Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,8951.T73.2% 1734.0 / inf 706intergenic (+279/+179)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base . (115/74);  new base T (436/80);  total (551/155)
Fisher's exact test for biased strand distribution p-value = 1.39e-10
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 878 total aligned reads displayed.

TTTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTG‑‑‑‑TTTTTTTTT‑‑TTTTTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATA  >  CP016816/203768‑204021
                                                                                                                                        |                                                                                                                                            
tttAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTg                                                                                                                                               >  2:6418285/1‑128 (MQ=255)
tttAATTTTTTTTATAAAAAAAAATAAAAATTTTTAATTTTAAGCCATTTGTAAAAAAGCCTATGTTCTAGGGTTTTTATTATACTTATAATCATTTCAACGCTTTCAAAGTGGATTTTTTAG‑‑G‑‑C‑‑TTg                                                                                                                                               >  2:6261477/1‑128 (MQ=255)
 ttAATTTTTTTTATAAAAAAAAATAAAAATTTTGCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCTAAGTGTTTTTTTTAG‑‑G‑‑C‑‑TTG‑‑‑‑t                                                                                                                                          >  2:3261560/1‑128 (MQ=255)
  tAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTAAAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑A‑‑TTG‑‑‑‑tt                                                                                                                                         >  2:1003330/1‑128 (MQ=255)
   aaTTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTG‑‑‑‑ttt                                                                                                                                        >  2:6767727/1‑128 (MQ=255)
     ttttttttATAAAAAAAAAATAAAATTTTTAATTTAAACTCATTTGTAAAAAATCCTATTTTTAAGGCTTTTTTTTTAACTTATAAAAATTAAAACCCTTTTAAAGTGTTTTTTTTAT‑‑G‑‑C‑‑TTG‑‑‑‑ttttt                                                                                                                                      <  1:6427219/128‑1 (MQ=255)
      tttttttATAAAAAAAAATAAAAATATTTCATTTAAAGCCATTTGTAAAAAACCCTATGTTCTAGGCTTTTTATTATACTTATCAAAATTAAAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTG‑‑‑‑tttttt                                                                                                                                     <  2:1716570/128‑1 (MQ=255)
         ttttttAAAAAAAAATAAAAATTTTTTATTTAAATCAATTTTTTAAAAATCATTTGTTTTATGTTTTTTTTTATAATTATAAAAATTAAAACGCTTTAAAATTGTTTTTTTTTT‑‑G‑‑A‑‑ttt‑‑‑‑ttttttttt                                                                                                                                  <  1:2798321/128‑1 (MQ=255)
         ttttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCATATGTTATAGGCTTTTTATTATAATTATCAAAATTACACCGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTG‑‑‑‑ttttttttt                                                                                                                                  >  1:625051/1‑128 (MQ=255)
          ttttTAAAAAAAAATAAAAATTTTTAATTTAAATCAATTTGTAAAAAAGCATTTTTTTTAGTTTTTTTATTATAATTATAAAAATTAAAAAGCTTTAAAAGTTTTTTTTTTTG‑‑G‑‑C‑‑TTG‑‑‑‑ttttttttt‑‑t                                                                                                                               <  1:4456565/128‑1 (MQ=255)
            tataAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTG‑‑‑‑ttttttttt‑‑att                                                                                                                             >  1:7032884/1‑128 (MQ=255)
             ataaaataaaATTAAAATTTTTCATTTAAAGCGATTTGTAAATAAGACTATGTTCTAGTCTTTTTATTATACTTATCAACATTAAAACACTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TAG‑‑‑‑ttttttttt‑‑tttt                                                                                                                            >  2:6654357/1‑128 (MQ=255)
               taaaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTG‑‑‑‑ttttttttt‑‑tttttt                                                                                                                          >  1:4834039/2‑128 (MQ=255)
