Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,8952.T56.2% inf / inf 706intergenic (+279/+179)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base . (211/98);  new base T (340/57);  total (551/155)
Fisher's exact test for biased strand distribution p-value = 4.77e-08
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 878 total aligned reads displayed.

TTTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑G‑‑‑‑TTTTTTTTT‑‑TTTTTTT‑GT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATCAACC‑AAAACTATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATA  >  CP016816/203768‑204021
                                                                                                                                         |                                                                                                                                           
tttAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑g                                                                                                                                               >  2:6418285/1‑128 (MQ=255)
tttAATTTTTTTTATAAAAAAAAATAAAAATTTTTAATTTTAAGCCATTTGTAAAAAAGCCTATGTTCTAGGGTTTTTATTATACTTATAATCATTTCAACGCTTTCAAAGTGGA‑TTTTTTAG‑‑G‑‑C‑‑TT‑g                                                                                                                                               >  2:6261477/1‑128 (MQ=255)
 ttAATTTTTTTTATAAAAAAAAATAAAAATTTTGCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCTAAGTGTT‑TTTTTTAG‑‑G‑‑C‑‑TT‑G‑‑‑‑t                                                                                                                                          >  2:3261560/1‑128 (MQ=255)
  tAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTAAAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑A‑‑TT‑G‑‑‑‑tt                                                                                                                                         >  2:1003330/1‑128 (MQ=255)
   aaTTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑G‑‑‑‑ttt                                                                                                                                        >  2:6767727/1‑128 (MQ=255)
     ttttttttATAAAAAAAAAATAAAATTTTTAATTTAAACTCATTTGTAAAAAATCCTATTTTTAAGGCTTTTTTTTTAACTTATAAAAATTAAAACCCTTTTAAAGTGTT‑TTTTTTAT‑‑G‑‑C‑‑TT‑G‑‑‑‑ttttt                                                                                                                                      <  1:6427219/128‑1 (MQ=255)
      tttttttATAAAAAAAAATAAAAATATTTCATTTAAAGCCATTTGTAAAAAACCCTATGTTCTAGGCTTTTTATTATACTTATCAAAATTAAAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑G‑‑‑‑tttttt                                                                                                                                     <  2:1716570/128‑1 (MQ=255)
         ttttttAAAAAAAAATAAAAATTTTTTATTTAAATCAATTTTTTAAAAATCATTTGTTTTATGTTTTTTTTTATAATTATAAAAATTAAAACGCTTTAAAATTGTT‑TTTTTTTT‑‑G‑‑A‑‑tt‑t‑‑‑‑ttttttttt                                                                                                                                  <  1:2798321/128‑1 (MQ=255)
         ttttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCATATGTTATAGGCTTTTTATTATAATTATCAAAATTACACCGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑G‑‑‑‑ttttttttt                                                                                                                                  >  1:625051/1‑128 (MQ=255)
          ttttTAAAAAAAAATAAAAATTTTTAATTTAAATCAATTTGTAAAAAAGCATTTTTTTTAGTTTTTTTATTATAATTATAAAAATTAAAAAGCTTTAAAAGTTTT‑TTTTTTTG‑‑G‑‑C‑‑TT‑G‑‑‑‑ttttttttt‑‑t                                                                                                                               <  1:4456565/128‑1 (MQ=255)
            tataAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑G‑‑‑‑ttttttttt‑‑att                                                                                                                             >  1:7032884/1‑128 (MQ=255)
             ataaaataaaATTAAAATTTTTCATTTAAAGCGATTTGTAAATAAGACTATGTTCTAGTCTTTTTATTATACTTATCAACATTAAAACACTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TA‑G‑‑‑‑ttttttttt‑‑tttt                                                                                                                            >  2:6654357/1‑128 (MQ=255)
               taaaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑G‑‑‑‑ttttttttt‑‑tttttt                                                                                                                          >  1:4834039/2‑128 (MQ=255)
