Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4860T.55.4% 215.8 / inf 447intergenic (+264/‑411)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base T (34/128);  new base . (97/104);  total (180/267)
Fisher's exact test for biased strand distribution p-value = 6.11e-08
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.32e-04

Only 100 of 485 total aligned reads displayed.

AAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAA‑ACAATCCCCTTTTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATA  >  CP016816/202358‑202606
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   ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAA‑ACAATCCCAttaa                                                                                                                          >  1:5422940/1‑126 (MQ=255)
    tAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAA‑ACAAACCCCttaaa                                                                                                                         >  1:6513265/1‑125 (MQ=255)
    tAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTAATCTT‑CAC‑AAAT‑AAAAAAAAA‑ACAATCCCCttaaa                                                                                                                         >  1:7130488/1‑125 (MQ=255)
           aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CAA‑AAAT‑AAAAAAAAA‑ACAAAACCCttaaaaattaaa                                                                                                                  >  1:5524224/1‑118 (MQ=255)
           aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTAGTATATATT‑CAC‑AAAT‑AAAAAAAAA‑ACAAAACCCTAaaaaa‑‑aaaaa                                                                                                                >  1:4512229/1‑126 (MQ=255)
            ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAA‑ACAATCACC‑‑Ttaaa‑‑aattaaaa                                                                                                             >  2:6122398/1‑128 (MQ=255)
               ataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAAATCTTATAATGTAGATCCTCGTGATCA‑ATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAA‑AAAATACCCAT‑‑‑AA‑‑AAATaaaaaaaa                                                                                                         >  1:6954447/1‑128 (MQ=255)
                taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCT‑ATTTTTATATTTGTTAATCTT‑CAC‑AAAA‑AAAAAAAAA‑ACAAT‑‑CCAATAAAA‑‑AAATaaaaaaaa                                                                                                         >  2:3629491/1‑128 (MQ=255)
                taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAA‑ACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaa                                                                                                         >  1:5958517/1‑128 (MQ=255)
                   atttAATGTTAATTAAAAAACAAAAAAATTAAAAATTCATATAATTTATATCCACGTTATAT‑ATTTTTTTATTTGTTTATATT‑AAA‑AAAA‑AAAAAAAAA‑ACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaa                                                                                                      <  2:669251/126‑1 (MQ=255)
                   agTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAA‑ACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaa                                                                                                      >  1:6028140/1‑128 (MQ=255)
                     ttAAGGTTATTTAAAAAAACATAAAAATAATAAATTATATAATTTATATCCTCGTTTTCT‑ATTTTTTTATTTGTTTATATT‑CAC‑AAAA‑AAAAAAAAA‑ACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaa                                                                                                    <  1:570151/128‑1 (MQ=255)
                     ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAA‑ACAATCCCC‑‑TTAAA‑‑AAATaaaaaaaaaaaaa                                                                                                    >  1:5651337/1‑128 (MQ=255)
                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCT‑ATTTTTTTATTTTTTTATCTT‑CAA‑AAAT‑AAAAAAAAA‑ACAATACCATT‑‑‑AA‑‑AAATaaaaaaaaaaaaaaaa                                                                                                 >  2:787965/1‑128 (MQ=255)
                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCT‑ATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAA‑AAAATCCC‑‑‑ATAAA‑‑AAATtaaaaaaaaaaaaaaa                                                                                                 >  1:3646160/1‑128 (MQ=255)
                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAAA‑ACAATACC‑‑ATTAAA‑‑AATTaaaaaaaaaaaaaa                                                                                                   >  2:6264545/1‑128 (MQ=255)
                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAA‑ACAATCAC‑‑‑AAAAA‑‑AAATtaaaaaaaaaaaaaaa                                                                                                 >  1:3794437/1‑128 (MQ=255)
                        aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGTGATCT‑ATTTTTTTATTAGTTTATCTA‑CAC‑AAAT‑AAAAAAAAA‑ACAATAACC‑‑TTAAA‑‑AAATaaaaaaaaaaaaaaaa                                                                                                 >  2:5991862/1‑128 (MQ=255)
