BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP016816	= 203895	1188 (0.280)	755 (0.160) +TTT	127/214	21.5	36.5%	intergenic (+279/+179)	JCVSYN2_00845/JCVSYN2_00850	lipoprotein/inorganic diphosphatase
*	?	CP016816	203896 =	1335 (0.280)	755 (0.160) +TTT	127/214	21.5	36.5%	intergenic (+280/+178)	JCVSYN2_00845/JCVSYN2_00850	lipoprotein/inorganic diphosphatase
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 2267 total aligned reads displayed.

TTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑TTTT‑TTTTTTTTTT‑TTGTAAAAATAAAAGTAA‑GATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAA  >  CP016816/203769‑204024

ttAATTTTTTTTATAATAAAAAATAAAAATTTTTCATTTAAAGCCTTTTGTAAAAAAGCCTATGTTCTAGTCTTTTTATTATTCTTATCAACATTACAACGCTTACAAAGTGTA‑TTTTTTAGG‑A‑‑‑TTG‑‑‑t                                                                                                                                     >  2:527795/1‑128 (MQ=255)

ttAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGTCTTTTTATTATACTTATCAAAATTACAACTCTTTCAAAGTGTA‑TTTTTTAGT‑C‑‑‑TTG‑‑‑t                                                                                                                                     >  2:1425916/1‑128 (MQ=255)

ttAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑t                                                                                                                                     >  2:2524990/1‑128 (MQ=255)

ttAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑t                                                                                                                                     >  2:4838668/1‑128 (MQ=255)

ttAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTACAAACTGTA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑t                                                                                                                                     >  1:3076237/1‑128 (MQ=255)

 tAATTTTTTTTATAAAAAAAAAAAAAAATTTTTCATTTTACTCCATTTGTAAAAAAGCCTATGTTTATTGCTTTTTATTATACTTATCAACATTACAACGCCTTCAAAGGGTA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑tt                                                                                                                                    <  2:5606346/128‑1 (MQ=255)

 tAATTTTTTTTAAAAAAAAAAAAAAAAATTTTTAATTTAAAGCAATTTTTAAAAAAGCCTATGTTCTAGGCTTTTTATTATAATTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑tt                                                                                                                                    <  1:1842748/128‑1 (MQ=255)

  aaattttttaATAAAAAAAAA‑AAAAATTTATAAATTAAAGCCATTTGTAAAAAAGCATATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑tttt                                                                                                                                  <  2:5450815/125‑1 (MQ=255)

       tttttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTATAGGCTTTTTATTATACTTATCAACATTAAAACGCTTACAAAGAGTA‑ATTTTTATG‑A‑‑‑TTG‑‑‑tttt‑tttt                                                                                                                             >  1:2395869/1‑128 (MQ=255)

        ttttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑tttt‑ttttt                                                                                                                            >  1:3899053/1‑128 (MQ=255)

        ttttATAAAAAAAAATAAAAATTTTTATTTTTAAGCCATTTTTAAAAAATTCTATGT‑‑TAGTCTTTTTATTATTCTTTTCAAAATTACAAAGCTTTCAAATTGTT‑TTTTTTAGG‑C‑‑‑ttt‑‑‑tttt‑ttttttt                                                                                                                          <  1:3533573/128‑1 (MQ=255)

         tttAT‑AAAAAAAATTAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATAACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑tttt‑ttttttt                                                                                                                          >  2:6851816/1‑128 (MQ=255)

             aaaaaaaaaaTATAAATTTTTAATTTTAATAATTTTTTAAAAAATCTTATTTTTTATTCTTTTTTTTTTTATTATAAAAATTAAAAAGCTTTATAATTTTT‑TTTTTTTTG‑t‑‑‑ttt‑‑‑tttt‑tttttttttt                                                                                                                       <  1:6049752/127‑1 (MQ=255)

                  aaaattaaaaatTTTTACTTTAAAGCCATTTGCAAAAAATCCTATGTTCTAGGCTTTTTATTATACTTTTCAACATTACAAAGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑tttt‑tttttttttt‑tttgt                                                                                                                 <  1:9394020/128‑4 (MQ=255)

