Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4940AT55.0% 7.7 / inf 441intergenic (+272/‑403)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base A (70/128);  new base T (96/146);  total (166/275)
Fisher's exact test for biased strand distribution p-value = 3.75e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.61e-03

Only 100 of 530 total aligned reads displayed.

AATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCA‑CATTTTATTTTTAAAATAAGATATTG‑ACATAATATATATCTAATATATATAATACTATATTGCT  >  CP016816/202369‑202621
                                                                                                                                   |                                                                                                                                 
 ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCACC‑‑Ttaaa‑‑aattaaaa                                                                                                                              >  2:6122398/1‑128 (MQ=255)
   aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAATaaaaaaa                                                                                                                           >  1:6730968/1‑128 (MQ=255)
   aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCACC‑‑Ttaaa‑‑aattaaaaaa                                                                                                                            >  1:5807475/1‑128 (MQ=255)
    ataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑‑AAAAAAAAACAAAACC‑‑ATTAAA‑‑AATTaaaaaaaa                                                                                                                          >  1:3293296/1‑128 (MQ=255)
     taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaa                                                                                                                          >  1:700466/1‑128 (MQ=255)
     taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAA‑AATCCCC‑‑TTAAA‑‑AATTaaaaaaaaa                                                                                                                         >  1:7221197/1‑128 (MQ=255)
     taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTATTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaa                                                                                                                          >  2:2464955/1‑128 (MQ=255)
      agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTATATCCTCGTGATCT‑ATTTTATTATATGTATATCTT‑CACAAAT‑AAAAAAAAAAAAATCACC‑‑‑TAAA‑‑AAATtaaaaaaaaa                                                                                                                        >  2:2967843/1‑128 (MQ=255)
        atttAATGTTAATTAAAAAACAAAAAAATTAAAAATTCATAT‑AATTTATATCCACGTTATAT‑ATTTTTTTATTTGTTTATATT‑AAAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaa                                                                                                                       <  2:669251/126‑1 (MQ=255)
        agTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaa                                                                                                                       >  1:6028140/1‑128 (MQ=255)
          ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AAATaaaaaaaaaaaaa                                                                                                                     >  1:5651337/1‑128 (MQ=255)
          ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGAGATCT‑ATTTTTTTATTTTTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCAC‑‑‑ATAAA‑‑AAATtaaaaaaaaaaaaa                                                                                                                    >  2:6332387/1‑128 (MQ=255)
           tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAAACAATCAACTAaaaaa‑‑aaaaaaaaaaaaaaa                                                                                                                       >  2:790719/1‑128 (MQ=255)
           tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCAC‑‑TAAAA‑‑AAATaaaaaaaaaaaaaa                                                                                                                    >  2:6500030/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCTTGATCT‑ATTATTTTATTTATTTATATT‑CACAAAT‑AAAAAAAAAAAAAT‑‑CCAAATAAA‑‑AATTaaaaaaaaaaaaaaa                                                                                                                   >  1:432952/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTTATCT‑AATTTATTATATGTAAATCTT‑CACAAAT‑AAAAAAAAAACAAAAAAC‑‑AAAAA‑‑AAATaaaaaaaaaaaaaaa                                                                                                                   >  1:4940861/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaa                                                                                                                   >  2:5727149/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑‑AAAAAAAAACAAACCAC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaa                                                                                                                  >  2:1674651/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTAAATATATTTTTATCTT‑CACAAAA‑AAAAAAAAAAAAATAAAAAT‑‑‑AA‑‑AAATaaaaaaaaaaaaaaaa                                                                                                                  >  1:4101989/1‑128 (MQ=255)
             aGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTATATCCTCTTTATCT‑ATTTTATTATTTGTATATATT‑CACAAAT‑AAAAAAAAAAAAAACAC‑‑‑ATAAA‑‑AAATaaaaaaaaaaaaaaaaa                                                                                                                 >  2:4566314/1‑128 (MQ=255)
              tgtaaaataaAAAAACAAAAAATTAAAAAATATAAT‑AATTTATAAACTCGTGATAT‑ATTTTTTTATTTTTTAAACAT‑AACAAAA‑AAAAAAAAAAAAATCCCCTTT‑‑AA‑‑AATTaaaaaaaaaaaaaaaaa                                                                                                                 <  2:2189336/121‑1 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCTTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAAAAA‑‑AACAATAAAA‑‑AAATaaaaaaaaaaaaaaaaa                                                                                                                 >  1:6604184/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaa                                                                                                                 >  2:5651291/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAAACACC‑‑TTAAA‑‑AAATaaaaaaaaaaaaaaaaa                                                                                                                 >  1:1940937/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑AATATTTAATTTGTTTATCTT‑CACAAAA‑AAAAAAAAAACAAACCCCTAaaaaa‑‑aaaaaaaaaaaaaaaaaaa                                                                                                                   >  1:2994449/1‑128 (MQ=255)
               gTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTTTTTATCTT‑CACAAAT‑AAAAAAAAAAAAATAACC‑‑TAAAA‑‑AAATaaaaaaaaaaaaaaaaaa                                                                                                                >  1:2405141/1‑128 (MQ=255)
                 taattaaAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTCTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCAAC‑‑‑TAAA‑‑AAATtaaaaaaaaaaaaaaaaaaaa                                                                                                             >  1:2577446/1‑128 (MQ=255)
                 taattaaAATACCATAAAATTAATAATTCTTAT‑AATGTAGATCATATTTATCT‑ATTTTTTTATTTTTTTATATT‑AAAAAAT‑AAAAAAAAAAAAAAAAAC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaaaaa                                                                                                              >  2:2674813/1‑128 (MQ=255)
                  aattaaAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCCTTAAAAA‑‑Taaaaaaaaaaaaaaaaaaaaaa                                                                                                               >  1:6910492/1‑128 (MQ=255)
                  aattaaAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaaaaaa                                                                                                             >  1:3678447/1‑128 (MQ=255)
                  aattaaAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAAACACAATAAAAA‑‑Taaaaaaaaaaaaaaaaaaaaaa                                                                                                               >  1:1599124/1‑128 (MQ=255)
                  aattaaAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAAAAAC‑‑‑ATAAA‑‑AAATaaaaaaaaaaaaaaaaaaaaaa                                                                                                            >  2:6543912/1‑127 (MQ=255)
                    ttaaAATACCATAAACTTAATAATTCTTAT‑AATGTAAATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAAACCC‑‑AAAAAA‑‑AATTaaaaaaaaaaaaaaaaaaaaaaa                                                                                                           >  1:1776632/1‑126 (MQ=255)
                     taaaataaaataaaaTTAAAAAATAATAA‑AATGTTTATCCACGTGTTCTAATTTTTTTATTT‑TTTATCTT‑AACAAAT‑AAAAAAAAAACAAACCCC‑‑ATAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTa                                                                                                          <  2:6899295/128‑1 (MQ=255)
                     taaAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAAACCAC‑‑TAAAA‑‑AATTaaaaaaaaaaaaaaaaaaaaaaat                                                                                                          >  1:7124475/1‑125 (MQ=255)
                     taaAATACAATAAAAATAATAATTATTAT‑AATTTAAATCCTATTGATAT‑ATTTTTTTATTTTTTTATAAT‑AAAAAAA‑AAAAAAAAAACAAACCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTaa                                                                                                         <  2:1262532/128‑1 (MQ=255)
                       aaaTACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAAAAATACC‑‑ATTAAA‑‑AATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                        >  1:103862/1‑123 (MQ=255)
                       aaaTACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCAT‑CACAAAT‑AAAAAAAAAACAATCCCCTTAAAAA‑‑Taaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                          >  1:3795817/1‑125 (MQ=255)
                       aaaTACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTAATTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCCATAAAAA‑‑TAAAacaaaaaaaaaaaaaaaaaaaaat                                                                                                          >  1:2126546/1‑125 (MQ=255)
                       aaaTAACATAAAAATAATAAATATTAA‑AAATTATAAACTCTTTTTCT‑ATTTTTTTATTTTTTTAAATT‑AAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaaaactaaaaa                                                                                                        <  2:6195632/128‑8 (MQ=255)