                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAA‑ACAATACCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaa                                                                                                >  1:769337/1‑128 (MQ=255)
                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAA‑ACAAACACC‑‑TTAAA‑‑AAATaaaaaaaaaaaaaaaaa                                                                                                >  1:1940937/1‑128 (MQ=255)
                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAA‑AAAA‑‑AACAAATAAA‑‑AAATaaaaaaaaaaaaaaaaa                                                                                                >  1:6630617/1‑128 (MQ=255)
                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATATGTTTATCTT‑CAC‑AAAT‑AAAAAAAAA‑AAAA‑‑AACAAATAAA‑‑AATTaaaaaaaaaaaaaaaaa                                                                                                >  1:4149796/1‑128 (MQ=255)
                         ggTTAATTAAAATACCATAAACTTAATAATTCTAATAATTTATATCCTCTATATCT‑ATAATATAATAATTATATCTT‑CAC‑AAAT‑AAAAAAAAA‑AAAAACCACTAaaaaa‑‑aaaaaaaaaaaaaaaaaaa                                                                                                  >  1:4882036/1‑128 (MQ=255)
                          gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTTTTTATCTT‑CAC‑AAAT‑AAAAAAAAA‑AAAATAACC‑‑TAAAA‑‑AAATaaaaaaaaaaaaaaaaaa                                                                                               >  1:2405141/1‑128 (MQ=255)
                          gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAA‑AAAA‑‑AACAATTAAA‑‑AATTaaaaaaaaaaaaaaaaaa                                                                                               >  2:3541019/1‑128 (MQ=255)
                          gTTAATTAAAAAACCATAAAATTAATAATTATTATAATTTATATAATTGTTTTTT‑ATTTTTTTATTTGTTTATATT‑AAA‑AAAA‑AAAAAAAAA‑AAAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaaa                                                                                               <  2:6177513/128‑1 (MQ=255)
                           ttaattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTTATCT‑ATTTTTTTATTTATTTATCTT‑CAC‑AAAT‑AAAAAAAAA‑AAAAT‑‑ACAATTAAA‑‑AAATaaaaaaaaaaaaaaaaaaa                                                                                              >  1:2934717/1‑128 (MQ=255)
                           ttaattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTTTTTATCTT‑CAC‑AAAT‑AAAAAAAAA‑AAAAAACAC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaaaa                                                                                              >  2:1578281/1‑128 (MQ=255)
                            taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAACCCAATCCCC‑‑GTAAA‑‑AATTaaaaaaaaaaaaaaaaaaa                                                                                              >  1:6414004/1‑128 (MQ=255)
                            taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTCTTTATCTT‑CAC‑AAAT‑AAAAAAAAA‑ACAATCAAC‑‑‑TAAA‑‑AAATtaaaaaaaaaaaaaaaaaaaa                                                                                            >  1:2577446/1‑128 (MQ=255)
                             aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAA‑ACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaaaaaa                                                                                            >  2:5526332/1‑128 (MQ=255)
                             aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAA‑ACAAACCCATTAAAAA‑‑Taaaaaaaaaaaaaaaaaaaaaa                                                                                              >  2:2647560/1‑128 (MQ=255)
                             aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAA‑ACAAAAAC‑‑‑ATAAA‑‑AAATaaaaaaaaaaaaaaaaaaaaaa                                                                                           >  2:6543912/1‑127 (MQ=255)
                              attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTATTTATCTT‑CAC‑AAAT‑AAAAAAAAA‑ACAAACC‑‑‑AATAAA‑‑AAATaaaaaaaaaaaaaaaaaaaaaaa                                                                                          >  1:1583326/1‑126 (MQ=255)
                              attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTAATTT‑TTTATAAT‑CAC‑AAAA‑AAAAAAAAA‑ACAAAACCC‑‑AAAAA‑‑AAATaaaaaaaaaaaaaaaaaaaaaaa                                                                                          >  1:5497160/1‑126 (MQ=255)
                              attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCAAGATCA‑ATATATTTATTAATAAATATT‑CAA‑AAAT‑AAAAAAAAA‑‑‑AATAAACTTAAAAA‑‑Taaaaaaaaaaaaaaaaaaaaaaaaa                                                                                           >  1:4060915/1‑127 (MQ=255)
                               ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTTTTTATCAT‑CAC‑AAAT‑AAAAAAAAA‑AAAA‑‑AACAATTAAA‑‑AATTaaaaaaaaaaaaaaaaaaaaaaa                                                                                          >  2:6490392/1‑126 (MQ=255)
                               ttaaAATACCATAAACTTAATAATTCTTATAATGTAAATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAA‑ACAAACCC‑‑AAAAAA‑‑AATTaaaaaaaaaaaaaaaaaaaaaaa                                                                                          >  1:1776632/1‑126 (MQ=255)