                  aaaaataaaaatTTTTCATTTAAAGCCATTTTTAAAAAATCCTATTTTCTATGCTTTTTTTTATTATTATCAACATTAAAAAGCTTTAAAAGTGTT‑TTTTTTAGG‑C‑‑‑TTG‑‑‑tttt‑tttttttttt‑ttttg                                                                                                                 <  2:3430247/128‑4 (MQ=255)

                    aaaaaaaaatTTTTACAATAAACCAATTTTTAAAAAAGTCTATTTTCTAGTCTTTTTTTTATAATTATAAAAAATACAACCCTTTCAAATTGTT‑TTTTTTTGG‑G‑‑‑TTG‑‑‑tttt‑tttttttttt‑tttgtaa                                                                                                               <  1:3238268/128‑6 (MQ=255)

                     aataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑TTTT‑TTTTTTTTTT‑TTTTtaaa                                                                                                              >  2:7037149/1‑128 (MQ=255)

                      ataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGTCTTTTTATTATACTTATAATCATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑tttt‑tttttttttt‑ttaaaaata                                                                                                             >  1:5440377/1‑121 (MQ=255)

                        ataaatTTTTAATTTAAACTCTTTTTTTAAAATTCCTTTTTTTTATGTTTTTTTTTTTAATTTTAAAAATTAAAAAGCTTTCAAA‑TGTT‑TTTTTTTTG‑G‑‑‑TTT‑‑‑GTTT‑TTTTTTTTTT‑TTGTAAAAATaa                                                                                                          <  1:9708769/126‑1 (MQ=255)

                        aaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTT‑TTTTTTTTTT‑TTGTAAAAAt                                                                                                            >  2:893385/1‑128 (MQ=255)

                         aaaatTTTTTATTTTAATCAATTTTTAAAAAATCATTTTTTTTTTGTTTTTTATTTTAATTTTAAAAATTAAAACGCTTTAAAATTTTA‑TTTTTTAGGTT‑‑‑TTT‑‑‑TTTT‑TTTTTTTTTT‑TTGTAAAAATa                                                                                                           <  1:4478541/128‑1 (MQ=255)

                         aaaatTTTTCATTTTAATCCATTTGTAAAAAACCCTATGTTCTTTGCGTTTTTTTATAATTATAAAAAATAAAACGCTTTAAAAGTGTT‑TTTTTTTGG‑G‑‑‑TTGT‑‑TTTT‑TTTTTTTTTT‑TTGTAAAAATa                                                                                                           <  1:2645554/128‑1 (MQ=255)

                         aaaatTTTTCATTAAAATCCAATTTTAAAAAAGCCTATTTTCTATGCTTTTTATTATACATATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTT‑TTTTTTTTTT‑TTGTAAAAATa                                                                                                           <  1:8313011/128‑1 (MQ=255)

                         aaaatTTTTAATTTAAATATATTTTTAAAAAATAATATTTTATATTTTTTTTATTATAATTATAAAAATTAAAACTCTTTCAAATTTTA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTT‑TTTTTTTTTT‑TTGTAAAAATa                                                                                                           <  2:62729/128‑1 (MQ=255)

                         aaaaaTTTTAATTTAAATCCAATTTTTAAAAAGCCTTATTTATACGGTTTTTTATATAATTATAAACATTAAAAAGCTTTCAAATTTTA‑TTTTTTTGG‑G‑‑‑TTGT‑‑TTTT‑TTTTTTTTTT‑TTGTAAAAATa                                                                                                           <  1:9114204/128‑1 (MQ=255)

                          aaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑TTTT‑TTTTTTTTTT‑TTaaaaaaaaaag                                                                                                         >  1:9834952/1‑127 (MQ=255)

                           aatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑TTTT‑TTTGTTTTTA‑TTTTTTAAATaaaa                                                                                                        >  1:7342690/1‑128 (MQ=255)

                              ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTGTT‑TTTT‑TTTTTTTTTT‑TTTTAAAAATaaaat                                                                                                       >  2:2990221/1‑127 (MQ=255)

                                   aTTTAAAGACAATTTTAAAAAATCATATGTTCTAGTCTTTTTTTTATTCTTTTAAAAATTAAAACGCTTTCAAATTTTA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTT‑TTTTTTTTTT‑TTGTAAAAATAAAAGTAA‑GAt                                                                                                <  2:9882456/128‑1 (MQ=255)

