Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,9240GT37.0% 1173.6 / 250.1 1056intergenic (+308/+150)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base G (213/407);  new base T (338/26);  total (623/433)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1069 total aligned reads displayed.

AATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑‑CTTG‑‑‑‑T‑‑T‑TTTTTTTTTTTTTTGT‑‑‑A‑AAAATAAAAGT‑AAGATTTGGAT‑CAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTT  >  CP016816/203796‑204051
                                                                                                                                              |                                                                                                                                 
     ttaaTTTAAATCAATTTGTAAAAAATCCTATTTTATAGGCTTTTTATTATACTTATTAAAATTACAACGCTTTAAAATTTTATTTTTTAT‑G‑‑CTTG‑‑‑‑‑‑‑‑‑‑TTTTTTTTTTTTTGT‑‑‑A‑AAAATAAAAGT‑AAGAtt                                                                                                                           <  1:4326813/125‑1 (MQ=255)
     ttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑‑CTTGTT‑‑T‑‑T‑TTTTTTTTTTTTTTTT‑‑‑T‑AAAATAAAAGT‑a                                                                                                                                >  2:5455725/1‑128 (MQ=255)
           ttaataaaTTTGTTAAATATCATATGTTATTTGTTTTTTATTATAATTATTAAAATTAAAAATATTTAAAATTTTTTTTTTTAG‑G‑‑CTTT‑‑‑‑T‑‑T‑TTTTTTTTTTTTTTGT‑‑‑A‑AAAATAAAAGT‑AAGATTTgg                                                                                                                        <  2:2878682/121‑1 (MQ=255)
           tAAAG‑CATTTGTTAAAACTCCTTTGTTTATTGGTTTTTTTTATTCTTTTAAAAATTACAACGCTTTAAAATTGTATTTTTTTT‑G‑‑GTTGTT‑‑T‑‑T‑TTTTTTTTTTTTTTGT‑‑‑A‑AAAATAAAAGT‑AAGATTTg                                                                                                                         <  2:6670650/128‑1 (MQ=255)
              agacATTTTTAAAAAAGCATATTTTATAGTCTTTTTATTTTAATTTTAAAAATTAAAACGTTTTAAAAGTTTATTTTTTAG‑G‑‑CTTGT‑‑‑T‑‑T‑TTTTTTTTTTTTTTGT‑‑‑A‑AAAATAAAAGT‑AAGATTTGGAt                                                                                                                      <  2:1689843/125‑1 (MQ=255)
              acccATTTTTAAAAATACATATTTTATTGGTTTTTTATTATAATTATAAAAATTACAACGTTTTAAATTTTTTTTTTTTTG‑GGTTTTT‑‑‑‑T‑‑T‑TTTTTTTTTTTTTTGT‑‑‑A‑AAAATAAAAGT‑AAGATTTGGa                                                                                                                       <  1:6321887/126‑1 (MQ=255)
               gcaaTTTGTAAAAAATCATATTTTATATTTTTTTTTTTATTTTTTTCAATATTACATCGCTTTCAAAGTGTTTTTTTTAG‑G‑‑GTTGTT‑‑T‑‑T‑TTTTTTTTTTTTTTGT‑‑‑A‑AAAATAAAAGT‑AAGATTTGGAt                                                                                                                      <  2:1540676/125‑1 (MQ=255)
               gCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑‑CTTGTT‑‑T‑‑T‑TTTTTTTTTTTTTTGT‑‑‑A‑AAAATAAAATT‑AATATTTGGAt                                                                                                                      >  2:5518044/1‑128 (MQ=255)
                 cATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑‑CTTGTT‑‑T‑‑T‑TTTTTTTTTTTTTTTT‑‑‑A‑AAAATAAAATT‑AAGATTTGGAT‑Ca                                                                                                                   >  2:6574119/1‑128 (MQ=255)
                      gTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACACCTCTTTCAAAGTGTATTTTTTAG‑T‑‑CTTG‑‑‑‑TTGT‑TTTTTTTTTTTTTTTT‑‑‑A‑AAAATAAATGT‑AATATTTTGAT‑CAACaaa                                                                                                              >  1:6923343/1‑128 (MQ=255)