                aaaaaaatTTAAATTTTTTATTTTAAATCCATTTTTAAAAAAGCATTTTTTTTTTGATTTTTTTTATAATTATAAAAATTAAAACGGTTTAAATTTTTTTTTTTTTG‑‑G‑‑G‑‑TTG‑‑‑‑ttttttttt‑‑ttttttt                                                                                                                         <  1:5267511/128‑1 (MQ=255)
                aaaaaaaaTATAAAATTTTAAATTAAATCCATTTTTAAAAAAGCCTATGTTCTAGGGTTTTTATTATACTTAACAAAATTAAAACGCTTTCAAATTGTATTTTTTAG‑‑G‑‑C‑‑TTG‑‑‑‑ttttttttt‑‑ttttttt                                                                                                                         <  1:5795543/128‑1 (MQ=255)
                aaaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTCAG‑‑G‑‑C‑‑TTG‑‑‑‑ttttttttt‑‑ttttttt                                                                                                                         >  2:2033817/1‑128 (MQ=255)
                      aataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑T‑‑C‑‑TTG‑‑‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑taaa                                                                                                              >  2:4241417/1‑128 (MQ=255)
                         aaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTG‑‑‑‑tgttttttt‑‑tttattttttttaaaa                                                                                                                >  2:5742956/1‑119 (MQ=255)
                         aaaaatTTTTAATTTAAACCAATTTTAATAAAATCATAAGTTTTAGGTTTTTTTTTTTATTTATAAAAATTAAAACGGTTTAAAATTTTTTTTTTTAG‑‑G‑‑C‑‑Ttt‑‑‑‑ttttttttt‑‑tttttttttgtaaaaa                                                                                                                <  2:2700095/128‑10 (MQ=255)
                          aatatTTTTAATTAAAAACAATTTTTAAAAAACCCTATTTTTTATGGTTTTTTTTATAATTATAAAAATTAAAACGCTTTCAAAGTTTATTTTTTTGG‑‑G‑‑T‑‑TTT‑‑‑‑TTTTTTTTT‑‑TTTTTTTGT‑‑‑AAAAATa                                                                                                           <  1:2444767/125‑1 (MQ=255)
                          aaaatTTTTTATTTTAATCCAATTTTTAAAAATCCTATTTTATTTGCTTTTTATTATAATTATCAAAATTACAACGGTTTTAAATTGTTTTTTTTTG‑‑G‑‑C‑‑TTGTT‑‑TTTTTTTTT‑‑TTTTTTTGT‑‑‑AAAAAt                                                                                                            <  1:6767727/128‑1 (MQ=255)
                          aaaatTTTTTATTTTAAGCCATTTTTAAAAAAGCCTTAGTTTTAGGCTTTTTATTATAATTATCAAAATTACAACGCTTTCAAATTTTTTTTTTTAG‑‑G‑‑G‑‑TTGT‑‑‑TTTTTTTTT‑‑TTTTTTTGT‑‑‑AAAAATa                                                                                                           <  1:5566003/128‑1 (MQ=255)
                           aaatTTTTTATTTTAAGGAATTTTTAAAAAATCATATGTTATTTGTTTTTTATTATAATTATAAAAATTAAAACGCTTTAAAAGTGTTTTTTTTTG‑‑G‑‑G‑‑TTGTT‑‑TTTTTTTTT‑‑TTTTTTTGT‑‑‑AAAAATa                                                                                                           <  1:1460423/128‑1 (MQ=255)
                             atTTTTTATTTTAATCAATTTTTAAAAAATTCTATTTTATTTTTTTTTTTTTATATTTATAAAAATTAAAATGTTTTAAAATTTTTTTTTTTTG‑‑G‑‑C‑‑TTGTT‑‑TTTTTTTTT‑‑TTTTTTTGT‑‑‑AAAAATaaa                                                                                                         <  2:4961696/128‑1 (MQ=255)
                             atTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑GAT‑‑TTT‑‑‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAATaaaa                                                                                                        >  2:3394949/1‑128 (MQ=255)
                              tttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTG‑‑‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑TTaaaaaaaaaa                                                                                                      >  1:3674173/1‑126 (MQ=255)
                              tttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTATTAG‑‑G‑‑C‑‑TTG‑‑‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑aaaaaaaaaatt                                                                                                      >  2:1577322/1‑126 (MQ=255)
                               ttttTATTTAAATCCATTTTTAAAAAAGACTATTTTTTTTGTTTTTTTTTATTATTTTTAAAATTACAACTCTTTAAAATTTTATTTTTTAG‑‑G‑‑C‑‑TTGTT‑‑TTTTTTTTT‑‑TTTTTTTGT‑‑‑AAAAATAAAAg                                                                                                       <  2:6028827/128‑1 (MQ=255)
                               ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGATTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGTT‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAATAAAAg                                                                                                       >  2:7081578/1‑128 (MQ=255)