                                      tAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑TTTT‑TTTTTTTTTT‑TTTTTAAAATTaaattta‑aattttg                                                                                            >  2:2387286/1‑126 (MQ=255)

                                       atagtcATTTTTAAAAAATCATATTTTTTTTGTTTTTTATTTTTATTTTCAAAATTATAACGTTTTCAAAGTTTATTTTTTTTGG‑T‑‑‑TTT‑‑‑TTTT‑TTTTTTTTTT‑TTGTAAAAATAAAAGTAA‑GATTTgg                                                                                            <  2:6027830/123‑1 (MQ=255)

                                       aaaGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑TTTT‑TTTTTTTTTT‑TTTTTAAAATAaaattta‑aattttta                                                                                           >  1:8726461/1‑125 (MQ=255)

                                          cccATTTTTAAAAAATCCTATTTTCTATGCTTTTTATTATAATTATCAAAATTAAAACGCTTTCAAATTTTA‑TTTTTTAGG‑C‑‑‑TTGTT‑TTTT‑TTTTTTTTTT‑TTGTAAAAATAAAAGTAA‑GATTTGGAt                                                                                          <  1:677810/127‑1 (MQ=255)

                                             aTTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTT‑TTTTTTTTTT‑TTTTAAAAATAAAATTAA‑TAttttgttaaac                                                                                      >  1:5274527/1‑120 (MQ=255)

                                              tttGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGT‑C‑‑‑TTGTTTTTTT‑TTTTTTTTTT‑TTGTAAAAATTAAATTTA‑TATTTggttaaa                                                                                       >  2:5776637/1‑123 (MQ=255)

                                              tttGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTT‑TTTTTTTTTT‑TTGTAAAAATAAAAGTAA‑TATTTTGATCAccc                                                                                     >  2:7870152/1‑128 (MQ=255)

                                                tttataaaatacTAAGTTTTATGATTTTTATTATAATTATAAAATTTAAAAAGCTTTTAATTTTTA‑TTTTTTATG‑CTTTTTT‑‑‑TTTT‑TTTTTTTTTT‑TTGTAAAAATAAAAGTAA‑GATTTGGATCAAcc                                                                                     <  2:5141631/117‑1 (MQ=255)

                                                 gTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTGTT‑TTTT‑TTTTTTTTTT‑TTGTAAAAATAAAAGTAA‑GATTTGGATCAAACaa                                                                                   >  2:8224459/1‑128 (MQ=255)

                                                   aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTT‑TTTTTTTTTT‑TTTTAAAAATAAAAGTAA‑GATTTGGATCAACCatata                                                                                >  2:8094113/1‑124 (MQ=255)

                                                   aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑TTTT‑TTTTTTTTTT‑TTTTAAAAATAAAATTAA‑GATTTTGATAAACCaaaagt                                                                               >  1:4823870/1‑126 (MQ=255)

                                                     aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTT‑TTTTTTTTTT‑TTTTTAAAATAAAATTAA‑TATTTGGTTCACACAAAAAta                                                                              >  2:1253004/1‑128 (MQ=255)

                                                      aaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTT‑TTTTTTTTTT‑TTGTAAAAATAAAATTAA‑GATTTTTATCAAACAAAACtat                                                                             >  1:7902788/1‑128 (MQ=255)

                                                          tcTATGTTTTAGGCTTTTTATTATTTTTAGCATAATTATATAGGTTTAAATTTTTA‑TTTTTTTTG‑T‑‑‑TTGT‑‑TTTT‑TTTTTTTTTT‑TTGTAAAAATAAAAGTAA‑GTTTTGGATCAACCAAAACTATATCa                                                                         <  2:9218012/127‑1 (MQ=255)

                                                           cTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTT‑TTTTTTTTTT‑TTTTAAAAATAAATTTAA‑TATTTGGTTCAGCAAAAAATTTATaaa                                                                        >  2:908854/1‑128 (MQ=255)

                                                           cTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTT‑TTTTTTTTTT‑TTTTAAAAATAAAAGTAT‑TTTTTGGATCACCCaaaaaattataaa                                                                        >  2:4384333/1‑119 (MQ=255)

                                                            tATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTT‑TTTTTTTTTT‑TTTTAAAAATAAAATTAA‑AAATTTGATAAAACaaaaattttaaaaa                                                                       >  1:9983904/1‑118 (MQ=255)