                               ttaaAAAAACATAAACTTAATAATTATTAATATTTATTTCCTCGTGATCT‑ATTTTTTTTTTTTTTTATCTT‑AAC‑AAAA‑AAAAAAAAA‑ACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaaaaaaac                                                                                          <  2:4332857/128‑3 (MQ=255)
                                taaaataaaataaaaTTAAAAAATAATAAAATGTTTATCCACGTGTTCTAATTTTTTTATTT‑TTTATCTT‑AAC‑AAAT‑AAAAAAAAA‑ACAAACCCC‑‑ATAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTa                                                                                         <  2:6899295/128‑1 (MQ=255)
                                taaAATACAATAAAAATAATAATTATTATAATTTAAATCCTATTGATAT‑ATTTTTTTATTTTTTTATAAT‑AAA‑AAAA‑AAAAAAAAA‑ACAAACCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTaa                                                                                        <  2:1262532/128‑1 (MQ=255)
                                 aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAA‑ACAAACCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                        >  1:3848527/1‑124 (MQ=255)
                                  aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAA‑AAAATACC‑‑ATTAAA‑‑AATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                       >  1:103862/1‑123 (MQ=255)
                                  aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTAATTATCTT‑CAC‑AAAT‑AAAAAAAAA‑ACAATCCCCATAAAAA‑‑TAAAacaaaaaaaaaaaaaaaaaaaaat                                                                                         >  1:2126546/1‑125 (MQ=255)
                                  aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTAGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAA‑ACAATCACC‑‑TTAAA‑‑AAATaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                       >  1:3151882/1‑123 (MQ=255)
                                   aaaacactAAACTTAATAATTAGTATTATTGTGAATCTCTTGTTTT‑TTTTTTTTTTTTTTTTATTTT‑CAA‑AAAT‑AAAAAAAAA‑AAAAAACCC‑‑TAAAA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTaaaa                                                                                      <  1:6791660/121‑1 (MQ=255)
                                   aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAA‑ACAAACCC‑‑AATAAA‑‑AATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                      >  1:3455672/1‑128 (MQ=255)
                                     tacaaaaaaCTTTAAAATTATTAAAAAGTATTACCACGTGTTCT‑ATTTTTTTATTTTTTTATAAT‑TCC‑AAAA‑AAAAAAAAA‑AAAAACCCC‑‑TTAAA‑‑AAAT‑‑AAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                  <  1:6225161/122‑1 (MQ=255)
                                     taaaaTAAAATTAAAAATTATTTTAATTTATATACTAGTTATAT‑ATTTTTTTATTTTTTTATATT‑AAA‑AAAT‑AAAAAAAAA‑AAAATCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAaaac                                                                                    <  2:5651337/124‑1 (MQ=255)
                                       caaaaaaaTTAATAATATTTATAATTTATAATCACTTTTTAT‑ATTTTTTTTTTTGTTTATATT‑CAA‑AAAT‑AAAAAAAAA‑AAAAAACCC‑TTAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                   <  2:6357242/124‑1 (MQ=255)
                                       aaaTAAAATTAATAATTATTATAATTTAATAAATTCTTATAT‑ATTTTTTTAATTTTTTAAATT‑AAA‑AAAA‑AAAAAAAAA‑AAAAACCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                  <  2:2363935/126‑1 (MQ=255)
                                        caaaaaCTTAATAATTAATAAAATTTATAATCACGTTATAT‑AATTTTTTATTTTTTTATATT‑AACAAAAA‑AAAAAAAAA‑ACAAACCCC‑TTAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                   <  2:4438101/125‑1 (MQ=255)
                                        cATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAA‑ACAATCCCCTTAAAAA‑‑TTAAAAAAAAAAAAAAAAAAAAAAAATaaaaaaa                                                                                   >  1:6095680/1‑126 (MQ=255)
                                        cATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATATT‑AAC‑AAAT‑AAAAAAAAA‑ACAAT‑CCCATTAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTaaaaaaaa                                                                                  >  2:1468544/1‑128 (MQ=255)
                                             aaataaaaaTTATTAAAATATAAATCCTAGTTTTTT‑ATTTTTTAAATTTTTTAAAAT‑AAA‑AAAA‑AAAAAAAAA‑AAAAACCC‑‑ATTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                            <  2:4173170/125‑1 (MQ=255)
                                             aCTAAATAATTATTATAATTTTTTACCTCGTTTTAT‑ATTTTTTTTTTTTTTTTAATT‑AAA‑AAAT‑AAAAAAAAA‑ACAAACCCC‑‑TTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                            <  1:5783201/128‑1 (MQ=255)
                                                  ataatTATTATAATTTTTATACTCATTATAT‑ATTTTTTTATTTTTTTAACTT‑AAA‑AAAT‑AAAAAAAAA‑AAAAACCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCt                                                                       <  2:1063118/128‑1 (MQ=255)
                                                      ttattAAAATTTAGATCCTCGTTATAT‑ATTTTTTTATTTTTTTATATT‑AAC‑AAAA‑AAAAAAAAA‑ACAATCACC‑TTAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaa                                                                    <  2:403655/125‑1 (MQ=255)