                                 ttattttATATCCATTTTTAAAAAATGTTATTTTTTTTGTTTTTTATTATACTTATCAACTATTCAACGTTTTAAAATTGTATTTTTTTT‑‑G‑‑G‑‑TTGTTTTTTTTTTTT‑‑TTTTTTTGT‑‑‑AAAAATAAAAGt                                                                                                      <  1:7195965/124‑1 (MQ=255)
                                 ttCATTTAAATCAATTTTTAAAAAATAATATTTTATTTTTTTTTTATTATACTTATTAAAATTAAAACGATTTAAAATTTTATTTTTTAG‑‑G‑‑CTTTTT‑‑‑‑TTTTTTTTT‑‑TTTTTTTGT‑‑‑AAAAATAAAAGTa                                                                                                     <  2:109657/128‑1 (MQ=255)
                                      ttAAATCAATATTTAAAAAAGCCTATTTTATTGGATTTTTTTTATAATTATAAAAATTAAAACGCTTTCAAAGTTTTTTTTTTTGGTG‑‑T‑‑TTT‑‑‑‑TTTTTTTTT‑‑TTTTTTTGT‑‑‑AAAAATAATAGTAAGAtt                                                                                              <  1:1788569/128‑1 (MQ=255)
                                          acccATTTTTAAAAATACATATTTTATTGGTTTTTTATTATAATTATAAAAATTACAACGTTTTAAATTTTTTTTTTTTTG‑‑GGTT‑‑TTT‑‑‑‑TTTTTTTTT‑‑TTTTTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGa                                                                                          <  1:6321887/126‑1 (MQ=255)
                                          aGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGTT‑‑TTTTTTTTT‑‑TTTTTTTGT‑‑‑TAAAATAAAAGTTATATTTTGa                                                                                          >  2:3977593/1‑128 (MQ=255)
                                           gCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGT‑‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAAAAAAAGTAAAAATTTGAta                                                                                        >  2:3792676/1‑127 (MQ=255)
                                             taTTTTTAAAAAAGCCTATGTTCTTGGATTTTTATTATAATTATAAACATTAAAACGCTTTAAAATTGTATTTTTTTG‑‑G‑‑C‑‑TTGTTTTTTTTTTTTT‑‑TTTTTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGAt                                                                                         <  2:5590204/127‑1 (MQ=255)
                                              aTTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGT‑‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAATAAAAGTAAGATTTGGAtaatc                                                                                     >  2:3073090/1‑124 (MQ=255)
                                                  gTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTG‑‑‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAAAAAAATTTAATTTTTGATGAAACaaaa                                                                               >  1:4229990/1‑128 (MQ=255)
                                                    aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTG‑‑‑‑TTTTTTTTT‑‑TTTTTTTGT‑‑‑AAAAATAAAATTAAAATTTTTATAAAACAACACt                                                                             >  2:5496892/1‑128 (MQ=255)
                                                      aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGTT‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑TAAAATAAAATTTATATTTGGTTAAACAaaaaat                                                                             >  2:3136447/1‑126 (MQ=255)
                                                      aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATAAGAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGG‑‑‑‑TTTTTTTTT‑‑TTTTTATTT‑‑‑AAATATTAATTTTATATTTTGATAAACAaaaaaaa                                                                            >  2:781028/1‑125 (MQ=255)
                                                       aaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTG‑‑‑‑TTTTTTTTTTATTTTTTTTT‑‑‑TAAAATAAAATTAATATTTTTATAAAACaaaaaaa                                                                            >  1:156931/1‑125 (MQ=255)
                                                       aaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTG‑‑‑‑TTTTTTTTT‑‑TTTTTTTATT‑‑‑AAAAAAAAAATTAAGAATTGGAACAACCaaaaaaaa                                                                           >  2:537629/1‑124 (MQ=255)
                                                         aGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGTT‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑TAAAATAAAATTAAAATTTGGATTAACCacgacttat                                                                          >  2:1438728/1‑120 (MQ=255)
                                                            cTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGTT‑‑TTTTTTTTT‑‑TTTTTTTGT‑‑‑AAAAAAAAAATTAAGTTTTGGAACAAGAAAAAATttataa                                                                      >  2:1326483/1‑126 (MQ=255)
