BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	203,912	0	G	T	46.6%	689.4 / inf	891	intergenic (+296/+162)	JCVSYN2_00845/JCVSYN2_00850	lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand): ref base G (144/323); new base T (407/0); total (568/323)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 967 total aligned reads displayed.

AAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATCAACC‑AAAACTATATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTT  >  CP016816/203787‑204039

   aataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACTCTTTCAAATTGTATTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑t‑aaa                                                                                                                                >  1:6254232/1‑128 (MQ=255)

   aataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGATCTATGCTTTTTATTAAACATATCAACATAACAAAGCTTTCAAAGAGTATTTTTTA‑TA‑‑C‑‑‑TTG‑‑‑‑TATTTATT‑‑TTTTT‑‑TTTTAT‑‑‑a‑aa                                                                                                                                 >  2:2176141/1‑128 (MQ=255)

      aaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTCTGTTCTAGGTTTTTTATTATACTTAACAACATTAACACCCTTTAAAAGTTTATTTTTTA‑GG‑‑C‑‑‑TTT‑‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATa                                                                                                                             <  2:3137311/128‑1 (MQ=255)

       aaaatTTTTTATTTTAAGCCATTTTTAAAAAAGCCTTAGTTTTAGGCTTTTTATTATAATTATCAAAATTACAACGCTTTCAAATTTTTTTTTTTA‑GG‑‑G‑‑‑TTGT‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATa                                                                                                                             <  1:5566003/128‑1 (MQ=255)

         aatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTATAGGCTTTTTATTATACTAATCAACATTACAACGCTTTCAAATTGTAGATTTTA‑GC‑‑C‑‑‑TTG‑‑‑‑T‑TTTTTT‑‑TTTTTTGTTTTTT‑‑‑A‑AAAAtta                                                                                                                            >  1:5742802/1‑126 (MQ=255)

            ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAATAAAAg                                                                                                                         >  2:6465565/1‑128 (MQ=255)

            ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAATAAAAGTa                                                                                                                       >  2:3977376/1‑128 (MQ=255)

              ttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑T‑AAAATAAAAGTa                                                                                                                       >  2:5455725/1‑128 (MQ=255)

               tattttAACTCCATTTTTAAAAAACCCATTTTTCTATCCTTTTTTTTATAATTATAAAAAATAAAACGCTTTAAAAGTGTTTTTTTTT‑GG‑‑CTTTTTT‑‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAAGTa                                                                                                                       <  1:7189515/125‑1 (MQ=255)

                 aTTAAAATCAATTTTAAATAAATCATATGTTATTGGGTTTTTATTATAATTATTAAAATTAAAACCTTTTAAAATTTTATTTTTTA‑GGTTT‑‑‑TTT‑‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAAGTA‑AGa                                                                                                                   <  1:6418285/128‑1 (MQ=255)

                    tAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAATTA‑AGA‑tt                                                                                                                >  2:4110948/1‑128 (MQ=255)

                      aaGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTTTT‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAAGTA‑AGA‑ttt                                                                                                               >  1:6638612/1‑128 (MQ=255)

                       ataaaTTTTTAAAAAATCCTTTGTTTTTGGTTTTTTATTATACTTATAAAAATATCAACGCTTTAAAAGTGTTTTTTTTA‑TG‑‑C‑‑‑TTGTTT‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTgg                                                                                                             <  2:866926/124‑1 (MQ=255)

                        gCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAATTA‑ATA‑TTTGGAt                                                                                                           >  2:5518044/1‑128 (MQ=255)

                          cATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAAGTA‑AAA‑ttttgttc                                                                                                          >  2:6537918/1‑123 (MQ=255)

                           aTTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGT‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGAtaatc                                                                                                       >  2:3073090/1‑124 (MQ=255)

                           aTTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGT‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAAATA‑ATA‑tttttataaac                                                                                                       >  2:4885420/1‑120 (MQ=255)

                             ataataaaaaGCCTAGATCATAGGCTTTTTATTATACTTATCAACATTAAAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAAGTA‑TTA‑TTTGGTTCAGcc                                                                                                      >  2:4447604/6‑128 (MQ=255)

                                    aaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAATTA‑AGA‑TTTGGTTAAACC‑AAAAAta                                                                                              >  1:2433460/1‑128 (MQ=255)