                                                             agaacatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTT‑TTTTTTTTTT‑TTGTAAAAATAAAAGTTA‑GATTTGGTTCACCAAAAACTTGATCaaaa                                                                      >  2:8586328/7‑128 (MQ=255)

                                                               gTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTT‑TTTTTTTTTT‑TTGTAAAAATAAAATTAA‑GATTTGGATAAACCAAAACTATAaaaaaaaa                                                                    >  1:10015336/1‑128 (MQ=255)

                                                                ttttattttttttATTAAATTTATCAAAATTAAAACTTTTTAAAATTTTA‑TTTTTTAGG‑C‑‑‑TTGTTTTTTT‑TTTTTTTTTT‑TTGTAAAAATAAAAGTAA‑GATTTGGATCAACCAAAACTATATCaaaaa                                                                     <  2:10120068/120‑1 (MQ=255)

                                                                ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑TTTT‑TTTTTTTTTT‑TTGTATAAATAAAATTAG‑AATTTGTTTCAACCAAAACT‑TAATAAAAAAAtt                                                                 >  2:3208895/1‑128 (MQ=255)

                                                                     ggCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTT‑TTTTTTTTTT‑TTTTAAAAATAAAAGTAA‑TATTTGGATAAAACAAAACTAAATAAAAAAAAATaaa                                                              >  2:420351/1‑128 (MQ=255)

                                                                     ggCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTT‑TTTTTTTTTT‑TTGTAAAAATAAAATAAA‑GATTTTGATCAACCAAAAATATATAAAAAAAATTaaa                                                              >  2:7599952/1‑128 (MQ=255)

                                                                        ttttttttATATTTATAAAAATTAAAAAGGTTTTAAAGGTTT‑TTTTTTTGG‑T‑‑‑TGGT‑‑TTTT‑TTTTTTTTTT‑TTGTAAAAATAAAAGTAA‑GATTTGGATCAACCAAAACTATATCAAAAAAATTaaaaaa                                                           <  1:10146671/128‑1 (MQ=255)

                                                                        tttttATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑TTTT‑TTTTTTTTTTATTTTAAAAAAAAAATTTA‑TATTTGTATCAACCAAAAAAATATCAAAAAAATTataaaa                                                           >  1:2827578/1‑128 (MQ=255)

                                                                          tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTT‑TTTTTTTTTT‑TTTTAAAAAAAAAATTAA‑TATTTGTTTCAAAAAAAAATATATAAAAAAAATTaaaaaaaa                                                         >  2:2643721/1‑128 (MQ=255)

                                                                          tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑TTTT‑TTTTTTTTTT‑TTTTAAAAAAAAAAATAA‑‑ATTT‑TATAAAACAAAAAAATATaaaaaaaaaaaaaaaaaaaat                                                      >  1:10417842/1‑125 (MQ=255)

                                                                              ttatACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTT‑TTTTTTTTTT‑TTTTAAAAAAAAAAATAATAATTTGGA‑AAACACAAACTATATCAAAAAAATAaaaaaaaaatat                                                     >  1:2206647/1‑124 (MQ=255)

                                                                                ataCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTGTT‑TTTT‑TTTTTTTTTT‑TTTTAAAAATAAAATTAA‑AATTTTTTAAAACAAAAAATATAtaaaaaaaattaaaaaaaattttt                                                    >  1:1093009/1‑124 (MQ=255)

                                                                                 tatttATCAAAATTAAAACGATTTTAATTTGTA‑TTTTTTTGG‑T‑‑‑TTG‑‑‑‑‑TT‑TTTTTTTTTT‑TTGTAAAAATAAAAGTAA‑GATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAAtagtttagtt                                               <  1:5727383/125‑1 (MQ=255)

                                                                                  aattattaAAATTAAAACTATTTAAAATTTTT‑TTTTTTAGG‑C‑‑‑TTG‑‑‑TTTT‑TTTTTTTTTT‑TTGTAAAAATAAAAGTAA‑GATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAAtagtttagt                                                <  2:1121725/126‑1 (MQ=255)

                                                                                   ttataaaaatttACAA‑GCTTTGTATGTGTA‑TTTTTTTGT‑G‑‑‑TTGT‑‑TTTT‑TTTTTTTTTT‑TTGTAAAAATAAAAGTAA‑GATTTGGATCAACAAAAACTATATCAAAAAAATTAAAAAAAAtagtttagtt                                               <  1:10275052/118‑1 (MQ=255)