                                                                 tatttCCTCGTTTTAT‑ATTTTTTTATTTTTTTATATT‑CA‑‑AAAA‑AAAAAAAAA‑AAAATACCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                       <  2:5481540/124‑1 (MQ=255)
                                                                   tatacTCGTTATAT‑ATTTTTTTATTTTTTTATATT‑AAA‑AAAA‑AAAAAAAAA‑AAAAACCCC‑TTAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                       <  1:857109/124‑1 (MQ=255)
                                                                    atttttttttttt‑ATTTTTTTTTTTTTTTTTATT‑AAA‑AATT‑TAAAAAAAA‑ATAAT‑TTCTTTT‑AA‑‑AATTTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                     <  1:2647560/116‑1 (MQ=255)
                                                                    aaacacGTTATTT‑ATTTTTTTATTTTTTTATATT‑AAA‑AAAA‑AAAAAAAAA‑AAAAACCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                    <  2:905702/123‑1 (MQ=255)
                                                                       tatttttatt‑atttttttattt‑tttATCAT‑AAA‑AAAT‑AAAAAAAAA‑AAAAACCCCTTAAAAA‑‑ATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                   <  2:6282886/119‑1 (MQ=255)
                                                                       cacttttaat‑ATTTTTTTAATTTTTAATATTAAAA‑AAAA‑AAAAAAAAA‑AAAAACCCCATAAAAA‑‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                     <  2:3897685/119‑1 (MQ=255)
                                                                        aattttaat‑attatTTTAATTTTTTTTATA‑AAA‑AAAA‑AAAAAAAAA‑AAAATCCCC‑TAAAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                  <  2:283227/120‑1 (MQ=19)
                                                                         tgtttaatttttttttttttttttttTATT‑AAC‑AAA‑‑AAAAAAAAA‑AAAATTCCCTTT‑‑‑A‑‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                              <  2:179020/118‑1 (MQ=255)
                                                                            ttttttttttttttATTT‑TTTATATT‑TAA‑AAAA‑AAAAAAAAA‑AAAAAACC‑‑ATTAAA‑‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                             <  2:4996227/121‑1 (MQ=255)
                                                                             ttttaaTTTTTTTTTTTTTTTAAATT‑AAA‑AAAT‑AAAAAAAAA‑AAAATACCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                             <  2:5912438/123‑1 (MQ=255)
                                                                             attt‑atttttttattttttTATTTA‑AAT‑AAAA‑AAAAAAAAA‑AAAA‑‑ATCAAATAAA‑‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttat                                           <  2:5411312/125‑1 (MQ=255)
                                                                             aatt‑ATTTTTTTTTTTTTTTATATA‑AAA‑AAAA‑AAAAAAAAA‑AAAAAACCATTAAAAA‑‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                              <  1:6167981/125‑1 (MQ=255)
                                                                                aatatattatATTTTTTTATATT‑AAA‑AAAA‑AAAAAAAAA‑AAAA‑‑AACATTTAAA‑‑AA‑‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                        <  2:2092943/119‑1 (MQ=255)
                                                                                  aTTTTTTTAATTTTTTATATT‑AAA‑AAAA‑AAAAAAAAA‑AAAAACCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                       <  2:2310063/128‑1 (MQ=255)
                                                                                   tttttttttttttttttttt‑TA‑‑AAAT‑AATAAAAAA‑AAAAAATCCAATTTAA‑‑AATTATAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                        <  1:3552066/128‑1 (MQ=19)
                                                                                   ttttttttttttttTATAAT‑TAA‑AAAT‑AAAAAAAAA‑AAAATCCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                      <  2:2991353/128‑1 (MQ=255)
                                                                                   tttttatATTT‑TTTATCTT‑CAC‑AAAA‑AAAAAAAAA‑AAAATAAC‑‑ATTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                      <  2:5059144/128‑1 (MQ=255)
                                                                                    ttttttttttttttATTTT‑AAA‑AAAA‑AAAAAAAAA‑AAAAACCCCAT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                     <  1:4961623/128‑1 (MQ=255)
                                                                                    ttttttttttttttATATT‑‑AA‑AAAA‑AAAAAAAAA‑AAAAAAACCATTAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                       <  1:7029607/128‑1 (MQ=255)
                                                                                    ttatttATTTTTTTAAAAT‑AAA‑AAAA‑AAAAAAAAA‑AAAAT‑ACCATTAAAA‑‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                       <  2:7125456/125‑1 (MQ=255)
                                                                                      ttttttttttttATATT‑TAA‑AAAT‑AATAAAAAA‑AAAAAAACATTAAAAA‑‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                      <  2:3120467/128‑1 (MQ=255)
                                                                                      ttttATTTTTTTTTATT‑AAA‑AAAA‑AAAAAAAAA‑AAAAAACCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                    <  1:6288051/128‑1 (MQ=255)