                                     aaGCCTATTTTCTAGGCTTTTTATTATACTTATAAAAATTACAACGCTTTCAAATTTTTTTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATCAACC‑AAAACtat                                                                                             <  1:5790074/128‑1 (MQ=255)

                                       gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAATAAAAATA‑AGA‑TTTGGATCAACC‑AAAAcattat                                                                                           >  1:3174450/1‑123 (MQ=255)

                                         cTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTT‑‑T‑‑‑A‑AAAATAAAAGTA‑ATA‑TTTGGTAAAACC‑AAAAATATTTaaaaaa                                                                                     >  2:5080967/1‑128 (MQ=255)

                                          tATGTTTTAGGGTTTTTATTATACTTATCAAAATTACAACTCTTTCAAATTGTTTTTTTTA‑GG‑‑C‑‑‑TTGT‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATCAACC‑AAAACTATATCaaa                                                                                       <  1:546420/128‑1 (MQ=255)

                                             gTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGT‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑ATAAAAAAAAAATA‑AAT‑TTTGTTTAAACC‑AAAACTATaaaaaaaa                                                                                     >  1:4709335/1‑128 (MQ=255)

                                              ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑T‑TTTTTTTATTTTT‑‑TTTTTT‑‑‑A‑AAAAAAAAATTA‑ATA‑TTTTAATAAAAC‑AAAAATATATAaaaaa‑a                                                                                   >  2:3860302/1‑128 (MQ=255)

                                              acatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑‑‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGAAAAAAC‑AAAAATATATCAAAAA‑AAtt                                                                                >  1:115989/4‑128 (MQ=255)

                                               tCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAAAAAAAATA‑ATA‑TTTTGA‑AAAAC‑AAAAAAATATaaaaaa‑aaa                                                                                 >  2:5248503/1‑127 (MQ=255)

                                               tCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAATTT‑ATA‑TTTTGATCAACC‑AAAACATTTTCaaaaa‑aa                                                                                  >  2:568338/1‑128 (MQ=255)

                                               tCTAGGCTGTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTTA‑‑A‑AAAAAAAAATTA‑ATA‑TTTGGCTCGCCC‑AAAACTATATCAAAAA‑AAt                                                                                 >  2:2764565/1‑128 (MQ=255)

                                               catAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAAAAAAATTT‑TTA‑TTTGTTTAAAAC‑AAAAATATATCaaaaa‑aa                                                                                  >  2:822118/3‑128 (MQ=255)

                                                atAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGT‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑T‑AAAATAAAATTA‑AAA‑TTTGAATCAAAC‑AAAACTAAAAAAAAAA‑AAtt                                                                                >  1:6181697/2‑128 (MQ=255)

                                                atAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGT‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAATAAAATTA‑ATC‑TTTGGAAAAACC‑AAAACATAAACAAAAA‑AAtt                                                                                >  2:7143033/2‑128 (MQ=255)

                                                  aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAATAAAATTA‑ATT‑TTTTTAAAAACC‑AAAAATATAAAAAAAA‑AATTa                                                                               >  1:2114607/1‑128 (MQ=255)

                                                  aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAAAAAAATAA‑ATA‑TTTTTATAAACA‑AAAAATAAAAAAAAAA‑AAtaa                                                                               >  2:1934839/1‑126 (MQ=255)

                                                  aGGCGTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑T‑AAAAAAAAATAA‑AAA‑TTAGGTTACACC‑AAAACTAAAGAAAAAA‑AAtat                                                                               >  1:6991374/1‑126 (MQ=255)

                                                         ttattaTACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAAAAAAAATA‑ATA‑ATTTTTAAAAAC‑AAAAAAAAATTAAAAA‑AATTaaaaaaaaaa                                                                      >  2:1857141/1‑126 (MQ=255)

                                                            ttataattataaAAATTAAAACTCTTTAAATTTTTTTTTTTTT‑GG‑‑G‑‑‑TTGTTT‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATCAACC‑AAAACTATATCAAAAA‑AATTAAAAAAAAta                                                                      <  1:855429/128‑1 (MQ=255)

                                                            ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAAAAAAATTA‑ATA‑TTTTGATAAAAA‑AAAAAAATATAAAAAA‑AATTaaaaaaaaaa                                                                      >  2:1036203/1‑126 (MQ=255)