                                                             tttttttttggCTTTTTTTTATAATTATTAAAATTTAAACGCTTTCAAATTTTATTTTTTTT‑‑G‑‑C‑‑TTGT‑‑‑TTTTTTTTT‑‑TTTTTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCaaa                                                                    <  1:548521/119‑1 (MQ=255)
                                                               gaacatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGTTTTTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAATAAAATTAAGATTTTGATAAACCAAAAAtataaaaaa                                                                     >  1:5684951/6‑123 (MQ=255)
                                                                gTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGT‑‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑ATAAAAAAAAAATAAATTTTGTTTAAACCAAAACTATaaaaaaaa                                                                  >  1:4709335/1‑128 (MQ=255)
                                                                 acatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGTTTTTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAAAAAAAGTAAAATTTTGA‑‑AAACAAAAAAATATTaaaaaaa                                                                >  1:5738958/4‑128 (MQ=255)
                                                                  tCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGTT‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAAAAAAAATAATATTTTGAAAAACAAAAAAATATaaaaaaaaa                                                               >  2:5248503/1‑127 (MQ=255)
                                                                   cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGTTTTTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAATAAAATTAATATTTTAAAAAACAAAAAATATaaaaaaaaaa                                                                >  2:44344/1‑128 (MQ=255)
                                                                   cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGTT‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAATAAAATTAATATTTTGATCAACCAAAAAAATATaaaaaaaaa                                                               >  2:2517409/1‑127 (MQ=255)
                                                                   cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGTT‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAATAAAATATATATTTTGATGAACAAAAAATATATATAAAAAAt                                                               >  2:2254634/1‑128 (MQ=255)
                                                                   cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGTT‑‑TTTTTTTTT‑‑TTTTTTTGT‑‑‑AAAAATAAAAATAAGTTTTGGATCAACCAAAAAATATTCAAAAAAAt                                                               >  1:6622325/1‑128 (MQ=255)
                                                                   atAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGT‑‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAATAAAATTAATTTTTTGATCAACCAAAAATTTATCAAAAAAAtt                                                              >  2:3719765/2‑128 (MQ=255)
                                                                   atAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGT‑‑‑TTTTTTTTT‑‑TTTTTTTGT‑‑‑AAAAAAAAAATTAATTTTTGGATAAACAAAAAATATATAAAAAAAAtt                                                              >  2:5796845/2‑128 (MQ=255)
                                                                    tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGT‑‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAAAAAAATTAAAATTTTTATAAACCAAAAATATTTCAAAAAAATTa                                                             >  2:4353868/1‑128 (MQ=255)
                                                                     aGGCGTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGTT‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑TAAAAAAAAATAAAAATTAGGTTACACCAAAACTAAAGAAAAAAAAtat                                                             >  1:6991374/1‑126 (MQ=255)
                                                                      tgttttttATTATTCTTTTTATAATTTCTTCTCTTTCTATTTGTTTTTTTTTT‑‑G‑‑C‑‑TTGTT‑‑TTTTTTTTT‑‑TTTTTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTaa                                                            <  2:6380384/125‑1 (MQ=255)
                                                                      ggCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGTTTTTTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAATTAAAGTAAAATTTGTATAAAACAAAAATAATTaaaaaaaaat                                                              >  2:4099158/1‑126 (MQ=255)