                aaaaaaatTTAAATTTTTTATTTTAAATCCATTTTTAAAAAAGCATTTTTTTTTTGATTTTTTTTATAATTATAAAAATTAAAACGGTTTAAATTTTTT‑TTTTTTTG‑‑G‑‑G‑‑TT‑G‑‑‑‑ttttttttt‑‑ttttttt                                                                                                                         <  1:5267511/128‑1 (MQ=255)
                aaaaaaaaTATAAAATTTTAAATTAAATCCATTTTTAAAAAAGCCTATGTTCTAGGGTTTTTATTATACTTAACAAAATTAAAACGCTTTCAAATTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑G‑‑‑‑ttttttttt‑‑ttttttt                                                                                                                         <  1:5795543/128‑1 (MQ=255)
                aaaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTCAG‑‑G‑‑C‑‑TT‑G‑‑‑‑ttttttttt‑‑ttttttt                                                                                                                         >  2:2033817/1‑128 (MQ=255)
                      aataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑T‑‑C‑‑TT‑G‑‑‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑t‑aaa                                                                                                              >  2:4241417/1‑128 (MQ=255)
                         aaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑G‑‑‑‑tgttttttt‑‑tttattttttttaaaa                                                                                                                >  2:5742956/1‑119 (MQ=255)
                         aaaaatTTTTAATTTAAACCAATTTTAATAAAATCATAAGTTTTAGGTTTTTTTTTTTATTTATAAAAATTAAAACGGTTTAAAATTTTT‑TTTTTTAG‑‑G‑‑C‑‑Tt‑t‑‑‑‑ttttttttt‑‑tttttttttgtaaaaa                                                                                                                <  2:2700095/128‑10 (MQ=255)
                          aatatTTTTAATTAAAAACAATTTTTAAAAAACCCTATTTTTTATGGTTTTTTTTATAATTATAAAAATTAAAACGCTTTCAAAGTTTATTTTTTTGG‑‑G‑‑T‑‑TT‑T‑‑‑‑TTTTTTTTT‑‑TTTTTTT‑GT‑‑‑A‑AAAATa                                                                                                           <  1:2444767/125‑1 (MQ=255)
                          aaaatTTTTTATTTTAATCCAATTTTTAAAAATCCTATTTTATTTGCTTTTTATTATAATTATCAAAATTACAACGGTTTTAAATTGTT‑TTTTTTTG‑‑G‑‑C‑‑TT‑GTT‑‑TTTTTTTTT‑‑TTTTTTT‑GT‑‑‑A‑AAAAt                                                                                                            <  1:6767727/128‑1 (MQ=255)
                          aaaatTTTTTATTTTAAGCCATTTTTAAAAAAGCCTTAGTTTTAGGCTTTTTATTATAATTATCAAAATTACAACGCTTTCAAATTTTT‑TTTTTTAG‑‑G‑‑G‑‑TT‑GT‑‑‑TTTTTTTTT‑‑TTTTTTT‑GT‑‑‑A‑AAAATa                                                                                                           <  1:5566003/128‑1 (MQ=255)
                           aaatTTTTTATTTTAAGGAATTTTTAAAAAATCATATGTTATTTGTTTTTTATTATAATTATAAAAATTAAAACGCTTTAAAAGTGTT‑TTTTTTTG‑‑G‑‑G‑‑TT‑GTT‑‑TTTTTTTTT‑‑TTTTTTT‑GT‑‑‑A‑AAAATa                                                                                                           <  1:1460423/128‑1 (MQ=255)
                             atTTTTTATTTTAATCAATTTTTAAAAAATTCTATTTTATTTTTTTTTTTTTATATTTATAAAAATTAAAATGTTTTAAAATTTTT‑TTTTTTTG‑‑G‑‑C‑‑TT‑GTT‑‑TTTTTTTTT‑‑TTTTTTT‑GT‑‑‑A‑AAAATaaa                                                                                                         <  2:4961696/128‑1 (MQ=255)
                             atTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑GA‑T‑‑TT‑T‑‑‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAATaaaa                                                                                                        >  2:3394949/1‑128 (MQ=255)
                              tttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑G‑‑‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑T‑Taaaaaaaaaa                                                                                                      >  1:3674173/1‑126 (MQ=255)
                              tttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTATTAG‑‑G‑‑C‑‑TT‑G‑‑‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑a‑aaaaaaaaatt                                                                                                      >  2:1577322/1‑126 (MQ=255)
                               ttttTATTTAAATCCATTTTTAAAAAAGACTATTTTTTTTGTTTTTTTTTATTATTTTTAAAATTACAACTCTTTAAAATTTTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTT‑‑TTTTTTTTT‑‑TTTTTTT‑GT‑‑‑A‑AAAATAAAAg                                                                                                       <  2:6028827/128‑1 (MQ=255)
                               ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGATTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTT‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAATAAAAg                                                                                                       >  2:7081578/1‑128 (MQ=255)