                                                                                   cTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑TTTTATTTTTTTTTT‑TTGTAAAAAAAAAATTAA‑TATTTGTATAAACAAAAAATAAATAAAAAAAATTAAAAAAAAtattttaat                                                >  2:8440743/1‑126 (MQ=255)

                                                                                     tATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑TTTT‑TTTTTTTTTT‑TT‑TAAAAATAAAATTAA‑GATTTGTATAAACAAAAAATATATAAAAAAATATAAAAAAAAtattttagttaat                                            >  2:9366279/1‑125 (MQ=255)

                                                                                      aTCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTT‑TTTTTTTTTT‑TTTTAAAAAAAAAATTAA‑ATTTTGTAAAAACAAAAAAAAAATAAAAAAAATTaaaaaaaaatttttttttta                                             >  2:8297480/1‑116 (MQ=255)

                                                                                       tCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTGTTTTTTT‑TTTTTTTTTT‑TTTTAAAAAAAAAATTAA‑GATTTGGAACAAAAAAAAATAATTCAAAAAAATTAAAAAAAAtatttttgttt                                              >  1:8181259/1‑127 (MQ=255)

                                                                                       tCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTGTT‑TTTT‑TTTTTTTTTT‑TTTTAAAAATAAAATTAA‑TATTTTGTTAAACAAAAACAAAATAAAAAAAAATAAAATAATTATTTTATTTgt                                             >  1:699149/1‑127 (MQ=255)

                                                                                         aaCATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTT‑TTTTTTTTTT‑TTGTAAAAATAAAAGTAA‑TATTTGTATAAACCAAAACTATATAAAAAAAATTAAAAAAAAaattttattttattt                                          >  1:8066835/1‑123 (MQ=255)

                                                                                           cATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTT‑TTTTTTTTTT‑TTTTAAAAATAAAAATAA‑AATTTTTATAAACAAAAAAAAAATAAAAAAAATTAAAAAAAAtaatttaatttatttaa                                        >  1:4121034/1‑121 (MQ=255)

                                                                                             ttACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTGTT‑TTTT‑TTTTTTTTTT‑TTTTAAAAATAAAATTAA‑TATTTGGATAAACCAAAAAAATAAAAAAAAAATTAAAAAAAAtatttttttttatttaaa                                       >  1:7682518/1‑116 (MQ=255)

                                                                                             ttACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTT‑TTTTTTTTTT‑TTTTAAAAATAAAATTAA‑TATTTTTATAAACCAAAACTATATAAAAAAAAATTAAAAAAATATTTTTGTTTATTTTaaa                                      >  2:10263257/1‑128 (MQ=255)

                                                                                              tACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTT‑TTTTTTTTTT‑TTGTAAAAATAAAATTAA‑GATTTTGTTAAACCAAAACTATATCAAAAAAATTAAAAAAAATATTTTAGTTGATTTTCaaa                                     >  2:1808365/1‑128 (MQ=255)

                                                                                                cAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑TTTT‑TTTTTTTTTT‑TTTAAAAAAAAAAATTAA‑TAATTTTATAAACAAAAAATATAAAAAAAAAAAAAAAAAAAAAATTTTATTTTATTTTAAAAtat                                  >  2:1577745/1‑126 (MQ=255)

                                                                                                 aaCGCTTTCAAAGTGTA‑‑TTTTTAGG‑C‑‑‑TTGT‑‑TTTT‑TTTTTTTTTT‑TTTTAAAAAAAAAAGTAA‑AATTTTATGAAACCAAAAATATTAAAAAAAAATTAAAAAAAATATTTTTTTTTAGTTTaaaaaaga                                 >  1:8875198/1‑124 (MQ=255)

                                                                                                  aCGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTGTTTTTTT‑TTTTTTTTTT‑TTGTAAAAATAAAATTAA‑TATTTGGTTCAACAAAAACTTAATAAAAAAAATTAAAAAAAAAATATTATTTGAAttaaaaaaa                                   >  2:6708497/1‑121 (MQ=255)