                      gTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑‑CTTGTT‑‑T‑‑T‑TTTTTTTTTTTTTTTT‑‑‑T‑AAAAAAATAGT‑TAGATTTGGTT‑GAACaaa                                                                                                              >  2:4533517/1‑128 (MQ=255)
                           aaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑‑CTTGTT‑‑T‑‑T‑TTTTTTTTTTTTTTTT‑‑‑T‑AAAAAAAAATT‑AAGATTTGGTA‑CAACCAAAAcat                                                                                                         >  1:1689630/1‑126 (MQ=255)
                             aGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑‑CTTG‑‑‑‑T‑‑T‑TTTTTTTTTTTTTT‑T‑‑‑A‑AAAATAAAATT‑AAGATTTTGAT‑AAACCAAAACaataaaa                                                                                                    >  1:2871861/1‑125 (MQ=255)
                                   tGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑‑CTTGTT‑‑T‑‑T‑TTTTTTTTTTTTTTTT‑‑‑A‑AAAAAAAATGT‑TATATTTGGAT‑CAACCAAAACAATAACaaaa                                                                                                 >  2:6508186/1‑128 (MQ=255)
                                    gTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑‑CTTGTT‑‑T‑‑T‑TTTTTTTTTTTTTTGT‑‑‑T‑AAAAAAAAAGT‑ATAATTTGGTT‑CAACCAAATCGTTTTCaaaaa                                                                                                >  2:3660270/1‑128 (MQ=255)
                                     ttatAGGCTTTTTATTATTATAATCATATTTAAAATTCTTTAAATGTGTTTTTTTTTG‑G‑‑GTTGGT‑‑T‑‑T‑TTTTTTTTTTTTTTGT‑‑‑A‑AAAATAAAAGT‑AAGATTTGGAT‑CAACCAAAACTATATCaaaaaa                                                                                               <  1:4760753/125‑1 (MQ=255)
                                     ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑‑CTTG‑‑‑‑T‑‑T‑TTTTTTTTTTTTTTGT‑‑‑A‑AAAAAAAAATT‑TAGATTTGGGT‑CAACCATAAATATATCAAAAAAAt                                                                                             >  1:487616/1‑128 (MQ=255)
                                     ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑‑ATTG‑‑‑‑T‑‑T‑TTTTTTTTTTTTTTTT‑‑‑A‑AAAAAAAAAAT‑AAAATTTTTATAAAAAAAAAAATATATAaaaaaat                                                                                              >  2:2012269/1‑127 (MQ=255)
                                     acatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑‑CTTG‑‑‑‑‑‑‑T‑TTTTTTTTTTTTTTGT‑‑‑A‑AAAATAAAAGT‑AAGATTTGGAA‑AAAACAAAAATATATCAAAAAAAtt                                                                                            >  1:115989/4‑128 (MQ=255)
                                      tCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑‑CTTGTT‑‑T‑‑T‑TTTTTTTTTTTTTTGT‑‑‑A‑AAAATAAAATT‑TATATTTTGAT‑CAACCAAAACATTTTCaaaaaaa                                                                                              >  2:568338/1‑128 (MQ=255)
                                      tCTAGGCTGTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑‑CTTG‑‑‑‑T‑‑T‑TTTTTTTTTTTTTTTTA‑‑A‑AAAAAAAAATT‑AATATTTGGCT‑CGCCCAAAACTATATCAAAAAAAt                                                                                             >  2:2764565/1‑128 (MQ=255)
                                      catAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑‑CTTGTT‑‑T‑‑T‑TTTTTTTTTTTTTTTT‑‑‑A‑AAAAAAAAATT‑TTTATTTGTTT‑AAAACAAAAATATATCaaaaaaa                                                                                              >  2:822118/3‑128 (MQ=255)
                                       cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑‑CTTGTTT‑T‑‑T‑TTTTTTTTTTTTTTTT‑‑‑A‑AAAATAAAATT‑AATATTTTAAA‑AAACAAAAAATATaaaaaaaaaa                                                                                              >  2:44344/1‑128 (MQ=255)