                                                                         ttttttttATTCTTATAAAATTTAAATAGTTTTTAAAGTGTATTTTTTTT‑‑G‑‑C‑‑TTG‑‑‑‑TTTTTTTT‑‑TTTTTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTaaaaaaaa                                                      <  2:2871861/128‑1 (MQ=255)
                                                                         tttttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGTT‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAATAAAATTAAAATTTTGATCAACCAAAAATATATAAAAAAAATTaaaaa                                                         >  2:901371/1‑128 (MQ=255)
                                                                          ttttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGT‑‑‑TTTTTTTTT‑‑TTTTTTTGT‑‑‑AAAAAAAAAAGTAAGATTTGGATAAACAAAAAAAATATAAAAAAAAATaaaaaaa                                                       >  1:123452/1‑128 (MQ=255)
                                                                           tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGTT‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAAAAAAATTAATTTTTTGTTAAAACAAAAATTTTTAAAAAAAATTaaaaaaa                                                       >  2:1937534/1‑128 (MQ=255)
                                                                            ttattaTACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGTT‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAATAAAATTAAGATTTTTATAAACAAAAAATATataaaaaaaaataaaaaaaa                                                      >  2:2441008/1‑128 (MQ=255)
                                                                            ttattaTACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTG‑‑‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAAAAAAAATAATAATTTTTAAAAACAAAAAAAAATTAAAAAAATTaaaaaaaaaa                                                    >  2:1857141/1‑126 (MQ=255)
                                                                               ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGTT‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAATAAAATTAAGATTTGGATAACCCAAAACTTTTTAAAAAAAATTAAAAAAAAtat                                                   >  2:6537539/1‑127 (MQ=255)
                                                                                 ataCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGT‑‑‑TTTTTTTTT‑‑TTTTTTTGT‑‑‑AAAAATAAAAATAATATATGGAAAAAACAAAAATAAATAAAAAAAAATAAAAAAAAaatttt                                                >  1:7096721/1‑128 (MQ=255)
                                                                                  taCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑T‑‑C‑‑TTGT‑‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑TAAAATTAAATTAATAATTTTTTAAACCAAAACTAAATAAAAATAATTAAAAAAAAtattatt                                               >  1:3816741/1‑123 (MQ=255)
                                                                                    cTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTG‑‑‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAATAAAAGTAATATTTGGATAAACCAAAACAATTTAAAAAAAATTTAAAAAAAaagtttagtt                                            >  2:7176373/1‑128 (MQ=255)
                                                                                     ttATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGTT‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑TAAAAAAAAAATAATATTTTTTAAAAACCAAAAAATATAAAAAAAAATTAAAAAAAAAtattttt                                               >  1:2304783/1‑127 (MQ=255)
                                                                                      tATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGTT‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAAAAAAATTAAAATTTTTAAAAACCAAAAATAATAAAAAAAAATTAAAAAAAAtttttttttt                                            >  1:2139219/1‑119 (MQ=255)
                                                                                         cAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGTTTTTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAATAAAAATAAAATTTTTATAAACCAAAAAAATAACAAAAAAATAAAAAAAAAtatataatatga                                          >  2:6463344/1‑118 (MQ=255)
                                                                                         cAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGTT‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAAAAAAAGTAAAATTTGGAAAAACAAAAAATATATAAAAAAAATATAAAAAAAtattttatttaat                                         >  2:2776249/1‑125 (MQ=255)