                                                                                                  aCGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTT‑TTTTTTTTTT‑TTTTAAAAATAAAAGTAA‑GATTTTGATAAAACAAAAAATAATAAAAAAAATAAAAAAAAATAGTTTAGTTTAGTTTAAAAtata                                 >  2:3793527/1‑125 (MQ=255)

                                                                                                  aCGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑TTTT‑TTTTTTTTTT‑TTGTAAAAATAAAAGTAA‑GATTTGGATCAACCAAAACAATATAAAAAAAATTAAAAAAAATAGTTTTGTTGATTTTAAAATATga                                >  1:8626637/1‑127 (MQ=255)

                                                                                                       ttCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTT‑TTTTTTTTTT‑TTTTTAAAATAAAATTAT‑GTTTTGGATAAACCAAAAATATTTCAAAAAATTTAAAAAAAATTTTTTTTTGGATTTTTAAATCTGTattt                            >  2:7234974/1‑126 (MQ=255)

                                                                                                       ttCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑‑TTT‑TTTTTTTTTT‑TTGTAAAAAAAAAATTAA‑AATTTGGATAAACAAAAAAAAAAACAAAAAAATAAAAAAAAAAAATTAATTTTATTTTAAAAtattcaaaaat                          >  1:8966978/1‑118 (MQ=255)

                                                                                                        tatatttgtT‑TTTTTTTTG‑T‑‑‑TTG‑‑‑‑TTT‑TTTTTTTTTT‑TTGTAAAAATAAAAGTAA‑GATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCAtatata                         <  1:955229/122‑1 (MQ=255)

                                                                                                          atattgtT‑TTTTTTAGG‑T‑‑‑TTT‑‑‑TTTT‑TTTTTTTTTT‑TTGTAAAAATAAAAGTAA‑GATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAg                        <  2:1979172/124‑1 (MQ=255)

                                                                                                           aaGTGTA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTT‑TTTTTTTTTT‑TTTTAAAAATAAAAGTAA‑TATTTGGATCAACCAAAACTATATAAAAAAAAATAAAAAAAAAATTTTAGTTGATTTTAAAAAAAGCAtatatat                        >  2:10430421/1‑127 (MQ=255)

                                                                                                           aaGTGTA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑TTTT‑TTTTTTTTTT‑TTGTAAAAATAAAATTAA‑AATTTGTATAAACCAAAAAAAAATAAAAAAATTTAAAAAAAATAGTTTATTTGATGTTCAAAAGTGAAtatatatt                       >  1:5120079/1‑126 (MQ=255)

                                                                                                              tttttttttttGGT‑T‑‑‑TTT‑‑‑TTTT‑TTTTTTTTTT‑TTGTAAAAATAAAAGTAA‑GATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTAc                     <  1:1253004/123‑1 (MQ=255)

                                                                                                               gtA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTT‑TTTTTTTTTT‑TTTTAAAAATAAAAGTAA‑TATTTTGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTATTTTAGATAAAAATCTTCATAAataataaa                    >  2:7433862/1‑126 (MQ=255)

                                                                                                               gtA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTT‑TTTTTTTTTT‑TTGTAAAAAAAAAATTAA‑TATTTTGTTCAACCAAAAATTATTAAAAAAAATTAAAAAAAATATTTTATTTGAGTTTCAAATGTGAatatattataaa                    >  2:960251/1‑122 (MQ=255)

                                                                                                                   ttttttAGG‑C‑‑‑TTGTTTTTTT‑TTTTTTTTTT‑TTTTAAAAAAAAAATTAA‑TATTTGGATAAACCAAAAATATATAAAAAAAATTAAAAAAAATAATTTTTTTTATTTACAAATAAGAATATATATTACaa                   >  2:2237598/1‑128 (MQ=255)

                                                                                                                   ttttttAGG‑C‑‑‑TTGTT‑TTTT‑TTTTTTTTTT‑TTTTAAAAAAAAAATTTA‑ATTTTTGATCACCAAAAAAAATAAAAAAAAAATTAAAAAAAAAATTTTATTTGATTTTAAAAACTTCAaatataaaaaaaa                  >  1:851306/1‑121 (MQ=255)

                                                                                                                     ttttAGG‑C‑‑‑TTGT‑‑TTTT‑TTTTTTTTTT‑TTGTAAAAATAAAAGTAA‑GATTTGGATCAACCAAAAATATATCAAAAAAATTAAAAAAAATAGTTTATTTGTGTTTAAAATGGGCAATTAAAGGACAAAggt               >  1:9270721/1‑127 (MQ=255)