                                       cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑‑CTTGTT‑‑T‑‑T‑TTTTTTTTTTTTTTTT‑‑‑A‑AAAATAAAATA‑TATATTTTGAT‑GAACAAAAAATATATATAAAAAAt                                                                                             >  2:2254634/1‑128 (MQ=255)
                                        tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑‑CTTGTT‑‑T‑‑T‑TTTTTTTTTTTTTTTT‑‑‑A‑AAAAAAAAATT‑AATATTTTAAT‑CAACAAAATATATATaaaaaaaaat                                                                                            >  2:2361205/1‑126 (MQ=255)
                                        tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑‑CTTG‑‑‑‑T‑‑TATTTTTTTTTTTTTTTT‑‑‑A‑AAAATAAAAGT‑AAGATTTGGCT‑TAACCAAAACTTTATCAAAAAAATTa                                                                                           >  1:3574444/1‑128 (MQ=255)
                                                 tattattatTTTTAAAATTAAAACGCTTTTAAATTTTTTTTTTTAT‑G‑‑TTTT‑‑‑‑T‑‑T‑TTTTTTTTTTTTTTGT‑‑‑A‑AAAATAAAAGT‑AAGATTTGGAT‑CAACCAAAACTATATCAAAAAAATTAAAAAAAAtag                                                                                 <  2:888734/128‑1 (MQ=255)
                                                   ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑‑CTTGTTT‑T‑‑T‑TTTTTTTTTTTTTTTT‑‑‑A‑AAAATAAAATT‑AAAATTTGTAT‑AAACCAAAAATATTACAAAAAAATTAAAAAAAAta                                                                                  >  2:2485429/1‑128 (MQ=255)
                                                   ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑‑CTTGTTT‑T‑‑T‑TTTTTTTTTTTTTTTT‑‑‑A‑AAAATAAAAGT‑AAAATTTTTTT‑AAACCAAAAATATAtaaaaaaaattaaaaaaaatt                                                                                  >  2:5402404/1‑127 (MQ=255)
                                                   ttatACTTATCAAAATTAAAACTCTTTTAATTTGTATTTTTTAT‑G‑‑CTTGTT‑‑T‑‑T‑TTTTTTTTTTTTTTGT‑‑‑A‑AAAATAAAAGT‑AAGATTTGGAT‑CAACCAAAACTATATCAAAAAAATTAAAAAAAAtag                                                                                 <  1:2236861/128‑1 (MQ=255)
                                                    tataCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑‑CTTGTTT‑T‑‑T‑TTTTTTTTTTTTTTTT‑‑‑A‑AAAATAAAATT‑AATATTTGGAT‑CAACAAAAAATATttaaaaaaaattaaaaaaaaatt                                                                                 >  2:1893841/1‑125 (MQ=255)
                                                    tataCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑‑CTTG‑‑‑‑T‑‑T‑TTTTTTTTTTTTTTTTTTAA‑AAAAAAAAAGT‑AAAATTTTTAT‑AAACCAAAAATATTTAAAAAAAATTTAAAAAAAtat                                                                                 >  2:2651847/1‑127 (MQ=255)
                                                      taCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑‑CTTGTTTTT‑‑T‑TTTTTTTTTTTTTTTT‑‑‑A‑AAAATAAAAAT‑AATATTTTGAA‑AAAAAAAAAAAATATAAaaaaaaataaaaaaaataat                                                                                >  2:3978866/1‑126 (MQ=255)
                                                         ttATAAACATTACAACGCTTTCAAAGTTTTTTTTTTTG‑G‑‑GTTGT‑‑‑T‑‑T‑TTTTTTTTTTTTTTGT‑‑‑A‑AAAATAAAAGT‑AAGATTTGGAT‑CAACCAAAACTATATCAAAAAAATTAAAAAAAAtagtttagtt                                                                          <  2:6434186/128‑1 (MQ=255)
                                                          tATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑‑CTTGT‑‑‑T‑‑T‑TTTTTTTTTTTTTTTT‑‑‑A‑AAAAAAAAATT‑AATATTTGGAA‑AAACCAAAAATATATAAAAAAAATTAAAAAAAAAATTTTAATTg                                                                         >  1:2361621/1‑128 (MQ=255)
                                                           aTCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑‑CTTGTTT‑T‑‑T‑TTTTTTTTTTTTTTTT‑‑‑A‑AAAAAAAAAATAAATTTTTGGAA‑AAACAAAAATATTAAAAAAAAAATTaaaaaaaaatttttttt                                                                           >  2:3733251/1‑119 (MQ=255)