                        aaTACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTTTTTATCTT‑CACAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaaaaataaaaaa                                                                                                       >  1:5696405/1‑121 (MQ=255)
                        aaTACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAA‑‑AATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                       >  2:5522187/1‑128 (MQ=255)
                          tataaataatataataaTTATTAT‑ATTTTATATAATAGTTATAT‑ATTTTTATATTTTTTTATCTT‑AAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAaaac                                                                                                     <  2:2585424/117‑1 (MQ=255)
                          tacaaaaaaCTTTAAAATTATTAA‑AAAGTATTACCACGTGTTCT‑ATTTTTTTATTTTTTTATAAT‑TCCAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑‑AAAT‑‑AAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                                   <  1:6225161/122‑1 (MQ=255)
                               tAAAATTAATAATTTTTAA‑AATTTAGATCATCGTTATAT‑ATTTTTTTTTTTTTTTATCTT‑TAAAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                                              <  1:5956020/128‑1 (MQ=255)
                                  aattAATAATTCATAT‑AATTTATATACTAGTTATAT‑TTTTTTTTATTTTTTTATATT‑AAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                             <  2:6375649/126‑1 (MQ=255)
                                  aattAATAAATATTAT‑AATTTATATACTCGTGATAA‑ATTTTTTTATTTTTTTATATT‑AAAAAAA‑AAAAAAAAAAAAATCCCC‑‑ATAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                             <  2:235503/126‑1 (MQ=255)
                                  aataaataatTCTTAT‑AAAAAATATCCTACTTATCT‑ATATTTTTAATTTTTTATATT‑AAAAAAA‑AAAAAAAAAAAAAACCCC‑‑ATAAA‑‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                             <  2:1991628/124‑1 (MQ=255)
                                  aaataataaTTTTTATAAATTTATA‑CCTCTTTATAT‑ATTTTTTTAATTTTTTAAAAT‑AAAAAAA‑AAAAAAAAAAAAAAACCCTTT‑‑AA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                             <  2:4940861/125‑1 (MQ=255)
                                    taattaatTGTTAA‑AATTTTTATCCTAGTTATTA‑ATTTTTTTATTTTTTTATATT‑CAAAAAA‑AAAAAAAAAACAATCCCCTTAAAAA‑‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                             <  2:4406963/124‑1 (MQ=255)
                                      aataaataTTAT‑AATGTATATAATAGTTATAT‑ATTTTTTTATTTTTTTAAATT‑AAAAAAA‑AAAAAAAAAACAAACCCC‑‑TTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                                                         <  2:1856853/128‑1 (MQ=255)
                                                       tttataatttttaTCT‑ATTTTTTTATTTTTTTATATT‑AAAAAAT‑AAAAAAAAAAAAATCCCCAT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                                        <  2:50933/116‑1 (MQ=255)
                                                          acctgcttctctt‑atttttttattttttTA‑ATT‑AAAAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTCTTTCTTAAAATTCCCTATTATACca                                                                    <  2:6840175/116‑1 (MQ=255)
                                                          aaactactGATCT‑ATTTTTTTATTTTTTTATATT‑CACAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                                      <  2:3267844/121‑1 (MQ=255)
                                                          aaacacGTTATTT‑ATTTTTTTATTTTTTTATATT‑AAAAAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                                     <  2:905702/123‑1 (MQ=255)
                                                           acctagtttttt‑atttttttattttttTATATT‑AAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                                     <  2:5958517/117‑1 (MQ=255)
                                                             cacttttaat‑ATTTTTTTAATTTTTAATATTAAAAAAAA‑AAAAAAAAAAAAAACCCCATAAAAA‑‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                                      <  2:3897685/119‑1 (MQ=255)
                                                               ttgtgttatttttttttATTTGTTTTAATT‑AAAAAAA‑AAAAAAAAAAAAAAACC‑‑ATAAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca‑ca                                                                 <  1:4742547/118‑1 (MQ=255)
                                                               atttttat‑ATTTTTTTAATTTTTTATATT‑AAAAAAA‑AAAAAAAAAAAAATACCCATAAAAA‑‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca‑c                                                                  <  2:627366/121‑1 (MQ=255)
                                                                tttatttatttttttttttttttTAT‑TT‑AAAAAAT‑AAAAAAAAAAAAATATCC‑‑TTAAA‑‑AATTTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCA‑Catt                                                               <  2:3369080/119‑1 (MQ=255)
                                                                  tttat‑ATTTTTTTTTTTTTTATTATA‑TAAAAAA‑AAAAAAAAAAAAAAACCC‑‑ATAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCA‑Catttt                                                             <  2:548641/124‑1 (MQ=255)
                                                                  ttataaatttatttAATTTTTTATATA‑AAAAAAT‑AAAAAAAAAAAAAAAACC‑‑ATAAA‑‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCA‑Cattt                                                              <  2:1498831/122‑1 (MQ=255)