                                                                                                                     ttttAGG‑C‑‑‑TTG‑‑‑TTTT‑TTTTTTTTTT‑TTTTAAAAATAAAATTAA‑TATTTGGATAAACCAAAAATTTATAAAAAAAATATAAAAAAATATTTTATTTTAGTTTCAAATATAAATATATATTAAAAAGGaa              >  2:2782181/1‑128 (MQ=255)

                                                                                                                     ttttAGG‑C‑‑‑TTG‑‑‑TTTT‑TTTTTTTTTT‑TTTTAAAAAAAAAAGTTA‑TAATTTGATACAAAAAAAAAAAATAAAAAAAAATAAAAAAAAAAATTTTTTTTAGTTTAAAATAAGAAAATAAATTAAAAAGGaa              >  2:9479070/1‑128 (MQ=255)

                                                                                                                       ttAGG‑C‑‑‑TTG‑‑‑TTTT‑TTTTTTTTTT‑TT‑TAAAAATAAAAGTAA‑TATTTGGATCAACCAAAACTATTTCAAAAAAATTAAAAAAAATATTTTAGTTGAGTTTCAAATATGAATTTATAGTACAAAGGAAatt           >  2:4624877/1‑128 (MQ=255)

                                                                                                                        tAGG‑C‑‑‑TTGT‑‑TTTT‑TTTTTTTTTT‑TTGTAAAAATAAAAGTAA‑GATTTGGATCAACCAAAAATTTATCAAAAAAATTAAAAAAAAATTTTTAGTTTAGTTTCAAATATCAATATATTTTAAAAAAGAAtt            >  2:8694835/1‑128 (MQ=255)

                                                                                                                         aGG‑C‑‑‑TTGT‑‑TTTT‑TTTTTTTTTT‑TTTTAAAAATAAAATTAA‑GATTTGGATCACCCAAAAATTTATAAAAAAAATTAAAAAAAAAATTTTATTTGATTTTAAAAATTGCATATATAGTACAAATGTAttt           >  1:647980/1‑128 (MQ=255)

                                                                                                                         aGG‑C‑‑‑TTGT‑‑TTTT‑TTTTTTTTTT‑TTGTAAAAAAAAAATTAA‑GATTTTGATAAACCAAAACTATTACAAAAAAATTAAAAAAAATATTTTTTTTGAGTTTAAAATAAGAATATATAGTAAAAAAGAAttt           >  2:652472/1‑128 (MQ=255)

                                                                                                                               tttttttttttt‑tttttttttt‑ttGTAAATTTAAAAGTTA‑GATTTGTATCAAACAAAACTATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt           <  2:3972865/120‑1 (MQ=255)

                                                                                                                                ttttttttttt‑tttttttttt‑ttGTAATAATAAAAGTAA‑GATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa          <  2:9754488/121‑1 (MQ=255)

                                                                                                                                 tttttttttt‑tttttttttt‑ttGTAATAATAAAAGTAA‑GATTTGGATCAAACAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt         <  2:3625088/122‑1 (MQ=255)

                                                                                                                                  ttgtttttt‑tttttttttt‑ttGTAAAAATAAAATTTA‑TATTTGTATAAACCAAAAATATTTAAAAAAAATTAAAAAAAATTTTTTATTTTATTTTAAAATATGAATATATATTACAAATGAATTTAtt        >  2:8783833/6‑127 (MQ=255)

                                                                                                                                      ttttt‑tttttttttt‑ttttAAAAAAAAAAGTAA‑AATTTGGAAAAACCAAAACAAAATCAAAAAAATTAAAAAAAAAATTTTAGTTTATATTCAAAAATACATATATAGAACAAAGGAAATTaatatat    >  1:1476725/2‑122 (MQ=255)

                                                                                                                                      ttttt‑tttttttttt‑ttGTAAAAATAAAAGTAA‑GATTTGGATCAAACAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAg    <  2:7961711/127‑1 (MQ=255)

TTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑TTTT‑TTTTTTTTTT‑TTGTAAAAATAAAAGTAA‑GATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAA  >  CP016816/203769‑204024

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.