                                                           aTCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑‑CTTG‑‑‑‑T‑‑T‑TTTTTTTTTTTTTTTT‑‑‑A‑AAAATAAAAAT‑AAAATTTGTAT‑CAACCAAAAATAATTAAAAAAAATTAAAAAAAAtagttttttttat                                                                       >  2:5104564/1‑121 (MQ=255)
                                                            tgaaacttACAACTCTTTCTAATTTTTTTTTTTTG‑G‑‑CTTGTT‑‑T‑‑T‑TTTTTTTTTTTTTTGT‑‑‑A‑AAAATAAAAGT‑AAGATTTGGAT‑CAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGa                                                                        <  1:5806017/122‑1 (MQ=255)
                                                             cAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑‑CTTGTTTTT‑‑T‑TTTTTTTTTTTTTTTT‑‑‑A‑AAAATAAAATT‑AATTTTTGGTT‑AAAAAAAAAAAAATTAAAAAAAATTAAAAAAAAAATTTTATTTg                                                                         >  2:5794838/1‑128 (MQ=255)
                                                               aCATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑‑CTTGTTTTT‑‑T‑TTTTTTTTTTTTTTTT‑‑‑A‑AAAAAAAAATA‑AAAATTTTAAA‑CCACAAAAAATAAAAAAAAAAAAATAAAAAAAAtatttaaattcat                                                                       >  2:3501229/1‑120 (MQ=255)
                                                                  ttACAACGCTTTCAAAGTGTATTTTTTAG‑G‑‑CTTGT‑‑‑T‑‑T‑TTTTTTTTTTTTTTTT‑‑‑ATAAAATAAAAGA‑AAAATTAGGAA‑AAACCAAACATAAATCAAAAAAATAAAAAAAAAtagttaagttatcgatct                                                                  >  2:6165145/1‑120 (MQ=255)
                                                                   tACAACGCTTTCAAAGTGTATTTTTTAG‑G‑‑CTTGT‑‑‑T‑‑T‑TTTTTTTTTTTTTTTT‑‑‑A‑AAAAAAAAAGT‑AAGATTTTGAT‑AAAACAAAAATATATAAAAAAAATTAAAAAAAATAGTTTATTTTATTTTaaaa                                                                >  2:1424121/1‑128 (MQ=255)
                                                                    aCAACGCTTTCAAAGTGTATTTTTTAG‑G‑‑CTTG‑‑‑‑T‑‑T‑TTTTTTTTTTTTTTTT‑‑‑T‑AAAATAAATTT‑AAGATTTGGAT‑AAACAAAAAATTTTAAAAAAAATTTAAAAAAAAtatttttgttttggtacaaagg                                                              >  1:1509632/1‑116 (MQ=255)
                                                                     cAACGCTTTCAAAGTGTATTTTTTAG‑G‑‑CTTGTT‑‑T‑‑T‑TTTTTTTTTTTTTTTT‑‑‑A‑AAAAAAAAAAA‑AAATTTTTGAT‑CAACAAAAACTATAAAAAAAAAAATAAAAAAAAAAATTTACTTATGTATCAAAt                                                               >  2:6240151/1‑128 (MQ=255)
                                                                      aaatcTTTTAAATTGTATTTTTTAC‑G‑‑‑TTT‑‑‑‑T‑‑T‑TTTTTTTTTTTTTTGT‑‑‑A‑AAAATAAAAGT‑AAGATTTGGAT‑CAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGc                                                           <  2:1774735/124‑1 (MQ=255)
                                                                       aCGCTTTCAAAGTGTATTTTTTAG‑G‑‑CTTGTTTTT‑‑T‑TTTTTTTTTTTTTTTT‑‑‑A‑AAAATAAAATT‑AATATTTTGAT‑AAAACAAAAATATATAAAAAAAATTAAAAAAAATAGTTTATTTTATTTTaaaaa                                                               >  2:5947740/1‑127 (MQ=255)
                                                                       aCGCTTTCAAAGTGTATTTTTTAG‑G‑‑CTTG‑‑‑‑T‑‑T‑TTTTTTTTTTTTTTGT‑‑‑A‑AAAATAAAAGT‑AAGATTTGGAT‑CAACCAAAAATATATAAAAAAAATTAAAAAAAATATTTTAGTTGAGTTTCAAATCTga                                                           >  1:6679726/1‑127 (MQ=255)
                                                                        cGCTTTAAATTTTTATATTTTAGTG‑‑TTTT‑‑‑‑T‑‑T‑TTTTTTTTTTTTTTGT‑‑‑A‑AAAATAAAAGT‑AAGATTTGGAT‑CAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGc                                                           <  1:5475497/128‑1 (MQ=255)