                                                                   ttttattttttttatttttttaTTTT‑AAAAAAT‑AAAAAAAAAAAAAACCCC‑ATAAAA‑‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCA‑Cattt                                                              <  1:6095677/122‑1 (MQ=255)
                                                                   tattattttttttATTT‑TATATATT‑AAAAAAT‑AAAAAAAAAAAAAAACAC‑ATTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCA‑Catttt                                                             <  2:4052522/122‑1 (MQ=255)
                                                                   attt‑atttttttattttttTATTTA‑AATAAAA‑AAAAAAAAAAAAA‑‑ATCAAATAAA‑‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCA‑Cattttat                                                           <  2:5411312/125‑1 (MQ=255)
                                                                    tacaatttttttatttttttAT‑AT‑AACAAAA‑ATAAAAAAAAAAATCCCC‑TTAAAA‑‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATCATACCA‑Catttta                                                            <  1:5488902/124‑1 (MQ=255)
                                                                      t‑atttttttattttttTATTTT‑AAAAAAA‑AAAAAAAAAACAATACCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCA‑Cattttatttt                                                        <  2:3494883/128‑1 (MQ=255)
                                                                       tttttttttatttttttaTATA‑AAAAAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCA‑Cattttatttt                                                        <  2:4858293/126‑1 (MQ=255)
                                                                       atattttttATTTTTTTTAATT‑AAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCA‑Cattttattt                                                         <  2:449336/125‑1 (MQ=255)
                                                                         tttttttatttttttaTATT‑AAAAAAA‑AAAAAAAAAAAAATAACATT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCA‑CATTTTATTTTTa                                                      <  1:3552116/128‑1 (MQ=255)
                                                                         tttttttatttttttaT‑AA‑AAAAAAA‑AAAAAAAAAAAAAACCCCTAAAAAA‑‑TAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCA‑Cattttatttt                                                        <  2:1409502/128‑1 (MQ=255)
                                                                          ttttttttttttttATATT‑‑AAAAAA‑AAAAAAAAAAAAAAAACCATTAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCA‑CATTTTAttttt                                                       <  1:7029607/128‑1 (MQ=255)
                                                                           tttttATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAA‑TAAAAAAAAACTAAATTT‑TTAAAAATAACAATTTTACCA‑CAATttttttttttata                                                  >  1:6293625/1‑123 (MQ=255)
                                                                            ttttATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAA‑TAAAAAAAAACCCAATTTATTAAAATTCACTATTATACCA‑CATTTTATTTTTaaaaa                                                  >  1:6166478/1‑127 (MQ=255)
                                                                            ttttAATTTTTTATAAT‑AACAAAA‑AAAAAAAAAAAAATACCC‑ATAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCA‑CATTTTATTTTTaa                                                     <  2:6084564/128‑1 (MQ=255)
                                                                             tttatttttttatttt‑AAAAAAT‑AAAAAAAAAAAAATAAACTTT‑‑‑A‑‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCA‑CATTTTATTTTTAAAATa                                                 <  1:2686375/128‑1 (MQ=255)
                                                                                aTTTTTTTATATT‑AAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCA‑CATTTTATTTTTAAAATaa                                                <  2:2405737/128‑1 (MQ=255)
                                                                                       ttttttttaaaaaT‑AAAAAAAAAAAATTTACCTTT‑‑AA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCA‑CATTTTATTTTTAAAATAAGATAtt                                          <  2:5202247/118‑1 (MQ=255)
                                                                                         tatattaaaaaT‑AAAAAAAAAAAAAAAACCTTTAAAATTTAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCA‑CATTTTATTTTTAAAATAAGata                                            <  2:6463775/120‑1 (MQ=255)
                                                                                              aaaaaaT‑AAAAAAAAAAAAATAAAC‑‑TTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCA‑CATTTTATTTTTAAAATAAGATATTG‑ACataa                                  <  2:3010833/125‑1 (MQ=255)
                                                                                               aaaaaa‑aaaaaaaaaaaaaaaaACCTTAAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCA‑CATTTTATTTTTAAAATAAGATATTG‑ACata                                   <  2:582233/126‑1 (MQ=255)
                                                                                                 aaaT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAAAAAAACCCAACAATTATTTATAAAAAATACAAAATTTACCA‑AAATTTATTTTTTAAATAATAAATTG‑ACAAAatat                               >  2:3757588/1‑128 (MQ=255)