                                 ttattttATATCCATTTTTAAAAAATGTTATTTTTTTTGTTTTTTATTATACTTATCAACTATTCAACGTTTTAAAATTGTA‑TTTTTTTT‑‑G‑‑G‑‑TT‑GTTT‑TTTTTTTTT‑‑TTTTTTT‑GT‑‑‑A‑AAAATAAAAGt                                                                                                      <  1:7195965/124‑1 (MQ=255)
                                 ttCATTTAAATCAATTTTTAAAAAATAATATTTTATTTTTTTTTTATTATACTTATTAAAATTAAAACGATTTAAAATTTTA‑TTTTTTAG‑‑G‑‑CTTTT‑T‑‑‑‑TTTTTTTTT‑‑TTTTTTT‑GT‑‑‑A‑AAAATAAAAGTa                                                                                                     <  2:109657/128‑1 (MQ=255)
                                      ttAAATCAATATTTAAAAAAGCCTATTTTATTGGATTTTTTTTATAATTATAAAAATTAAAACGCTTTCAAAGTTTT‑TTTTTTTGGTG‑‑T‑‑TT‑T‑‑‑‑TTTTTTTTT‑‑TTTTTTT‑GT‑‑‑A‑AAAATAATAGTA‑AGA‑tt                                                                                              <  1:1788569/128‑1 (MQ=255)
                                          acccATTTTTAAAAATACATATTTTATTGGTTTTTTATTATAATTATAAAAATTACAACGTTTTAAATTTTTT‑TTTTTTTG‑‑GGTT‑‑TT‑T‑‑‑‑TTTTTTTTT‑‑TTTTTTT‑GT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGa                                                                                          <  1:6321887/126‑1 (MQ=255)
                                          aGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTT‑‑TTTTTTTTT‑‑TTTTTTT‑GT‑‑‑T‑AAAATAAAAGTT‑ATA‑TTTTGa                                                                                          >  2:3977593/1‑128 (MQ=255)
                                           gCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GT‑‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAAAAAAAGTA‑AAA‑ATTTGAta                                                                                        >  2:3792676/1‑127 (MQ=255)
                                             taTTTTTAAAAAAGCCTATGTTCTTGGATTTTTATTATAATTATAAACATTAAAACGCTTTAAAATTGTA‑TTTTTTTG‑‑G‑‑C‑‑TT‑GTTTTTTTTTTTTT‑‑TTTTTTT‑GT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGAt                                                                                         <  2:5590204/127‑1 (MQ=255)
                                              aTTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GT‑‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGAtaatc                                                                                     >  2:3073090/1‑124 (MQ=255)
                                                  gTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑G‑‑‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAAAAAAATTT‑AAT‑TTTTGATGAAAC‑aaaa                                                                               >  1:4229990/1‑128 (MQ=255)
                                                    aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑G‑‑‑‑TTTTTTTTT‑‑TTTTTTT‑GT‑‑‑A‑AAAATAAAATTA‑AAA‑TTTTTATAAAAC‑AACACt                                                                             >  2:5496892/1‑128 (MQ=255)
                                                      aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTT‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑T‑AAAATAAAATTT‑ATA‑TTTGGTTAAACA‑aaaaat                                                                             >  2:3136447/1‑126 (MQ=255)
                                                      aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATAAGAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TTGG‑‑‑‑TTTTTTTTT‑‑TTTTTAT‑TT‑‑‑A‑AATATTAATTTT‑ATA‑TTTTGATAAACA‑aaaaaaa                                                                            >  2:781028/1‑125 (MQ=255)
                                                       aaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑G‑‑‑‑TTTTTTTTTTATTTTTTT‑TT‑‑‑T‑AAAATAAAATTA‑ATA‑TTTTTATAAAAC‑aaaaaaa                                                                            >  1:156931/1‑125 (MQ=255)
                                                       aaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑G‑‑‑‑TTTTTTTTT‑‑TTTTTTTATT‑‑‑A‑AAAAAAAAATTA‑AGA‑ATTGGAACAACC‑aaaaaaaa                                                                           >  2:537629/1‑124 (MQ=255)
                                                         aGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTT‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑T‑AAAATAAAATTA‑AAA‑TTTGGATTAACC‑acgacttat                                                                          >  2:1438728/1‑120 (MQ=255)
                                                            cTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTT‑‑TTTTTTTTT‑‑TTTTTTT‑GT‑‑‑A‑AAAAAAAAATTA‑AGT‑TTTGGAACAAGA‑AAAAATtta‑taa                                                                      >  2:1326483/1‑126 (MQ=255)