                                                                         gCTTTCAAAGTGTATTTTTTAG‑G‑‑CTTGTT‑‑T‑‑T‑TTTTTTTTTTTTTTGT‑‑‑A‑AAAATAAAAGT‑AATATTTGGTT‑CACCCCAAAATATTTCTATAAAATTAAAAAAATAATTTTTTTTGAGTTGAAAAGCTGc                                                           >  2:3176763/1‑128 (MQ=255)
                                                                            ttCAAAGTGTATTTTTTAG‑G‑‑CTTGTT‑‑T‑‑T‑TTTTTTTTTTTTTTGT‑‑‑A‑AAAAAAAAAAT‑AAGATTTTGAT‑AAACCAAAACTAAAAAAAAAAAATTAAAAAAAAAATTTTATTTTAGTTTAAAAAATGCaaa                                                        >  2:6358255/1‑126 (MQ=255)
                                                                            ttCAAAGTGTATTTTTTAG‑G‑‑CTTGT‑‑‑T‑‑T‑TTTTTTTTTTTTTTTT‑‑‑A‑AAAAAAAAAAA‑AAAATTTTGAT‑AAAACAAAAATATAAAAAAAAAATTAAAAAAAAAAATTTATTTGAATTTaaaaaattaaaat                                                       >  1:1008898/1‑119 (MQ=255)
                                                                            ttCAAAGTGTATTTTTTAG‑G‑‑CTTG‑‑‑‑T‑‑T‑TTTTTTTTTTTTTTTT‑‑‑A‑AAAATAAAAGT‑ATAATTTGTAA‑AAAACAAAAAAATTTAAAAAAAATAAAAAAAAAAATTTAATTTGAGTTTAAAAtattaaaaaa                                                      >  2:6876906/1‑119 (MQ=255)
                                                                            ttCAAAGTGTATTTTTTAG‑G‑‑CTTG‑‑‑‑T‑‑T‑TTTTTTTTTTTTTTTT‑‑‑A‑AAAAAAAAAATAAATAATTTGAA‑AACCCAAAAATAAAAAAAAAAAATTATAAAAAAAATTTTA‑TTTAGATTCaaaatatgcaaat                                                      >  2:3090827/1‑118 (MQ=255)
                                                                               aaaGTGTATTTTTTAG‑G‑‑CTTGTTT‑T‑‑T‑TTTTTTTTTTTTTTTT‑‑‑A‑AAAAAAAAATT‑AATATTTTGAA‑AAACCAAAAATATATAAAAAAAATTAAAAAAAAAATTTTTGTTTATTTTCAAAtataaaaaaa                                                      >  2:3366570/1‑119 (MQ=255)
                                                                                    gtATTTTTTAG‑G‑‑CTTGTTT‑T‑‑T‑TTTTTTTTTTTTTTGT‑‑‑A‑AAAAAAAAAGT‑TAGATTTTGAT‑CAACCAAAACAAAATAAAAAAAAATAAAAAAAAATATTTATTTGATTTTCAAATATGAatataaatta                                                 >  1:3699848/1‑123 (MQ=255)
                                                                                        tttttAG‑G‑‑CTTGT‑‑‑T‑‑T‑TTTTTTTTTTTTTTTT‑‑‑A‑AAAAAAAAATT‑AATATTTGGAT‑AAACAAAAAATTTATAAAAAAAATTAAAAAAAATATTTTATTTTATTTTAAAAAATGAAATTATAATAAAAAgg                                           >  2:4175278/1‑128 (MQ=255)
                                                                                           ttAG‑G‑‑CTTGTT‑‑T‑‑T‑TTTTTTTTTTTTTTTT‑‑‑A‑AAAATAAAATT‑AAGATTTTGAT‑CAACCAAAACTATAAAAAAAAAATTAAAAAAAAAATTTTAATTTATTTTCAAATGTGCATATATAGTAAAAAGTaa                                         >  1:5952165/1‑128 (MQ=255)
                                                                                           ttAG‑G‑‑CTTGTT‑‑T‑‑T‑TTTTTTTTTTTTTTTT‑‑‑A‑AAAAAAAAATT‑AAGATTTGGAT‑AAACCAAAACTATATAAAAAAAATTAAAAAAAATATTTTAATTAAGTTTAAAATATTAAAATATATTACaatgtaa                                         >  2:114447/1‑123 (MQ=255)
                                                                                               ttttttttttttt‑‑t‑ttttttttttttttGT‑‑‑T‑TAATTTTTAGT‑AATATTTGGTT‑CAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGa                                          <  1:1365239/116‑1 (MQ=255)
                                                                                                 ttttttttttt‑‑t‑ttttttttttttttGT‑‑‑A‑AAAATAAAAGT‑AAGATTTGGAT‑CAAACAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAt                                        <  1:901371/118‑1 (MQ=255)
                                                                                                     ttttttt‑‑t‑ttttttttttttttGT‑‑‑A‑AAAATTAAAGT‑AAGATTTGGAT‑AAACCAAAATTATATTAAAAAAATTATAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                    <  1:5028784/122‑1 (MQ=255)
                                                                                                       tgttt‑‑t‑tttttttttttttttt‑‑‑A‑AAAATAAAATA‑AAGATTTGTAA‑CAACCAAAAATATTTAAAAAAAATTAAAAAAAATTTTTTAGTTGATTTTAAAATATTAATATAATTAACAAAGTAAtttttta                                  >  1:1784789/5‑124 (MQ=255)
                                                                                                        gttt‑‑t‑tttttttttttttttt‑‑‑A‑AAAATAAAAGT‑AAAATTTTGAA‑AAACCAAAAAAATAAAAAAAAAATTAAAAAAAATATTTTAATTATGTTTAAAAAATAAATATATATTAAAATGTTATTTaatat                                 >  1:7199470/4‑124 (MQ=255)
                                                                                                        gttt‑‑t‑ttttttttttttttGT‑‑‑A‑AAAATAAAAGT‑AATTTTTGGTT‑AAACCAAAAATTTTTAAAAAAAATTAAAAAAAAATTTTTTTTTTATTTTAAAATATGATTATTTTGTAAAAAGTAATTtattat                                 >  2:5308790/4‑128 (MQ=255)
                                                                                                           t‑‑t‑tttttttttttttttt‑‑‑A‑AAAATAAAAGT‑AAGTTTTGGGT‑AAACCAAAAATATTTAAAAAAAATTAAAAAAAATATTTTTTTTTTTTTTAAAATATGAATAATAAATAAAAAATAATTTATGATata                              >  2:7160306/1‑126 (MQ=255)
                                                                                                              t‑tttttttttttttttT‑‑‑A‑AAAATAAAAGT‑AAAATTTGGAT‑CAACCAAAACAATAAAAAAAAAATTAAAAAAAATAGTTTATTTTATTTTGAAATCTTAATATATATTAAAAATGATATTATTATaaaa                             >  1:2058524/1‑128 (MQ=255)
                                                                                                              t‑ttttttttttttttGT‑‑‑A‑AAATTAAAAGT‑AAGATTTGGAT‑CAACCAAAACTATATCTAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                             <  1:7079126/128‑1 (MQ=255)
                                                                                                              t‑ttttttttttttttGT‑‑‑A‑AAAATAAAAGT‑AAGATTTGGAT‑CAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                             <  1:6160341/128‑1 (MQ=255)
                                                                                                              t‑ttttttttttttttGT‑‑‑A‑AAAATAAAAGT‑AAGATTTGGAT‑CAACCAAAACTATATAAAAAAAATTAAAAAAAATATTTTATTTTATTTTCAAATATGCAAATATATTACAAAGGAATTTAtttttgaa                             >  2:1052538/1‑121 (MQ=255)
                                                                                                                tttttttttttttttt‑‑‑T‑AAAATTAAATT‑TATTTTTTGTT‑TAAACAAAAATTTTTTAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaa                            <  1:381405/128‑1 (MQ=255)
                                                                                                                ttttttttttttttGT‑‑‑A‑AAAATAAAATT‑AAGATTTGGAA‑AAACCAAAACTAATAAAAAAAAAATAAAAAAAATATTTTTTTTTATTTTAAAAAATTAAAATATATTACAAAGAAatatattaaaataa                            >  1:5570156/1‑120 (MQ=255)
                                                                                                                ttttttttttttttGT‑‑‑A‑AAAATAAAAGT‑AAGATTTGTAT‑TAATAATAATTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaa                            <  1:4452138/128‑1 (MQ=255)
                                                                                                                ttttttttttttttGT‑‑‑A‑AAAATAAAAGT‑AAGATTTGGAT‑CAACCAAAACTATATCAAAAAAATTAAAAAAAATAGATTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaa                            <  1:6055906/128‑1 (MQ=255)
                                                                                                                  tttttttttttttt‑‑‑A‑AAAATAAAAGT‑AAGATTTGGAT‑CAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa                          <  1:5399462/128‑1 (MQ=255)