                                                                                      ttttATTTTTTTATATT‑AAA‑AAAT‑AAAAAAAAA‑AAAATACAC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                    <  2:2585224/128‑1 (MQ=255)
                                                                                      ttttATTTTTTTATATT‑AAA‑AAAA‑AAAAAAAAA‑AAAAAACCC‑‑ATAAA‑‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                    <  2:1384527/128‑1 (MQ=255)
                                                                                      ttttAATTTTTTATAAT‑AAC‑AAAA‑AAAAAAAAA‑AAAATACCC‑ATAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                     <  2:6084564/128‑1 (MQ=255)
                                                                                          aTTTTTTTTTATT‑AAA‑AAAT‑AAAAAATAA‑ACAATACC‑‑TTT‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                               <  1:5457284/128‑1 (MQ=255)
                                                                                           tttGTTTATCAT‑AAA‑AAAT‑AAAAAAAAA‑ACAATACCC‑‑TTAAA‑‑AATTTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                               <  2:6812364/128‑1 (MQ=255)
                                                                                               tttATCTT‑CAC‑AAAT‑AAAAAAAAA‑ACAATCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAACTCTTTTATTTAAAATAACAAATTATACAAAATTTTATTTTTAAAATaataatt                           >  1:6374040/1‑123 (MQ=255)
                                                                                                ttttttatttaaaaaT‑AAAAAAAAA‑AAAAAACCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                            <  2:2411851/116‑1 (MQ=255)
                                                                                                atttttaataaaaaaT‑AAAAAAAAA‑AAAATACCATAT‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                            <  2:4834031/116‑1 (MQ=255)
                                                                                                  ttttttttaaaaaT‑AAAAAAAAA‑AAATTTACCTTT‑‑AA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                          <  2:5202247/118‑1 (MQ=255)
                                                                                                     aattaaaaaaa‑aaaaaaaaa‑aaaATACCC‑‑ATAAA‑‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                      <  2:3435100/121‑1 (MQ=255)
                                                                                                        attaaaaa‑aaaaaaaaa‑aaaaaaaCCCATTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                      <  2:4512229/124‑1 (MQ=255)
                                                                                                         aaaaaaa‑aaaaaaaaa‑aaaATCACC‑ATAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                    <  2:7026761/125‑1 (MQ=255)
                                                                                                         aaaaaaT‑AAAAAAAAA‑AAAAACCCC‑‑ATAAA‑‑AAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata                 <  2:192180/125‑1 (MQ=255)
                                                                                                          aaaaaa‑aaaaaaaaa‑aaaaaaaCCCTTAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                    <  2:6435599/126‑1 (MQ=255)
                                                                                                          aaaaaa‑aaaaaaaaa‑aaaaaaaACCTTAAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                    <  2:582233/126‑1 (MQ=255)
                                                                                                            aaaT‑AAAAAAAAA‑ACAATCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAAAAAAACCCAACAATTATTTATAAAAAATACAAAATTTACCAAAATTTATTTTTTAAATAATAAATTGACAAAatat                >  2:3757588/1‑128 (MQ=255)
                                                                                                             aaT‑AAAAAAAAA‑AAAATCACC‑‑TTAAA‑‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata               <  1:5819066/128‑1 (MQ=255)
                                                                                                             aaT‑AAAAAAAAA‑A‑AATACCCTT‑‑‑AA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata             <  1:7015456/128‑1 (MQ=255)
                                                                                                                      aaaa‑aCAAAACCCTTAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc           <  2:329239/128‑1 (MQ=255)
                                                                                                                         a‑aCAATCCCC‑TTAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACAAAAAACAAACTATATTTATTAAAATAGCAATTTTAACCAAATTTTTTTTTTAAAATAATATATTGAAATAATTTATTTATAaaat     >  2:5731556/1‑128 (MQ=255)
                                                                                                                                     |                                                                                                                          
AAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAA‑ACAATCCCCTTTTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATA  >  CP016816/202358‑202606

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