                                                             tttttttttggCTTTTTTTTATAATTATTAAAATTTAAACGCTTTCAAATTTTA‑TTTTTTTT‑‑G‑‑C‑‑TT‑GT‑‑‑TTTTTTTTT‑‑TTTTTTT‑GT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATCAACC‑AAAACTATA‑TCaaa                                                                    <  1:548521/119‑1 (MQ=255)
                                                               gaacatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTTT‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAATAAAATTA‑AGA‑TTTTGATAAACC‑AAAAAtataaaaaa                                                                     >  1:5684951/6‑123 (MQ=255)
                                                                gTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GT‑‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑ATAAAAAAAAAATA‑AAT‑TTTGTTTAAACC‑AAAACTATa‑aaaaaaa                                                                  >  1:4709335/1‑128 (MQ=255)
                                                                 acatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTTT‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAAAAAAAGTA‑AAA‑TTTTGA‑‑AAAC‑AAAAAAATA‑TTaaaaaaa                                                                >  1:5738958/4‑128 (MQ=255)
                                                                  tCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTT‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAAAAAAAATA‑ATA‑TTTTGA‑AAAAC‑AAAAAAATA‑Taaaaaaaaa                                                               >  2:5248503/1‑127 (MQ=255)
                                                                   cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTTT‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAATAAAATTA‑ATA‑TTTTAAAAAACA‑AAAAATATa‑aaaaaaaaa                                                                >  2:44344/1‑128 (MQ=255)
                                                                   cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTT‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAATAAAATTA‑ATA‑TTTTGATCAACC‑AAAAAAATA‑Taaaaaaaaa                                                               >  2:2517409/1‑127 (MQ=255)
                                                                   cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTT‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAATAAAATAT‑ATA‑TTTTGATGAACA‑AAAAATATA‑TATAAAAAAt                                                               >  2:2254634/1‑128 (MQ=255)
                                                                   cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTT‑‑TTTTTTTTT‑‑TTTTTTT‑GT‑‑‑A‑AAAATAAAAATA‑AGT‑TTTGGATCAACC‑AAAA‑AATATTCAAAAAAAt                                                               >  1:6622325/1‑128 (MQ=255)
                                                                   atAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GT‑‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAATAAAATTA‑ATT‑TTTTGATCAACC‑AAAAATTTA‑TCAAAAAAAtt                                                              >  2:3719765/2‑128 (MQ=255)
                                                                   atAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GT‑‑‑TTTTTTTTT‑‑TTTTTTT‑GT‑‑‑A‑AAAAAAAAATTA‑ATT‑TTTGGATAAACA‑AAAAATATA‑TAAAAAAAAtt                                                              >  2:5796845/2‑128 (MQ=255)
                                                                    tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GT‑‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAAAAAAATTA‑AAA‑TTTTTATAAACC‑AAAAATATT‑TCAAAAAAATTa                                                             >  2:4353868/1‑128 (MQ=255)
                                                                     aGGCGTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTT‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑T‑AAAAAAAAATAA‑AAA‑TTAGGTTACACC‑AAAACTAAA‑GAAAAAAAAtat                                                             >  1:6991374/1‑126 (MQ=255)
                                                                      tgttttttATTATTCTTTTTATAATTTCTTCTCTTTCTATTTGTT‑TTTTTTTT‑‑G‑‑C‑‑TT‑GTT‑‑TTTTTTTTT‑‑TTTTTTT‑GT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATCAACC‑AAAACTATA‑TCAAAAAAATTaa                                                            <  2:6380384/125‑1 (MQ=255)
                                                                      ggCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTTTTTTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAATTAAAGTA‑AAA‑TTTGTATAAAAC‑AAAAATAAT‑Taaaaaaaaat                                                              >  2:4099158/1‑126 (MQ=255)