                                                            ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑T‑AAAAAAAAAATATATA‑TTTTTGTAAAAC‑AAAACTATTTATAAAA‑AATTAAAAAAAAtt                                                                      >  1:500676/1‑127 (MQ=255)

                                                            ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAAAAAAATTA‑ATA‑TTTTGATCAACA‑AAAACAAAataaaaaa‑aaataaaaaaaaaaa                                                                     >  2:3774730/1‑125 (MQ=255)

                                                             tataCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTTTTAA‑AAAAAAAAAGTA‑AAA‑TTTTTATAAACC‑AAAAATATTTAAAAAA‑AATTTAAAAAAAtat                                                                     >  2:2651847/1‑127 (MQ=255)

                                                              ataCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑A‑‑‑TTG‑‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTT‑‑T‑‑‑A‑AAAATAAAATTA‑AAT‑TTTTATTAAACA‑AAAAATATAAAAAAAA‑AATAAAAAAAAAaatattagt                                                               >  2:235441/1‑128 (MQ=255)

                                                                actatttaaCATTCAAACGCTTTCAAATTTTATTTTTTT‑GG‑‑G‑‑‑TTGT‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATCAACC‑AAAACTATATCAAAAA‑AATTAAAAAAAAtagtttag                                                                <  1:5924847/121‑1 (MQ=255)

                                                                aCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAATAAAATTA‑AAA‑TTTTGTAAAAAC‑AAAAAAATTAAAAAAA‑AAATAAAAAAAAtaatttt                                                                 >  2:6874489/1‑127 (MQ=255)

                                                                aCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGT‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAATAA‑ATT‑TTTGGAAAAAAA‑AAAAAAATTAAAAAAA‑AATTAAAAATAAaatttttg                                                                >  2:4579288/1‑126 (MQ=255)

                                                                 cTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑TAAATTAAATTA‑ATA‑TTTTGATAACAC‑AAAATTATATAAAAAA‑AATTaaaaaaaaattattat                                                                >  1:1764578/1‑120 (MQ=255)

                                                                  ttATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑T‑AAAAAAAAAATA‑ATATTTTTTAAAAACCAAAAAATATAAAAAAAA‑ATTAAAAAAAAAtattttt                                                                 >  1:2304783/1‑127 (MQ=255)

                                                                   tATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGA‑‑‑A‑AAAAAAAAATTA‑ATT‑TTTGGATAAACA‑AAAACAATAAAAAAAA‑AATTAAAAAAAAtattttattt                                                              >  2:4363477/1‑128 (MQ=255)

                                                                      cAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAAAAAAATTA‑AGA‑TTTTGATAAACC‑AAAAATATTTAAAAAA‑AAATAAAAAAAAtatttttattta                                                            >  1:7055389/1‑122 (MQ=255)

                                                                      cAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAATAAAATTA‑AGA‑TTTGGATAAAAC‑AAAAAAAAATAAAAAA‑AATTAAAAAAAAtattttattatat                                                           >  2:6098047/1‑122 (MQ=255)

                                                                          aTTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTTTT‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAATAAAATTT‑ATA‑TTTGGAAAAACC‑AAAAATAAAAAAAAAA‑AATTAAAAAAAAtagtttttgtgattt                                                         >  1:6862174/1‑119 (MQ=255)

                                                                          aTTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTTTT‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAATAAAATTA‑AAA‑TTTGGATAAACA‑AAAAATATAAAAAAAA‑AATTAAAAAAAAaagtttattttattt                                                         >  2:6431006/1‑123 (MQ=255)

                                                                          aTTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAATAAAATTA‑AAT‑TTTTGTAAAACA‑AAAAATA‑ATAAAAAATAAATAAAAAAAAAAGTTAAATTGAGttt                                                        >  2:747786/1‑128 (MQ=255)

                                                                          aTTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGT‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAATAAAATTA‑ATA‑TTTGGTTAAACC‑AAAAATATATAAAAAA‑AATTAAAAAAAAtattttagtttatttaaa                                                      >  2:5991292/1‑120 (MQ=255)

                                                                             aCAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAAAAAAATTA‑ATA‑TTTTGATAAACC‑AAAAAAATTTAAAAAA‑AAATAAAAAAAAAATTTTATTTTAATTTaaaa                                                    >  2:1114178/1‑128 (MQ=255)