                                                                                         cAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGTT‑‑TTTTTTTTT‑‑TTTTTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGATAAACCAAAACTATATAAAAAAAATTAAAAAAAAttgtatagtttat                                         >  2:5658153/1‑125 (MQ=255)
                                                                                         cAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGT‑‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAAAAAAATTAAATTTTGTATCAACAAAAAAAAAAAAAAAAAAATAAAAAAAAAtattttaattattt                                        >  1:843281/1‑124 (MQ=255)
                                                                                           aCATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGTTTTTTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAAAAAAATAAAAATTTTAAACCACAAAAAATAAAAAAAAAAAAATAAAAAAAAtatttaaattcat                                         >  2:3501229/1‑120 (MQ=255)
                                                                                             aTTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGTTTTTTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAATAAAATTTATATTTGGAAAAACCAAAAATAAAAAAAAAAAATTAAAAAAAAtagtttttgtgattt                                       >  1:6862174/1‑119 (MQ=255)
                                                                                             aTTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGTT‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAATAAAAGTAATATTTTGTTAAACCAAAAATAATTAAAAAAAATAAAAAAAAAATTTTTATTTGAtttta                                     >  1:1707843/1‑127 (MQ=255)
                                                                                             aTTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGT‑‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑TAAAATAAATGTAATATTTGGATCAAACAAAAAAATTTAAAAAAAATTAAAAAAAAaatttttattttttttaa                                    >  1:3046646/1‑116 (MQ=255)
                                                                                               tACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGTTTTTTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAATAAAATAAATTTTTTTATAAACCAAAAAAAATAAAAAAAAATTAAAAAAAAttttttatttaatttaa                                     >  2:6829929/1‑121 (MQ=255)
                                                                                               tACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGTTTTTTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAAAAAAATTAAATTTTGTAAAAACAAAAAATAATAAAAAAAAATAAAAAAAAaatttttagtttatttaa                                    >  2:838212/1‑116 (MQ=255)
                                                                                                 cAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGTTTTTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAATAAAAGTAAAATTTTGTAAAACAAAAAATATATAAAAAAAATTAAAAAAAAAAATTTTCTTTAGttaaaaa                                  >  1:3451556/1‑123 (MQ=255)
                                                                                                   aCGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGTTTTTTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAATAAAATTAATATTTTGATAAAACAAAAATATATAAAAAAAATTAAAAAAAATAGTTTATTTTATTTTaaaaa                                 >  2:5947740/1‑127 (MQ=255)
                                                                                                   aCGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTG‑‑‑‑TTTTTTTTT‑‑TTTTTTTTTTTAAAAAAAAAAAAAAATATTTTGATAAACAAAAACATTAAAAAAAAAATTAAAAAAATAATTTTATTTAATTTTAAAAta                                >  2:1202463/1‑127 (MQ=255)
                                                                                                     gCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGTT‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAATAAAAGTAATATTTGTATCACCCAAAAATATATAAAAAAAATTAAAAAAAATTATTTAGTTTAGTTTAAAAtaatc                             >  2:3861016/1‑124 (MQ=255)
                                                                                                     gCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGT‑‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAATAAAATTAATATTTTAATAAACCAAAAAAAATAAAAAAAAATTAAAAAAAAAATTTAATTTTAGttaaaaaaataaa                            >  1:5908041/1‑117 (MQ=255)
                                                                                                      cTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGTT‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAAAAAAATTATAATTTTGGATAAACAAAAAATTTTAAAAAAAATTTAAAAAAAATTTTTATTTTAATTTCaaaatgtaa                            >  2:4611576/1‑122 (MQ=255)