                                                                         ttttttttATTCTTATAAAATTTAAATAGTTTTTAAAGTGTA‑TTTTTTTT‑‑G‑‑C‑‑TT‑G‑‑‑‑‑TTTTTTTT‑‑TTTTTTT‑GT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATCAACC‑AAAACTATA‑TCAAAAAAATTaaaaaaaa                                                      <  2:2871861/128‑1 (MQ=255)
                                                                         tttttATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTT‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAATAAAATTA‑AAA‑TTTTGATCAACC‑AAAAATATA‑TAAAAAAAATTaaaaa                                                         >  2:901371/1‑128 (MQ=255)
                                                                          ttttATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GT‑‑‑TTTTTTTTT‑‑TTTTTTT‑GT‑‑‑A‑AAAAAAAAAGTA‑AGA‑TTTGGATAAACA‑AAAAAAATA‑TAAAAAAAAATaaaaaaa                                                       >  1:123452/1‑128 (MQ=255)
                                                                           tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTT‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAAAAAAATTA‑ATT‑TTTTGTTAAAAC‑AAAAATTTT‑TAAAAAAAATTaaaaaaa                                                       >  2:1937534/1‑128 (MQ=255)
                                                                            ttattaTACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTT‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAATAAAATTA‑AGA‑TTTTTATAAACA‑AAAAATATa‑taaaaaaaaataaaaaaaa                                                      >  2:2441008/1‑128 (MQ=255)
                                                                            ttattaTACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑G‑‑‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAAAAAAAATA‑ATA‑ATTTTTAAAAAC‑AAAAAAAAA‑TTAAAAAAATTaaaaaaaaaa                                                    >  2:1857141/1‑126 (MQ=255)
                                                                               ttatACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTT‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAATAAAATTA‑AGA‑TTTGGATAACCC‑AAAACTTTT‑TAAAAAAAATTAAAAAAAAtat                                                   >  2:6537539/1‑127 (MQ=255)
                                                                                 ataCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GT‑‑‑TTTTTTTTT‑‑TTTTTTT‑GT‑‑‑A‑AAAATAAAAATA‑ATA‑TATGGAAAAAAC‑AAAAATAAA‑TAAAAAAAAATAAAAAAAAaatttt                                                >  1:7096721/1‑128 (MQ=255)
                                                                                  taCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑T‑‑C‑‑TT‑GT‑‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑T‑AAAATTAAATTA‑ATA‑ATTTTTTAAACC‑AAAACTAAA‑TAAAAATAATTAAAAAAAAtattatt                                               >  1:3816741/1‑123 (MQ=255)
                                                                                    cTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑G‑‑‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAATAAAAGTA‑ATA‑TTTGGATAAACC‑AAAACAATT‑TAAAAAAAATTTAAAAAAAaagtttagtt                                            >  2:7176373/1‑128 (MQ=255)
                                                                                     ttATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTT‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑T‑AAAAAAAAAATA‑ATATTTTTTAAAAACCAAAAAATATA‑AAAAAAAATTAAAAAAAAAtattttt                                               >  1:2304783/1‑127 (MQ=255)
                                                                                      tATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTT‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAAAAAAATTA‑AAA‑TTTTTAAAAACC‑AAAAATAAT‑AAAAAAAAATTAAAAAAAAtttttttttt                                            >  1:2139219/1‑119 (MQ=255)
                                                                                         cAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTTT‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAATAAAAATA‑AAA‑TTTTTATAAACC‑AAAAAAATA‑ACAAAAAAATAAAAAAAAAtatataatatga                                          >  2:6463344/1‑118 (MQ=255)
                                                                                         cAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTT‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAAAAAAAGTA‑AAA‑TTTGGAAAAACA‑AAAAATATA‑TAAAAAAAATATAAAAAAAtattttatttaat                                         >  2:2776249/1‑125 (MQ=255)