                                                                             aCAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAAAAAAATTA‑ATA‑TTTGGAAAAACC‑AAAAAAATAAAAAAAA‑AAATAAAAAAAATATTTTATTAAATTTTCaaa                                                    >  1:6327201/1‑128 (MQ=255)

                                                                             aCAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑T‑AAAATAAATTTA‑AGA‑TTTGGATAAACA‑AAAAATTTTAAAAAAA‑ATTTAAAAAAAAtatttttgttttggtacaaagg                                                  >  1:1509632/1‑116 (MQ=255)

                                                                              cAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAATAAAAGTA‑AAA‑TTTTGTAAAACA‑AAAAATATATAAAAAA‑AATTAAAAAAAAAAATTTTCTTTAGttaaaaa                                                    >  1:3451556/1‑123 (MQ=255)

                                                                              aaaatttttAAAAGTTTTTTTTTTATGG‑‑T‑‑‑TTTT‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATCAACC‑AAAACTATATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAAt                                                   <  2:5614616/122‑1 (MQ=255)

                                                                                aCGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑T‑AAAATAAAATTA‑TAA‑TTTTTTTAAACC‑AAAAATATATAAAAAA‑AAATTAAAAAAATATTTTTATTGTTTTTAAAAta                                                  >  2:1631810/1‑127 (MQ=255)

                                                                                     ttCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGT‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAAAAAAAAAA‑AAA‑TTTTGATAAAAC‑AAAAATATAAAAAAAA‑AATTAAAAAAAAAAATTTATTTGAATTTaaaaaattaaaat                                           >  1:1008898/1‑119 (MQ=255)

                                                                                      tCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAATAAAATTA‑ATA‑TTTTTATAAAAC‑AAAAATATTAAAAAAA‑AAATAAAAAAAATATTTTAATTTATTTTaaataattaata                                            >  2:6665303/1‑119 (MQ=255)

                                                                                      tCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAATAAAAATA‑AGA‑TTTGTATCAACC‑AAAAATATTTCAAAAA‑AATTAAAAAAAATATTTTAGTTTAGTTTCaaaaataaataa                                           >  2:4276505/1‑119 (MQ=255)

                                                                                      tCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGT‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAATAAAATTA‑AGA‑TTTGGTACAACC‑AAAAAAATAAAAAAAA‑AATTAAAAAAAATAGTTTTGTTTAGTTAAAAATATGCatata                                          >  1:293338/1‑128 (MQ=255)

                                                                                      tCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAATAAAATTA‑ATA‑TTTGGATCAACC‑AAAAATATATAAAAAA‑AATTAAAAAAAATTTTTTAGTTGAGTTTAAAAAATGCataaat                                         >  2:6776357/1‑128 (MQ=255)

                                                                                         aaGTGTATTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATAAACC‑AAAACTATATCAAAAA‑AATTAAAAAAAATTGTTTATGTGAGTTTCAAAACTGAAGATATAGt                                      >  2:1326599/1‑128 (MQ=255)

                                                                                             gtATTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTTG‑‑T‑AAAAAAAAAATA‑AGA‑TTTTGATAAACC‑AAACATATTTAAAAAA‑AATTAAAAAAAATTCTATACTGTATTTTAAAAAATGCATAAATAGTaaa                                   >  2:5370787/1‑126 (MQ=255)

                                                                                                    ttA‑GG‑‑C‑‑‑TTG‑‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATAAACC‑AAAAATATTTAAAAAA‑AATTAAAAAAAATATTTTATTTTATTTTAAAATATGCAATTATATTAAAAAGTAAtt                           >  2:3309358/1‑128 (MQ=255)

                                                                                                     tA‑GG‑‑C‑‑‑TTGT‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAAGTA‑ATA‑TTTGGATCAACC‑AAATCTATATCATAAA‑AATTTATAAAAATATTTTAGTTTAGTTTCAAAAATTAAAATATTGTACaaaccatat                           >  2:4746514/1‑122 (MQ=255)

                                                                                                      a‑GG‑‑C‑‑‑TTGT‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATCAACC‑AAAACTATATAAAAAA‑AATTAAAAAAAATATTTTTGTTGATTTTAAAAAGTGCATATATATTAAAAAGTAAttt                          >  2:3428947/1‑128 (MQ=255)