                                                                                                                  ttttttttttttGT‑‑‑A‑TATATAAATTT‑AAGATTTGGTT‑CATCCAAAACTATATCTAAAAAATTAAAATAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa                          <  2:3859667/128‑1 (MQ=255)
                                                                                                                   tttttttttttGT‑‑‑A‑AATATTAAAGT‑AATATTTGGAT‑AAAATAAAAATATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaa                         <  1:3323432/128‑1 (MQ=255)
                                                                                                                     tttttttttGT‑‑‑A‑AAAAAAAAATT‑AATATTTTGAT‑AAACCAAAAAAATATAAAAAAAATTAAAAAAAATAGTTTATTTGATTTTAAAATATGCATTTTTTTTACAAAGGATTTTATTATATAAAAAAAt                       >  2:5620878/1‑128 (MQ=255)
                                                                                                                       tttttttGT‑‑‑A‑ATAATATAAGT‑AAGATTTGGAT‑CAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATgg                     <  2:6794670/128‑1 (MQ=255)
                                                                                                                       tttttttGT‑‑‑A‑AAAATAAAAGT‑AAGATTTTGAT‑CATAAAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATgg                     <  1:2648231/128‑1 (MQ=255)
                                                                                                                         tttttGT‑‑‑A‑AAAATAAAAGT‑AAGATTTGGAT‑CAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAt                   <  1:7004492/128‑1 (MQ=255)
                                                                                                                           tttGT‑‑‑A‑AAAATAAAAGT‑AAGATTTGGAT‑CAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTa                 <  2:6018123/128‑1 (MQ=255)
                                                                                                                            ttGT‑‑‑A‑ATAATAAAAGT‑AAGATTTGGAT‑AAACCAAAACTATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg                <  2:6966173/128‑1 (MQ=255)
                                                                                                                            ttGT‑‑‑A‑AAAATAATATT‑AAGTTTTGGAT‑CAACCACTAGTATATAAAAAAAATTAAAAATAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAttct                <  2:7049313/128‑3 (MQ=255)
                                                                                                                            ttGT‑‑‑A‑AAAATAAAAGT‑AAGATTTGGAT‑CAACAAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat                <  1:6574119/128‑2 (MQ=255)
                                                                                                                            ttGT‑‑‑A‑AAAATAAAAGT‑AAGATTTGGAT‑CAACAAAAACTAAATCAAAAAAATTAAAAAAAATAGTTTAGATGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat                <  2:129314/128‑2 (MQ=255)
                                                                                                                             ttt‑‑‑a‑ataaTATAATT‑ATTATTTGGAT‑GAAACAAAACTATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGAATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGt               <  2:4779210/126‑1 (MQ=255)
                                                                                                                                ttgtatttaTAAAAGT‑AAGATTTGGAT‑CAACCAAAACTATATCAAAAAAATTAAATATATTAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg                <  1:7143033/120‑1 (MQ=255)