                                                                                         cAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTT‑‑TTTTTTTTT‑‑TTTTTTT‑GT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATAAACC‑AAAACTATA‑TAAAAAAAATTAAAAAAAAttgtatagtttat                                         >  2:5658153/1‑125 (MQ=255)
                                                                                         cAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GT‑‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAAAAAAATTA‑AAT‑TTTGTATCAACA‑AAAAAAAAA‑AAAAAAAAATAAAAAAAAAtattttaattattt                                        >  1:843281/1‑124 (MQ=255)
                                                                                           aCATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTTTTTTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAAAAAAATAA‑AAA‑TTTTAAACCACA‑AAAAATAAA‑AAAAAAAAAATAAAAAAAAtatttaaattcat                                         >  2:3501229/1‑120 (MQ=255)
                                                                                             aTTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTTTTTTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAATAAAATTT‑ATA‑TTTGGAAAAACC‑AAAAATAAA‑AAAAAAAAATTAAAAAAAAtagtttttgtgattt                                       >  1:6862174/1‑119 (MQ=255)
                                                                                             aTTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTT‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAATAAAAGTA‑ATA‑TTTTGTTAAACC‑AAAAATAAT‑TAAAAAAAATAAAAAAAAAATTTTTATTTGAtttta                                     >  1:1707843/1‑127 (MQ=255)
                                                                                             aTTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GT‑‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑T‑AAAATAAATGTA‑ATA‑TTTGGATCAAAC‑AAAAAAATT‑TAAAAAAAATTAAAAAAAAaatttttattttttttaa                                    >  1:3046646/1‑116 (MQ=255)
                                                                                               tACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTTTTTTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAATAAAATAA‑ATT‑TTTTTATAAACC‑AAAAAAAAT‑AAAAAAAAATTAAAAAAAAttttttatttaatttaa                                     >  2:6829929/1‑121 (MQ=255)
                                                                                               tACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTTTTTTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAAAAAAATTA‑AAT‑TTTGTAAAAACA‑AAAAATA‑A‑TAAAAAAAAATAAAAAAAAaatttttagtttatttaa                                    >  2:838212/1‑116 (MQ=255)
                                                                                                 cAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTTT‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAATAAAAGTA‑AAA‑TTTTGTAAAACA‑AAAAATATA‑TAAAAAAAATTAAAAAAAAAAATTTTCTTTAGttaaaaa                                  >  1:3451556/1‑123 (MQ=255)
                                                                                                   aCGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTTTTTTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAATAAAATTA‑ATA‑TTTTGATAAAAC‑AAAAATATA‑TAAAAAAAATTAAAAAAAATAGTTTATTTTATTTTaaaaa                                 >  2:5947740/1‑127 (MQ=255)
                                                                                                   aCGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑G‑‑‑‑TTTTTTTTT‑‑TTTTTTT‑TTTTAA‑AAAAAAAAAAAA‑ATA‑TTTTGATAAACA‑AAAACATTA‑AAAAAAAAATTAAAAAAATAATTTTATTTAATTTTAAAAta                                >  2:1202463/1‑127 (MQ=255)
                                                                                                     gCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTT‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAATAAAAGTA‑ATA‑TTTGTATCACCC‑AAAAATATA‑TAAAAAAAATTAAAAAAAATTATTTAGTTTAGTTTAAAAtaatc                             >  2:3861016/1‑124 (MQ=255)
                                                                                                     gCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GT‑‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAATAAAATTA‑ATA‑TTTTAATAAACC‑AAAAAAAAT‑AAAAAAAAATTAAAAAAAAAATTTAATTTTAGttaaaaaaataaa                            >  1:5908041/1‑117 (MQ=255)
                                                                                                      cTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTT‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAAAAAAATTATAAT‑TTTGGATAAACA‑AAAAAT‑TT‑TAAAAAAAATTTAAAAAAAATTTTTATTTTAATTTCaaaatgtaa                            >  2:4611576/1‑122 (MQ=255)