                                                                                                        gg‑‑C‑‑‑TTGT‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAAAAAAAGTA‑ATA‑TTTGGAAAAACC‑AAAAATATATAAAAAA‑AATTAAAAAAAATATATAATTTAAGTTAAAAATATAAATATAAAGTAAAAAGTAAttaa                         >  2:589/1‑126 (MQ=255)

                                                                                                           ttttttttttttt‑tttttt‑‑ttttt‑‑ttttGT‑‑‑T‑TAATTTTTAGTA‑ATA‑TTTGGTTCAACC‑AAAACTATATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGa                              <  1:1365239/116‑1 (MQ=255)

                                                                                                            taggcttgtttt‑tttttt‑‑ttttt‑‑tttttt‑‑‑A‑AAAAAAAAATTT‑ATA‑TTTGGAAAAACA‑AAAAATTTTTAAAAAA‑AATTAAAAAAAATTTTTTTTTTTTGTTTAAAAAATGCAAATAAATTACAAAGaaa                             >  2:6237154/12‑128 (MQ=255)

                                                                                                               ttttttttt‑tttttt‑‑ttttt‑‑ttttGT‑‑‑A‑AAATTAAAATTA‑ATA‑TTTGGATAATAA‑AAAAATATATTAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTAAAATCTGCATATATAGTACAAAGGAAttt                          <  1:4381004/120‑1 (MQ=255)

                                                                                                               ggcttgttt‑tttttt‑‑ttttt‑‑tttttt‑‑‑A‑AAAATAAAATTA‑ATA‑TTTGGTACAACC‑AAAAATATTTAAAAAA‑AAATAAAAAAAATATTTTATTTTATTTTAAAAAATTCATATAAATAAAAAATGAAttt                          >  2:2863889/9‑128 (MQ=255)

                                                                                                               ggcttgttt‑tttttt‑‑ttttt‑‑ttttGT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATCAACC‑AAAACTATATCAAAAA‑AATTAAAAAAAATATTTATGTTTATTTTAAAAACTGGATAATTATTACAAATCAAttt                          >  2:2464961/9‑128 (MQ=255)

                                                                                                                tttttttt‑tttttt‑‑ttttt‑‑ttttGT‑‑‑A‑AAATTAATAGTA‑AGA‑TTTGGATCAACC‑AAAACTATATCAAAAT‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa                         <  2:1757694/121‑1 (MQ=255)

                                                                                                                tttttttt‑tttttt‑‑ttttt‑‑ttttGT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATCAACA‑AAAACTATATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa                         <  2:7045568/121‑1 (MQ=255)

                                                                                                                 ttttttt‑tttttt‑‑ttttt‑‑ttttGT‑‑‑T‑AATATAATAGTA‑TGA‑TTTGGATCAACC‑AAAATTATATGAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                        <  1:4546947/122‑1 (MQ=255)

                                                                                                                 ttttttt‑tttttt‑‑ttttt‑‑ttttGT‑‑‑A‑AATATAAAAGTA‑AGA‑TTTGGATAAACC‑AAAAATATATAAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                        <  1:4175278/122‑1 (MQ=255)

                                                                                                                 ttttttt‑tttttt‑‑ttttt‑‑ttttGT‑‑‑A‑AAAATTAAAGTA‑AGA‑TTTGGATCAACA‑AAAACTATATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                        <  2:3686397/122‑1 (MQ=255)

                                                                                                                     gtt‑tttttt‑‑ttttt‑‑tttttt‑‑‑A‑AAAATAAAATTA‑ATA‑TTTGGAACAACC‑AAAACTTTTTAAAAAA‑AAATAAAAAAAATATTTTTGTTTAGTTTCAAAAAAGCAAAAATAATAAAAAAGAAATTAttaaa                    >  2:1485868/3‑124 (MQ=255)

                                                                                                                      tt‑tttttt‑‑ttttt‑‑tttttt‑‑‑A‑AAAAAAAAATTA‑AAA‑TTTGTAAAAACC‑AAAAAAAAAAAAAAAA‑AATTAAAAAAAATATTTTTTTTTATTTTAAAATATTCATATAATTTACAAATGAAATTAttttaa                   >  1:1669948/2‑123 (MQ=255)