                                                                                                      cTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGTT‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAAAAAAATTAAAATTTGGATAAAAAAAAAATATAAAAAAAAAATAAAAAAAAAAATTTTATTTAATTTTAAAAACTTCa                            >  1:6171504/1‑128 (MQ=255)
                                                                                                        ttCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGTTTTTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAATAAAAGTAATATTTGGATAAAAAAAAAATATATAAAAAAAATTAAAAAAAAAATTTTATTTAAGttaaaaaaattcat                           >  2:5098353/1‑116 (MQ=255)
                                                                                                        ttCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGTT‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAAAAAAATTTATTTTTTGTTAAACCAAAACTATTAAAAAAAAATTAAAAAAAAAATTTTATTTGTTTTTAAAATATGAata                          >  2:6925266/1‑128 (MQ=255)
                                                                                                        ttCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTGT‑‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAAAAAAAAAAAAATTTTGATAAAACAAAAATATAAAAAAAAAATTAAAAAAAAAAATTTATTTGAATTTaaaaaattaaaat                         >  1:1008898/1‑119 (MQ=255)
                                                                                                           aaaGTGTATTTTTTAG‑‑G‑‑C‑‑TTGTT‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAATAAAATTAAAATTTGGATAAACCAAAAATATATCAAAAAAATTAAAAAAAATATTTTATTTTATTTTaaaaacacaaaatag                       >  2:5448392/1‑117 (MQ=255)
                                                                                                             aGTGTATTTTTTAG‑‑G‑‑C‑‑TTGTTTTTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAATAAAATTAATATTTTTATAAACAAAAAAATTATAAAAAAAATTAAAAAAAATATTTTTTTTGAGTTTAAAAAATGAatattaa                      >  2:3654632/1‑125 (MQ=255)
                                                                                                               tgtATTTTTTAG‑‑G‑‑C‑‑TTGTTTTTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAAAAAAATTAATATTTGGATCAACCAAAAATATTTAAAAAAAAATAAAAAAAATAATTTATTTGATTTTAAAATAAGCAAATATAGt                    >  2:4772515/1‑128 (MQ=255)
                                                                                                                gtATTTTTTAG‑‑G‑‑C‑‑TTGTT‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAATAAAATTAAAATTTGTTTAAACAAAAAAAATATAAAAAAAAATAAAAAAAAAATTATATTTAATTTTAAAATATGAaaataatttac                  >  1:4990223/1‑122 (MQ=255)
                                                                                                                 tATTTTTTAG‑‑G‑‑C‑‑TTGTT‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAATAAAAGTAATATTTGGTTAAACCAAAAATATATAAAAAAAATTAAAAAAAATATTTTATTTGTTTTTAAAATATGCataaatttttaa                 >  2:6208672/1‑122 (MQ=255)
                                                                                                                  aTTTTTTAG‑‑G‑‑C‑‑TTGT‑‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAATAAAATTAATATTTGTAAAAACCAAAAATATATAAAAAAAATTAAAAAAAATATTTTATTTTATTTTAAAATATGCATATATATTAaaaa               >  1:6520360/1‑128 (MQ=255)
                                                                                                                         tAG‑‑G‑‑C‑‑TTGTT‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑TAAAATAAAATTTAAATTTGGTACAACCAAAACTTATTAAAAAAAATTAAAAAAAATATTTTTTTTGTGTTTAAAATCTGAATATATTTTAAAAAGGCAt          >  2:4528871/1‑128 (MQ=255)
                                                                                                                          aG‑‑G‑‑C‑‑TTG‑‑‑‑TTTTTTTTT‑‑TTTTTTTTT‑‑‑AAAAAAAAAATTAAAATTTGGATAAACCAAAAATATATCAAAAAAAAAAAAAAAAATATTTTATTTTATTTTCAAATATACATAAAATATAAAAAGTAATTTa       >  1:6054778/1‑128 (MQ=255)
                                                                                                                                        |                                                                                                                                            
TTTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑G‑‑C‑‑TTG‑‑‑‑TTTTTTTTT‑‑TTTTTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATA  >  CP016816/203768‑204021

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: