Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,9520CA35.8% 2120.3 / 312.1 1346intergenic (+336/+122)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base C (427/398);  new base A (355/105);  total (799/547)
Fisher's exact test for biased strand distribution p-value = 1.11e-19
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1409 total aligned reads displayed.

CTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑C‑TTG‑‑‑‑TTT‑TTTTTTTTTTTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGAT‑CAACCAAAACTA‑TATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAATTATTAAGCT  >  CP016816/203828‑204080
                                                                                                                                         |                                                                                                                                
cTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑C‑TTGTT‑‑TTT‑TTTTTTTTTTTTTTT‑‑‑AAAAATAAAATTAATTTTTGGTT‑AAACCAAAACTA‑TATCa                                                                                                                                 >  2:6434591/1‑128 (MQ=255)
    gTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑C‑TTGTTT‑TTT‑TTTTTTTTTTTTTGT‑‑‑AAAATTAAAAGTAATTTTTTGTT‑AAAACAAAAAAA‑TATAaaaa                                                                                                                              >  2:3867073/1‑128 (MQ=255)
     ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑A‑TTG‑‑‑‑TTT‑TTTTTTTTTTTTTTT‑‑‑AAAAAAAAAAATAAAATTTTTATAAAAAAAAAAATA‑TATAaaaaaat                                                                                                                           >  2:2012269/1‑127 (MQ=255)
      catAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑C‑TTGTTT‑TTT‑TTTTTTTTTTTTTTT‑‑‑AAAAATAAAATAAAGATTTTAAA‑AAACAAAAAATA‑AATAaaaaaa                                                                                                                            >  2:3467630/3‑128 (MQ=255)
       atAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑C‑TTGT‑‑‑TTT‑TTTTTTTTTTTTTTT‑‑‑AAAAATAAAATTAATTTTTTGAT‑CAACCAAAAATT‑TATCAAAAAAAtt                                                                                                                         >  2:3719765/2‑128 (MQ=255)
       atAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑C‑TTGT‑‑‑TTT‑TTTTTTTTTTTTTGT‑‑‑AAAAAAAAAATTAATTTTTGGAT‑AAACAAAAAATA‑TATAAAAAAAAtt                                                                                                                         >  2:5796845/2‑128 (MQ=255)
         aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑C‑TTGTT‑‑TTT‑TTTTTTTTTTTTTTT‑‑‑AAAAATAAAAATAATATTTGTAT‑AAAAAAAAAAT‑‑TATaaaaaaaaatta                                                                                                                       >  1:6414078/1‑124 (MQ=255)
         aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑C‑TTGTT‑‑TTT‑TTTTTTTTTTTTTGT‑‑‑AAAAATAAAATAAAAATTTTTTT‑AAACCAAAACTATTAAAAAAAAAAtt                                                                                                                         >  1:4351900/1‑128 (MQ=255)
           tttttttATAATATTTATAAAAATTAAAACTCTTTTAAATTGTTTTTTTTAGTGTT‑TTT‑‑‑‑TTT‑TTTTTTTTTTTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGAT‑CAACCAAAACTA‑TATCAAAAAAATTaaa                                                                                                                      <  1:5716663/126‑1 (MQ=255)
           gtttttttttATATTTTTAAAAATTTAAATGCTTTTAAATTGTTTTTTTTAG‑G‑C‑TTGTTT‑TTT‑TTTTTTTTTTTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGAT‑CAACCAAAACTA‑TATCAAAAAAATTaa                                                                                                                       <  1:6957276/126‑1 (MQ=255)
           gCTTTTTATTTTTATTTTAAAAATTAAAAAGTTTTTAAATTGTATTTTTTAG‑G‑CTTTT‑‑‑‑TTT‑TTTTTTTTTTTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGAT‑CAACCAAAACTA‑TATCAAAAAAATTaaaa                                                                                                                     <  2:7032652/128‑1 (MQ=255)
                ttattaTACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑C‑TTGTT‑‑TTT‑TTTTTTTTTTTTTTT‑‑‑AAAAATAAAATTAATATTTGGAT‑ACACCAAAACTA‑ATACTAAAAAATTaaaaaaaa                                                                                                                 >  1:3005551/1‑128 (MQ=255)
                ttattaTACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑C‑TTG‑‑‑‑TTTATTTTTTTTTTTTTTT‑‑‑AAAAAAAAAAATATCATATTGAA‑CAAACAAAACAA‑TTTCAAAAAAATTAAAAAAAAt                                                                                                                >  2:5693542/1‑128 (MQ=255)
                  attatACTTATAAAAATTACAAATATTTAAAAGTTTATTTTTTTT‑G‑CTTTT‑‑‑‑TTT‑TTTTTTTTTTTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGAT‑CAACCAAAACTA‑TATCAAAAAAATTAAAAAAAAtag                                                                                                              <  1:5568642/128‑1 (MQ=255)
                   ttatACTTATCAAAATTAAAACTCTTTTAATTTGTATTTTTTAT‑G‑C‑TTGTT‑‑TTT‑TTTTTTTTTTTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGAT‑CAACCAAAACTA‑TATCAAAAAAATTAAAAAAAAtag                                                                                                              <  1:2236861/128‑1 (MQ=255)
                      taCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑C‑TTGTTT‑TTT‑TTTTTTTTTTTTTTT‑‑‑AAAAAAAAAAGTAAATTTTGTTA‑AAACAAAAAAAA‑AAAAaaaaaaaataaaaaaaattttt                                                                                                            >  1:5772361/1‑124 (MQ=255)
                      taCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑C‑TTGTT‑‑TTT‑TTTTTTTTTTTTTTT‑‑‑AAAAATAAAAATAAAATTTGGAT‑AAAAAAAAAAAA‑TTAAAAAAAAATTAAAAAAAAtaaatt                                                                                                           >  2:3323432/1‑124 (MQ=255)
                      taCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑C‑TTG‑‑‑‑TTT‑TTTTTTTTTTTTTTT‑‑‑AAAAA‑AAAAGTAATATTTTGAT‑AAACCAAAACTA‑TAAAAAAAAAGATAAAAAAAAtatttttta                                                                                                        >  1:4900362/1‑125 (MQ=255)
                       aCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑C‑TTGTTT‑TTT‑TTTTTTTTTTTTTGT‑‑‑AAAAATAAAAGTAAGATTTGTAT‑CAACCAAAAATA‑TAACAAAAAAATAAAAAAAAAaagttt                                                                                                           >  1:3253126/1‑128 (MQ=255)
                           aTCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑C‑TTGTT‑‑TTT‑TTTTTTTTTTTTTTT‑‑‑AAAAAAAAAAGTAATATTTTGAT‑AAACCAAAAATA‑TATAAAAAAAATTAAAAAAAAtattttattta                                                                                                      >  2:5399462/1‑127 (MQ=255)
                           aTCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑C‑TTGT‑‑‑TTT‑TTTTTTTTTTTTTTT‑‑‑AAAAATAAAATTAATATTTGGAT‑AAAACAAAACTA‑TATAAAAAAAATTAAAAAAAAtaatttaattta                                                                                                     >  2:7138611/1‑126 (MQ=255)
                           aTCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑C‑TTG‑‑‑‑TTT‑TTTTTTTTTTTTT‑T‑‑‑AAAAATAAAATTAATATTTTGAT‑AAACAAAAAATA‑ATAAAAAAAAATTAAAAAAAAtattttattttttg                                                                                                   >  1:2057619/1‑124 (MQ=255)
                             cAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑C‑TTGTTT‑TTT‑TTTTTTTTTTTTTTT‑‑‑AAAAATAAAATTAAAAATTTTAA‑AAACCAAAAATA‑ATTCAAAAAAATTAAAAAAAAaaatttatttta                                                                                                     >  1:6303779/1‑126 (MQ=255)
                                cATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑C‑TTGTT‑‑TTT‑TTTTTTTTTTTTTTT‑‑‑AAAAATAAAATTAATATTTTTAT‑AAACAAAAAATT‑ATTAAAAAAAATTAAAAAAAAAattttattttatttt                                                                                                 >  2:2851654/1‑128 (MQ=255)
                                 aTTACAACGCTTTCAGAGTGTATTTTTTAG‑G‑C‑TTGTTTTTTT‑TTTTTTTTTTTTTTT‑‑‑AAAAAATAAATTAAATTTTTTAA‑AAACAAAAACTA‑TATAAAAAAAATTAAAAAAAAtattttatttttttt                                                                                                  >  2:2718027/1‑123 (MQ=255)
                                   tACAACGCTTTCAAAGTGTATTTTTTAG‑G‑C‑TTGTT‑‑TTT‑TTTTTTTTTTTTTTT‑‑‑AAAAATAAAATTAAGTTTTGGAT‑AAAACAAAAATA‑TAAAAAAAAAATTAAAAAAAAtattttatttatatttaaa                                                                                              >  1:6211598/1‑119 (MQ=255)
                                     cAACGCTTTCAAAGTGTATTTTTTAG‑G‑C‑TTGTT‑‑TTT‑TTTTTTTTTTTTTTT‑‑‑AAAAATAAAATTAATATTTGGAT‑AAACAAAAAATA‑TATAAAAAAAATTAAAAAAAATATTTTATTTTAGTTAAAAAt                                                                                            >  2:4293180/1‑128 (MQ=255)
                                      aaatcTTTTAAATTGTATTTTTTAC‑G‑‑‑TTT‑‑‑‑TTT‑TTTTTTTTTTTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGAT‑CAACCAAAACTA‑TATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGc                                                                                        <  2:1774735/124‑1 (MQ=255)
                                      aaCGCTTTCAAAGTGTATTTTTTAG‑G‑C‑TTGT‑‑‑TTT‑TTTTTTTTTTTTTTT‑‑‑AAAAATAAAAGTAACATTTGGAA‑CAACCAAAACTA‑TTTAAAAAAAATTAAAAAAAATAGTTTAGTTGATTTTCAAATCt                                                                                          >  2:6535176/1‑128 (MQ=255)
                                       aCGCTTTCAAAGTGTATTTTTTAG‑G‑C‑TTG‑‑‑‑TTT‑TTTTTTTTTTTTTTTTTAAAAAAAAAAAAAAATATTTTGAT‑AAACAAAAACAT‑TAAAAAAAAAATTAAAAAAATAATTTTATTTAATTTTAAAAta                                                                                           >  2:1202463/1‑127 (MQ=255)
                                            ttCAAAGTGTATTTTTTAG‑G‑C‑TTGTTT‑TTT‑TTTTTTTTTTTTTTT‑‑‑AAAAATAAAAGTAATATTTGGAT‑AAAAAAAAAATA‑TATAAAAAAAATTAAAAAAAAAATTTTATTTAAGttaaaaaaattcat                                                                                      >  2:5098353/1‑116 (MQ=255)
                                            ttCAAAGTGTATTTTTTAG‑G‑C‑TTGTT‑‑TTT‑TTTTTTTTTTTTTGT‑‑‑AAAAAAAAAAGTAAGATTTGGAG‑CACCCAAAACTA‑TATAAAAAAAATTAAAAAAAATATTTTATTTGAGTTTAAAATCttaata                                                                                     >  2:5474226/1‑123 (MQ=255)
                                            ttCAAAGTGTATTTTTTAG‑G‑C‑TTGT‑‑‑TTT‑TTTTTTTTTTTTTTT‑‑‑AAAAAAAAAAAAAAAATTTTGAT‑AAAACAAAAATA‑TAAAAAAAAAATTAAAAAAAAAAATTTATTTGAATTTaaaaaattaaaat                                                                                    >  1:1008898/1‑119 (MQ=255)
                                            ttCAAAGTGTATTTTTTAG‑G‑C‑TTG‑‑‑‑TTT‑TTTTTTTTTTTTTTT‑‑‑AAAAATAAAATTAATATTTGGAT‑AAACCAAAAATA‑TATAAAAAAAATTAAAAAAAAATGTTTATTTTAGTTTaaaaaattaattat                                                                                   >  2:813817/1‑118 (MQ=255)
                                             tCAAAGTGTATTTTTTAG‑G‑C‑TTGTTT‑TTT‑TTTTTTTTTTTTTTT‑‑‑AAAAATAAAATTAATATTTTTAT‑AAAACAAAAATA‑TTAAAAAAAAAATAAAAAAAATATTTTAATTTATTTTaaataattaata                                                                                     >  2:6665303/1‑119 (MQ=255)
                                                aaGTGTATTTTTTAG‑G‑C‑TTGTTT‑TTT‑TTTTTTTTTTTTTTT‑‑‑AAAAAAAAAATTAAAATTTGGAT‑CAACCAAAAATA‑TATAAAAAAAATTAAAAAAAATAGTTTATTTTATTTTAAAATCTGCattaaa                                                                                  >  2:676097/1‑124 (MQ=255)
                                                 aGTGTATTTTTTAG‑G‑C‑TTGTT‑‑TTT‑TTTTTTTTTTTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGAT‑AAACCAAAACTA‑TATAAAAAAAATTAAAAAAAATATTTTAGTTTTGTTTAAAATATGAatattttg                                                                                >  2:5595102/1‑124 (MQ=255)
                                                      aTTTTTTAG‑G‑C‑TTG‑‑‑‑‑‑T‑TTTTTTTTTTTTTGT‑‑‑AAAAATAAAAGTAAAATTTGGAT‑CACCCAAAACTA‑TAACAAAAAAATTAAAAAAAATAGTTAAGTTTAGTTTCAATTCAGCAGATTTAGTAGAAAGGa                                                                       >  1:1722554/1‑128 (MQ=255)
                                                            tAG‑G‑C‑TTGTT‑‑TTT‑TTTTTTTTTTTTTTT‑‑‑TAAAATAAAATTTAAATTTGGTA‑CAACCAAAACTT‑ATTAAAAAAAATTAAAAAAAATATTTTTTTTGTGTTTAAAATCTGAATATATTTTAAAAAGGCAt                                                                     >  2:4528871/1‑128 (MQ=255)
                                                                taggcttgtttttt‑ttttttttttttttt‑‑‑AAAAAAAAAATTTATATTTGGAA‑AAACAAAAAATT‑TTTAAAAAAAATTAAAAAAAATTTTTTTTTTTTGTTTAAAAAATGCAAATAAATTACAAAGaaa                                                                      >  2:6237154/12‑128 (MQ=255)
                                                                   ttgtttttttt‑tttttttttttttGT‑‑‑AAAAATAAAAGTAAGATTTGGAT‑CAACCAAAACTA‑TATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                                                                   <  1:3357304/120‑1 (MQ=255)
                                                                   gtttttttttt‑tttttttttttttGT‑‑‑AAAAATAAAAGTAAGATTTGGAT‑CAACCAAAACTA‑TATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                                                                   <  2:3640735/120‑1 (MQ=255)
                                                                     ttttttttt‑tttttttttttttGT‑‑‑AAAAATAAAAGTAAGATTTGTAT‑AAATAAAAACTA‑TATATAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                                                 <  1:6023/122‑1 (MQ=255)
                                                                     ttttttttt‑tttttttttttttGT‑‑‑AAAAATAAAAGTAAGATTTGGAT‑CAAACAAAACTA‑TATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                                                 <  2:4772491/122‑1 (MQ=255)
                                                                        gttttt‑ttttttttttttttt‑‑‑AAAAATAAAATTAATATTTGGAT‑AAACCAAAAATA‑TATAAAAAAAATTAAAAAAAATAGTTTATTTTATTTTAAAATATTCATATATATTAAAATAAAATTTAttaa                                                              >  2:1098677/4‑125 (MQ=255)
                                                                           ttt‑ttttttttttttttt‑‑‑AAAAATAAAAGTAAGATTTGGAT‑CAACCAAAAATA‑TTTCAAAAAAATTAAAAAAAATTTTTTATTTGAGTTTCAAATCTGAATATATATTAAAAAGTAATTTATGTTAGa                                                           >  2:4407457/1‑128 (MQ=255)
                                                                            tt‑tttttttttttttGT‑‑‑AAAAATAAAAGTAATATTTGGAT‑AAAAAAAAACTA‑TATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                                                          <  1:5445915/128‑1 (MQ=255)
                                                                                     ttttttttT‑‑‑AAAAATAAAAGTAATATTTGGTT‑AAACCAAAACAA‑TAAAAAAAAAATTAAAAAAAAAATTTTATTTTTTTTTAAAAAATGAATATATTTTAAAAATGTATTTATTATATaaaaaaaata                                                  >  1:832190/1‑125 (MQ=255)
                                                                                       tttttGT‑‑‑AAAAATAAAAGTAAGATTTGGAT‑CAAACAAAACTA‑TATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAt                                                <  1:6750608/128‑1 (MQ=255)
                                                                                        ttttGT‑‑‑TAAATTAAAATTAAGATTTTGTT‑CAACCAAAATTA‑TATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAtt                                               <  1:3855609/128‑1 (MQ=255)
                                                                                         tttGT‑‑‑TAATATAAAAGTAAGATTTGGAT‑CAACAAAAACTA‑TATCTAAAAATTTAAATAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTa                                              <  2:6844934/128‑1 (MQ=255)
                                                                                          ttGT‑‑‑ATAAATAAAAGTAAGATTTGGAT‑CAACCAAAACTA‑TATTAAAAAAATTAAATAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat                                             <  2:2208837/128‑2 (MQ=255)
                                                                                          ttGT‑‑‑AAAAATTAAAGTAAGTTTTGGAT‑AAAACAAAACTA‑TATCAAAAAAATTAAAAATAATTGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat                                             <  1:769783/128‑2 (MQ=255)
                                                                                          ttGT‑‑‑AAAAATAAAAGTAAGATTTGGAT‑CAACCAAAACTA‑TATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg                                             <  2:6328246/128‑1 (MQ=255)
                                                                                             t‑‑‑AAAAATAATAGTAATTTTTGGAT‑AAAAAAAAAATA‑TATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTg                                          <  1:1913526/128‑1 (MQ=255)
                                                                                                tataaaTAAAAGTAAGATTTGTAT‑CAAGAATAACTA‑TATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTg                                          <  2:734639/125‑1 (MQ=255)
                                                                                                 aaaaaTAAATGTAAGATTTGGAT‑TATACAAAATTA‑TATATAAAAAATTAAATAATATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaac                                         <  1:2787439/128‑6 (MQ=255)
                                                                                                  taaaTAAAAGTAAGATTTGGAT‑CAATCAATATTA‑TATTAAAAAAATTAAATAAAATAGTTTAGTTGAGTTTCAAATATGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGAt                                        <  1:4092325/127‑1 (MQ=255)
                                                                                                    taTAAAAGTAAGATTTGGAT‑CAAACATAACTA‑TATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATaa                                      <  1:7085151/127‑1 (MQ=255)
                                                                                                     attataGTAAGATTTTGAT‑TATATATAACTA‑TATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCTAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAAt                                     <  2:3174450/123‑1 (MQ=255)
                                                                                                     aTAAAAGTAAGATTTGTAT‑TAAAAAAAACTA‑TATAAAAAAAATT‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                                    <  1:3123934/128‑1 (MQ=255)
                                                                                                      tAATAGTAAGATTTGGAT‑CAACCTAAAATA‑TATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                                    <  2:4629252/128‑1 (MQ=255)
                                                                                                       attaGTAAGATTTGGAT‑CAACAAAAACTA‑TATCAAAAAAATTATATAAAATAGTTTAGTTGAGTTTCAAATATGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                                   <  1:4627773/125‑1 (MQ=255)
                                                                                                       aaaaGTAAGATTTGGAT‑CAACCAAAACTA‑TATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                                   >  2:140069/1‑128 (MQ=255)
                                                                                                         aaGTAAGATTTGGAT‑CAACCAAAACTA‑TATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGAATATATAGTACAAAGGAATTTATGATAGAAAAAAAAGTATTAGTTTATAATCCAt                                 >  2:24651/1‑128 (MQ=255)
                                                                                                         aaGTAAGATTTGGAT‑CAACCAAAAATA‑TATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt                                 <  2:694240/128‑1 (MQ=255)
                                                                                                           gTAAGATTTGGAT‑CAACCAAAACTA‑TATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt                                 >  2:5977507/1‑126 (MQ=255)
                                                                                                            tAAGATTTGGAT‑CAACCAAAACTA‑TATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGTAATTTATGATATAAAAAAATGGATTAGATGATAATCCAtttt                              >  1:1569334/1‑128 (MQ=255)
                                                                                                             aaGATTTGGAT‑CAACCAAAACTA‑TATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttttt                             >  2:2541115/1‑128 (MQ=255)
                                                                                                             aaGATTTGGAT‑CAACCAAAACTA‑TATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttttt                             <  1:3719765/128‑1 (MQ=255)
                                                                                                             aaGATTTGGAT‑CAACCAAAACTA‑TATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttttt                             >  1:4459809/1‑128 (MQ=255)
                                                                                                              aGATTTGGAT‑CAACCAAAACTA‑TATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAATGGAATTTATGATAGAAAAAAATGTATTAGTTGATAATCAAtttttt                            >  1:612748/1‑128 (MQ=255)
                                                                                                               gATTTGGAT‑CAACCAAAACTA‑TATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                                    <  2:4090862/119‑1 (MQ=255)
                                                                                                               gATTTGGAT‑CAACCAAAACTA‑TATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTa                           >  1:6639449/1‑128 (MQ=255)
                                                                                                               gATTTGGAT‑AAACAAAAACTA‑TATTAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTa                           <  1:3660270/128‑1 (MQ=255)
                                                                                                                aTTTGGAT‑CAACCAAAACTA‑TATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGTAATTTATGATAGAAAAAAATGGATTAGTTGATAATCAATTTTTTaa                          >  1:1149722/1‑128 (MQ=255)
                                                                                                                   tGGAT‑CAACCAAAACTA‑TATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAAACTGCATATATAGTACAAATGATTTTATTATAGAAAAAAATTTATTAGTTAATAATCAATTATATAAttt                       >  1:3494535/1‑128 (MQ=255)
                                                                                                                      tattaaaatataCTA‑TATTAAAAAAATTATAAAATATAGTTTAGTTGAGTTTAAAATCTGCATATATAGTATATAGGAATTTATGATAGAAAAAAATTGATTAGTTGATAATCCATTTTTTAATTTTg                     <  1:2615368/117‑1 (MQ=255)
                                                                                                                           aCCAAAACTA‑TATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAtt                                               >  2:49094/1‑97 (MQ=255)
                                                                                                                           aCCAAAACTA‑TATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTttat                >  2:5249761/1‑128 (MQ=255)
                                                                                                                           aCCAAAACTA‑TATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTttat                >  1:5344843/1‑128 (MQ=255)
                                                                                                                            taaaatata‑tataAAAAAAATTATAAAAAATAGTTTAGTTGAGTTTAAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTttatt               <  2:2347388/121‑1 (MQ=255)
                                                                                                                            aaataatta‑taTCAAAAAAATTAAAAAAAATAGTTAAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTttatt               <  1:513422/121‑1 (MQ=255)