                                                                                                                      tt‑tttttt‑‑ttttt‑‑ttttGT‑‑‑A‑AAATTAAAAGTA‑AGA‑TTTGGATCAACT‑AAAACTATATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAg                   <  1:6753959/127‑1 (MQ=255)

                                                                                                                       t‑tttttt‑‑ttttt‑‑ttttGT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATCAACC‑AAAACTATATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGa                  <  1:521547/128‑1 (MQ=255)

                                                                                                                         tttttt‑‑ttttt‑‑ttttGT‑‑‑T‑AAAATATATTTA‑AGA‑TTTTGATATACA‑AAAAATATATTAAAAA‑AATTAAAATAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                 <  1:607944/128‑1 (MQ=255)

                                                                                                                         tttttt‑‑ttttt‑‑ttttGT‑‑‑A‑AATATAAAAGTA‑AGA‑TTTGGATCAACC‑AAAACTATATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                 <  1:3736071/128‑1 (MQ=255)

                                                                                                                         tttttt‑‑ttttt‑‑ttttGT‑‑‑A‑AAAATAAAAGTA‑TGA‑TTTGGATCAACA‑AAAACTATATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                 <  1:3831933/128‑1 (MQ=255)

                                                                                                                          ttttt‑‑ttttt‑‑ttttGT‑‑‑A‑ATATTTATAGTA‑AGA‑TTTGGATAAAAA‑AATACTATATCAAAAA‑TATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGAATATATAGTACAAAGGAATTTATGATAGaaa                <  1:4848872/128‑1 (MQ=255)

                                                                                                                                  tttt‑‑tttttt‑‑‑A‑TTATTTAAAGTA‑AGA‑TTTGGATTAATC‑AATACTATATCAAAAA‑AATTAAAAATAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATg          <  1:77734/128‑1 (MQ=255)

                                                                                                                                   ttt‑‑tttttT‑‑‑A‑AAAATAAAATTA‑AGA‑TTTGGTTCAACC‑AAAAATATATAAAAAA‑AATTAAAAAAAATTGTTTTTTTGATTTTAAAATCTGAATATATTGTAAAAAGTAATATTTGAAAAAAAAAAAttt         >  2:357349/1‑126 (MQ=255)

                                                                                                                                   ttt‑‑ttttGT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTTGATCATAA‑AAAACTATATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATgg         <  1:2648231/128‑1 (MQ=255)

                                                                                                                                    tt‑‑ttttGT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATCAACC‑AAAAATATATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGa        <  1:5680247/128‑1 (MQ=255)

                                                                                                                                     t‑‑tttttT‑‑‑A‑AAAAAAAAAGTA‑ATA‑TTTGGATAAAAC‑AAAACTTAATAAAAAA‑AATTAAAAAAAATATTTTTGTTTTTTTTAAAATATGAATAATTATTAATAAAGATTTTATTATAGaaaaaaaatgat       >  1:3661951/1‑123 (MQ=255)

                                                                                                                                         ttttT‑‑‑A‑AAAATAAAATTA‑AGA‑TTTGGATAAACC‑AAAAATTTATAAAAAA‑AATTAAAAAAAATTGTTTTTTTTATTTTCAAATCTTCATATATATTACAAAGGAATTTATTATTGAAAAAAATGGATTa     >  2:5784255/1‑128 (MQ=255)

                                                                                                                                          ttGT‑‑‑A‑TAAATAATAGTA‑AGA‑TTTGGATCAATT‑AAAACTATATCAAAAA‑AATTATAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGTAATTTATGATAGAAAAAAATGGATTat    <  2:123452/128‑2 (MQ=255)

                                                                                                                                          ttGT‑‑‑A‑ATAATAAAAGTA‑AGA‑TTTGGATAAACC‑AAAACTATATAAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg    <  2:6966173/128‑1 (MQ=255)

                                                                                                                                          ttGT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATCAACC‑AAAACTATATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat    <  1:6537539/128‑2 (MQ=255)

                                                                                                                                          ttGT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATCAACC‑AAAACTATATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg    <  2:6328246/128‑1 (MQ=255)

                                                                                                                                           tGT‑‑‑A‑AAAATAAAAGTT‑AGA‑TTTGGATCAAAC‑AAAACTATATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGt   <  1:7116894/128‑1 (MQ=255)

AAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATCAACC‑AAAACTATATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTT  >  CP016816/203787‑204039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`