                                                                                                                                     aaaaTAAAAGT‑AAGATTTGGAT‑CAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATAAAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaact           <  1:6237154/128‑7 (MQ=255)
                                                                                                                                        aTAAAAGT‑AAGATTTTTAT‑AAAAAAAAAATATATCAAAAAAATTAATAAAAATAGTTTAGTTGAGTTTCAAATCTGAATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaactaat        <  2:435079/128‑10 (MQ=255)
                                                                                                                                        aTAAAAGT‑AAGATTTGGAT‑CAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTTAGTTTCAAATCTGCATATATAGTACAATGGAATTTATGATAGAAAAAAATGGATTATTTTATAAt        >  2:4988512/1‑128 (MQ=255)
                                                                                                                                        aTAAAAGT‑AAGATTTGGAT‑CAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAAt        <  1:6431006/128‑1 (MQ=255)
                                                                                                                                         tAATAGT‑AAGATTTGGAT‑CAACCTAAAATATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc       <  2:4629252/128‑1 (MQ=255)
                                                                                                                                         tAAAAGT‑AAGATTTGGAT‑CAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc       <  1:789261/128‑1 (MQ=255)
                                                                                                                                          attaGT‑AAGATTTGGAT‑CAACAAAAACTATATCAAAAAAATTATATAAAATAGTTTAGTTGAGTTTCAAATATGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc      <  1:4627773/125‑1 (MQ=255)
                                                                                                                                          aaaaGT‑AAGATTTGGAT‑CAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATatggc      >  1:3109602/1‑124 (MQ=255)
                                                                                                                                          aaaaGT‑AAGATTTGGAT‑CAACAAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTAAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc      <  1:5693516/128‑1 (MQ=255)
                                                                                                                                           taaGT‑AAGATTTGGAT‑CAAAAAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCa     <  1:3977593/127‑1 (MQ=255)
                                                                                                                                           aaaGT‑AAGATTTTTAT‑AAAAAAAAACTATATCAAAAAAATTATAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCa     <  1:6802479/128‑1 (MQ=255)
                                                                                                                                           aaaGT‑AAGATTTGGAT‑CAATCAAATCTATATTAAAATATTTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCa     <  1:576806/128‑1 (MQ=255)
                                                                                                                                            aaGT‑AAGATTTGGAT‑CAACCAAAAATATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt    <  2:747858/128‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                 
AATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑‑CTTG‑‑‑‑T‑‑T‑TTTTTTTTTTTTTTGT‑‑‑A‑AAAATAAAAGT‑AAGATTTGGAT‑CAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTT  >  CP016816/203796‑204051

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