                                                                                                                            aaaaaaCTA‑TATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTttatt               <  1:7160416/126‑1 (MQ=255)
                                                                                                                             cAAAACTT‑TATCAAAAAAATTATAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTAAATAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTttatta              <  2:614340/128‑1 (MQ=255)
                                                                                                                             cAAAACTA‑TATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATTTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTttatta              <  1:6833178/128‑1 (MQ=255)
                                                                                                                              aaaaCTA‑TATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAGATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTaa             <  1:5922800/128‑1 (MQ=255)
                                                                                                                               aaaCTA‑TATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATTGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTaaa            >  1:5006858/1‑128 (MQ=255)
                                                                                                                               aaaCTA‑TATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTaaa            >  2:861181/1‑128 (MQ=255)
                                                                                                                                   ta‑taTCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAattat        >  1:146437/1‑128 (MQ=255)
                                                                                                                                    a‑tatCAAAAAAATTAATAAAAATAGTTGAGTTGATTTTCAAATCTGCATATATAGTACAATCGATTATATCAAAGAAAAAAATGGATTAGTTCATAATCAATATTTAAATTTTGTTTAATATattatt       >  1:2445748/1‑128 (MQ=255)
                                                                                                                                    a‑tatCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                                                          >  1:1294356/1‑77 (MQ=255)
                                                                                                                                    a‑tatCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAattatt       >  1:923577/1‑128 (MQ=255)
                                                                                                                                      tataAATAATATTAAATAATATAGTTTAGTTGAGTTTCATATATGAATATATAGTACATAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAAttatta      <  2:1669948/128‑1 (MQ=255)
                                                                                                                                      tatCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGTAAATTATGATAGAAAAAAATGGATTATTTGATAATCCATTTTTTAATTTTTTTTATTAAAttaata      >  1:4742368/1‑128 (MQ=255)
                                                                                                                                      tatCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAAttatta      >  2:3005879/1‑128 (MQ=255)
                                                                                                                                       atCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAATTATTaa     >  2:1523045/1‑128 (MQ=255)
                                                                                                                                       atCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTATTTAAGTTTGTTTATTAAATTATTaa     >  1:7017225/1‑128 (MQ=255)
                                                                                                                                        tCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATTATAGAAAAAAATGGATTAGTTGATAATCCATTTTATAATTTTGTTTATTAAATTAATAAg    >  1:6537647/1‑128 (MQ=255)
                                                                                                                                         cAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAATTATTAAGc   >  2:1906589/1‑128 (MQ=255)
                                                                                                                                         |                                                                                                                                
CTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑G‑C‑TTG‑‑‑‑TTT‑TTTTTTTTTTTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGAT‑CAACCAAAACTA‑TATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAATTATTAAGCT  >  CP016816/203828‑204080

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