                                                                                                      cTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTT‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAAAAAAATTA‑AAA‑TTTGGATAAAAA‑AAAAATATA‑AAAAAAAAATAAAAAAAAAAATTTTATTTAATTTTAAAAACTTCa                            >  1:6171504/1‑128 (MQ=255)
                                                                                                        ttCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTTT‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAATAAAAGTA‑ATA‑TTTGGATAAAAA‑AAAAATATA‑TAAAAAAAATTAAAAAAAAAATTTTATTTAAGttaaaaaaattcat                           >  2:5098353/1‑116 (MQ=255)
                                                                                                        ttCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTT‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAAAAAAATTT‑ATT‑TTTTGTTAAACC‑AAAACTATT‑AAAAAAAAATTAAAAAAAAAATTTTATTTGTTTTTAAAATATGAata                          >  2:6925266/1‑128 (MQ=255)
                                                                                                        ttCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GT‑‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAAAAAAAAAA‑AAA‑TTTTGATAAAAC‑AAAAATATA‑AAAAAAAAATTAAAAAAAAAAATTTATTTGAATTTaaaaaattaaaat                         >  1:1008898/1‑119 (MQ=255)
                                                                                                           aaaGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTT‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAATAAAATTA‑AAA‑TTTGGATAAACC‑AAAAATATA‑TCAAAAAAATTAAAAAAAATATTTTATTTTATTTTaaaaacacaaaatag                       >  2:5448392/1‑117 (MQ=255)
                                                                                                             aGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTTT‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAATAAAATTA‑ATA‑TTTTTATAAACA‑AAAAAATTA‑TAAAAAAAATTAAAAAAAATATTTTTTTTGAGTTTAAAAAATGAatattaa                      >  2:3654632/1‑125 (MQ=255)
                                                                                                               tgtA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTTT‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAAAAAAATTA‑ATA‑TTTGGATCAACC‑AAAAATATT‑TAAAAAAAAATAAAAAAAATAATTTATTTGATTTTAAAATAAGCAAATATAGt                    >  2:4772515/1‑128 (MQ=255)
                                                                                                                gtA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTT‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAATAAAATTA‑AAA‑TTTGTTTAAACA‑AAAAAAATA‑TAAAAAAAAATAAAAAAAAAATTATATTTAATTTTAAAATATGAaaataatttac                  >  1:4990223/1‑122 (MQ=255)
                                                                                                                 tA‑TTTTTTAG‑‑G‑‑C‑‑TT‑GTT‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAATAAAAGTA‑ATA‑TTTGGTTAAACC‑AAAAATATA‑TAAAAAAAATTAAAAAAAATATTTTATTTGTTTTTAAAATATGCataaatttttaa                 >  2:6208672/1‑122 (MQ=255)
                                                                                                                  a‑TTTTTTAG‑‑G‑‑C‑‑TT‑GT‑‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAATAAAATTA‑ATA‑TTTGTAAAAACC‑AAAAATATA‑TAAAAAAAATTAAAAAAAATATTTTATTTTATTTTAAAATATGCATATATATTAaaaa               >  1:6520360/1‑128 (MQ=255)
                                                                                                                         tAG‑‑G‑‑C‑‑TT‑GTT‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑T‑AAAATAAAATTT‑AAA‑TTTGGTACAACC‑AAAACTTAT‑TAAAAAAAATTAAAAAAAATATTTTTTTTGTGTTTAAAATCTGAATATATTTTAAAAAGGCAt          >  2:4528871/1‑128 (MQ=255)
                                                                                                                          aG‑‑G‑‑C‑‑TT‑G‑‑‑‑TTTTTTTTT‑‑TTTTTTT‑TT‑‑‑A‑AAAAAAAAATTA‑AAA‑TTTGGATAAACC‑AAAAATATA‑TCAAAAAAAAAAAAAAAAATATTTTATTTTATTTTCAAATATACATAAAATATAAAAAGTAATTTa       >  1:6054778/1‑128 (MQ=255)
                                                                                                                                         |                                                                                                                                           
TTTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAG‑‑G‑‑C‑‑TT‑G‑‑‑‑TTTTTTTTT‑‑TTTTTTT‑GT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATCAACC‑AAAACTATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATA  >  CP016816/203768‑204021

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