                                                                                                   aT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTAAATTTGTTAAAATAACCTATTTAACCA‑CATTTATTTTTAAAAATAACATATTG‑AAAAAatataaat                           >  2:7040511/1‑128 (MQ=255)
                                                                                                     aaaaaaaaaaaaaATACCATTAAAAA‑‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCA‑CATTTTATTTTTAAAATAAGATATTG‑ACATAatata                              <  2:432952/127‑1 (MQ=255)
                                                                                                           aaaaaCAATCCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAA‑TAAAAACAAACAGATATTCTTAAAAAACCCTATTTAACCA‑AATTTTATTTTTAAAATAATA‑ATTGTAAATAAAATATATCTAattt                    >  1:5410410/1‑126 (MQ=255)
                                                                                                             aaaCAATCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACAAAAAACAAACACATTTTATTAAAATACCAATTTAAACCA‑AATTTTATTTTTAAAATAAAATATTT‑AAATAatatattaatataaa                    >  1:6388153/1‑119 (MQ=255)
                                                                                                                aaaaatacccataaa‑‑aataaaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCA‑CATTTTATTTTTAAAATAAGATATTG‑ACATAATATATATCTAatata                   <  1:91047/117‑1 (MQ=255)
                                                                                                                 aaaataaaattaaa‑‑aattaaaaaAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCA‑CATTTTATTTTTAAAATAAGATATTG‑ACATAATATATATCTAatatat                  <  2:1125574/119‑1 (MQ=255)
                                                                                                                 aaaaatacccttaa‑‑aaattaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCA‑CATTTTATTTTTAAAATAAGATATTG‑ACATAATATATATCTAatatat                  <  2:5857551/116‑1 (MQ=255)
                                                                                                                 aaaaaacattaaaa‑‑aattaaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCA‑CATTTTATTTTTAAAATAAGATATTG‑ACATAATATATATCTAatatat                  <  1:5748787/117‑1 (MQ=255)
                                                                                                                   atcaacttaaaa‑‑ataaaaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCA‑CATTTTATTTTTAAAATAAGATATTG‑ACATAATATATATCTAatatatat                <  1:5522187/119‑1 (MQ=255)
                                                                                                                    aatccccttaa‑‑aaattaaaaaAAAAAAAAAAAAAAACAAAAAACAACAGAATTTTATTAAAAATACGTAAAATAACC‑AAATTTATTTTTAAAAAAACATTTTA‑AAATAATATTTAAAAAatatataat               >  1:5454269/10‑126 (MQ=255)
                                                                                                                     aaaaattAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCA‑CATTTTATTTTTAAAATAAGATATTG‑ACATAATATATATCTAATATATataa              <  1:803868/123‑1 (MQ=255)
                                                                                                                       cccttAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCA‑CATTTTATTTTTAAAATAAGATATTG‑ACATAATATATATCTAATATATataata            <  2:7173647/125‑1 (MQ=255)
                                                                                                                        ccttaaa‑‑aattaaaaaAAAAAAAAAAAAAAAAATAAAAACAAAAACTATTTATTAAAATTCCCTA‑TATAACACCATTTTATTTTTAAAATAAAATTTTA‑ACATAAAAAAAAAAAAATATATATAAAAc           >  1:4020594/3‑128 (MQ=255)
                                                                                                                        atataaa‑‑aataaaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCA‑CATTTTATTTTTAAAATAAGATATTG‑ACATAATATATATCTAATATATATAATAc           <  1:3520726/125‑1 (MQ=255)
                                                                                                                          attta‑‑aaataaaaaaAAAAATAAAATAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCA‑CATTTTATTTTTAAAATAAGATATTG‑ACATAATATATATCTAATATATATAATACta         <  2:3555160/124‑1 (MQ=255)
                                                                                                                             aa‑‑aaattaaaaaAAAAAAAAAAAAAAA‑AAAAAACAAACAATATTTATTAAAATTCCCTATTATAACA‑AAATTTATTTTTAAAATAAGATATTT‑AAATAATAtataaataatataaataaaaaaaaatt     >  2:4188368/1‑119 (MQ=255)
                                                                                                                                  aattaaaaaAAAAAAAAAAAAAAACAAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCA‑CATTTTATTTTTAAAATAAGATATTG‑ACATAATATATATCTAATATATATAATACTATATTGc   <  1:6455803/128‑1 (MQ=255)
                                                                                                                                  aataaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCACTATTATACCA‑CATTTTATTTTTAAAATAAGATATTG‑ACATAATATATATCTAATATATATAATACTATATTGc   <  2:3629827/128‑1 (MQ=255)
                                                                                                                                   |                                                                                                                                 
AATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCA‑CATTTTATTTTTAAAATAAGATATTG‑ACATAATATATATCTAATATATATAATACTATATTGCT  >  CP016816/202369‑202621

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