ=255)
                                                                         aattttaatattatTTTAATTTTTTTTATAAAAAAAAAAAAAAAAAAAAATCCCCTAAAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                  <  2:283227/120‑1 (MQ=19)
                                                                             ttttttttttttttATTTTTTATATTTAAAAAAAAAAAAAAAAAAAAACC‑‑ATTAAA‑‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                             <  2:4996227/121‑1 (MQ=255)
                                                                             tttatATTTTTTTTTTTTTTATTATATAAAAAAAAAAAAAAAAAAAAACCC‑‑ATAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                             <  2:548641/124‑1 (MQ=255)
                                                                              ttttattttttttatttttttaTTTTAAAAAATAAAAAAAAAAAAAACCCCATAAAA‑‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                              <  1:6095677/122‑1 (MQ=255)
                                                                              tatattttttttttttttttttttttAAAAAAATAAAAAAAAAAAATACACTTAAAA‑‑TATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                              <  1:5991862/122‑1 (MQ=255)
                                                                                tttaattttttttttttttATATTAAAAAAAAAAAAAAAAAAAAAAACCATAAAAA‑‑TAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                             <  1:6303828/123‑1 (MQ=255)
                                                                                   ttttttttatttttttttattAAAAAAAAAAAAAAAAAAAAAACACTTAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttattt                                         <  1:1916638/127‑1 (MQ=255)
                                                                                    ttttttttttttttTATAATTAAAAATAAAAAAAAAAAAATCCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                      <  2:2991353/128‑1 (MQ=255)
                                                                                    atttttaTTTTTTTTATAATAAAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                      <  2:1356920/127‑1 (MQ=255)
                                                                                     ttatttATTTTTTTAAAATAAAAAAAAAAAAAAAAAAAATACCATTAAAA‑‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                       <  2:7125456/125‑1 (MQ=255)
                                                                                       ttttttttttttATATTTAAAAATAATAAAAAAAAAAAAACATTAAAAA‑‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                      <  2:3120467/128‑1 (MQ=255)
                                                                                       ttttATTTTTTTATATTAAAAAATAAAAAAAAAAAAATACAC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                    <  2:2585224/128‑1 (MQ=255)
                                                                                       ttttAATTTTTTATAATAACAAAAAAAAAAAAAAAAATACCCATAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                     <  2:6084564/128‑1 (MQ=255)
                                                                                             ttttttTATATTAAAAAAAAAAAAAAAAAAAATCAC‑‑ATTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                               <  2:1465921/128‑1 (MQ=255)
                                                                                                  ttttttatttaaaaaTAAAAAAAAAAAAAAACCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                            <  2:2411851/116‑1 (MQ=255)
                                                                                                  atttttaataaaaaaTAAAAAAAAAAAAATACCATAT‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                            <  2:4834031/116‑1 (MQ=255)
                                                                                                    tatttttaaaaaaTAAAAAAAAAAAAATACC‑‑ATTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCACTATTATACCACATTTTATTTTTAAAATAAGATAtt                          <  2:5250119/118‑1 (MQ=255)
                                                                                                     aaatCAAAAAAAAAAAAAAAAAAAAACCCTTTAAAATTAAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGatat                           <  2:5825001/125‑1 (MQ=255)
                                                                                                      cTTCACAAATAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAATATATTTATTAAAATTACAAATTTAACCAAATTTTTTTTTTAAAAAAAAATATTGAAata                    >  2:6268826/1‑128 (MQ=255)
                                                                                                       aattaaaaaaaaaaaaaaaaaaaATACCC‑‑ATAAA‑‑AAATAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                      <  2:3435100/121‑1 (MQ=255)
                                                                                                        attaaaaaaaaaaaaaaaaaaaATACCATT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                    <  1:3548446/122‑1 (MQ=255)
                                                                                                          attaaaaaaaaaaaaaaaaaaaaaCCCATTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                      <  2:4512229/124‑1 (MQ=255)
                                                                                                           taaaaaaaaaaaaaaaaaaaaCCCC‑‑TTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataa                   <  2:1776429/125‑1 (MQ=255)
                                                                                                           aaaaaaaaaaaaaaaaaaaATCACCATAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                    <  2:7026761/125‑1 (MQ=255)
                                                                                                            aaaaaaaaaaaaaaaaaaaaaaCCCTTAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                    <  2:6435599/126‑1 (MQ=255)
                                                                                                             aaaaaaaaaaaaaaaaaATACC‑‑ATTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata                 <  1:6735849/127‑1 (MQ=255)
                                                                                                              aaaTAAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAAAAAAACCCAACAATTATTTATAAAAAATACAAAATTTACCAAAATTTATTTTTTAAATAATAAATTGACAAAatat                >  2:3757588/1‑128 (MQ=255)
                                                                                                                 aaaaaaaaaaaaCAATCCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata             <  2:2088807/126‑1 (MQ=255)
                                                                                                                         aaaaCAATCCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAA‑‑TAAAAACAAACGATTTTTATTAAAATTCCCTTTTTAACCACATTTATTTTTTAAAATAAGATTTTGAATAAaaatatataaaaattat   >  1:3711026/1‑119 (MQ=255)
                                                                                                                           aaCAATCCCCTTAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACAAAAAACAAACTATATTTATTAAAATAGCAATTTTAACCAAATTTTTTTTTTAAAATAATATATTGAAATAATTTATTTATAaaat     >  2:5731556/1‑128 (MQ=255)
                                                                                                                                     |                                                                                                                           
GAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATA  >  CP016816/202357‑202606

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: