Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816165,2750GT33.5% 4916.9 / inf 3714intergenic (+239/‑303)JCVSYN2_00665/JCVSYN2_00670tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser
Reads supporting (aligned to +/- strand):  ref base G (739/1523);  new base T (1037/102);  total (2089/1625)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 3816 total aligned reads displayed.

TCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTAT‑ATGCAAATTTTAAAAGAATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATA‑TTGTTAA‑AAGTAAT‑ACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAA  >  CP016816/165147‑165402
                                                                                                                                     |                                                                                                                                  
tcttaattttattaattattaatAAACAAAAAATATTATTTTTTTATTTATTTTTTTTAT‑ATTCAAATTTTTAAAAAATTAATTTTAAAATTTAAAAAATA‑TC‑‑‑TTTTTTTTTTTTTTTTTTATAA‑Tgg                                                                                                                                    <  2:9662069/119‑1 (MQ=255)
 cGCACTTTTATTTATTAGTAATAAACTAAAAATATTATTTTTTTAGATATTTTTTTTAT‑TTTCAAATTTTTAAAAAAATAATTTGAACTTTTAAAAAATA‑TC‑‑TTTTTTTTTTTTTTTTTTTATAA‑Tgg                                                                                                                                    <  1:9766987/128‑1 (MQ=255)
     cTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTAT‑ATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTTTTATAA‑TGTAAata                                                                                                                               >  2:2927295/1‑128 (MQ=255)
         tATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTAT‑ATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTTTTTTA‑TTTAAAAATaa                                                                                                                            >  1:10007984/1‑128 (MQ=255)
           tttattattAATAAAATAAAAATTTTTTATTTTTTTTTATTTTTTTTTT‑ATTTAAATTTTTAAAAAATTAATTTTTAATTTTAAAAAATT‑TC‑‑‑TTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAAtt                                                                                                                         <  1:10184708/125‑1 (MQ=255)
             tattttttataaaataaaaataTTTTTTTTTTTTTTATTTTTTTTTT‑ATTTAAATTTTTAAAAAATTAAATTTTAATTTTTAAAAATA‑TCT‑TTTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAAtt                                                                                                                         <  1:129662/118‑1 (MQ=255)
             aaTTATTAATAAAATAAAAAAATTATTTTTTTTTATTTTTTTTTTAT‑ATTCAAATTTTTAAAAAATTAATTTTAAATTTTAAAAAAAA‑TCT‑TTTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAAtt                                                                                                                         <  1:9087653/128‑1 (MQ=255)
               tttttaataaAATTAAAATTTTATATTTTTTTATTTTTTTTTTTT‑TTTTAAATTTTTTAAAAATTAATTTTAATATTTAAAAAATA‑TT‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTa                                                                                                                      <  1:6218729/124‑1 (MQ=255)
                tAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTAT‑ATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTTAAAAA‑TTGAAATAAAAAtttttg                                                                                                                     >  1:1969079/1‑126 (MQ=255)
                 aGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTAT‑ATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTTTATAA‑TTTAATTATAAAtttaata                                                                                                                    >  2:387278/1‑124 (MQ=255)
                  tttatataataaaatttTTATATTTTTATATATTTTTTTTTT‑ATTCTAATTTTTAAAAAATTAATTTTTAATTTTTAAAAATA‑TA‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGt                                                                                                                   <  1:9492223/119‑1 (MQ=255)
                   tAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTAT‑ATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTTTTTAATTGAAAATTTAATTTTTAgtt                                                                                                                   >  1:7377707/1‑126 (MQ=255)
                    tattaaataaaaataTTTTTTTTTTTTATATTTTTTTTAT‑TTTTAAATTTTTAAAAAATTTATTTTAAATTTTAAAAAATA‑TA‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTAt                                                                                                                 <  2:6095196/121‑1 (MQ=255)
                    aaGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTAT‑ATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTTTTATAA‑TGTAATTATAAATTTtatttatt                                                                                                                >  2:153914/1‑128 (MQ=255)
                         actaaaactaTTATCTTTTTAGATATTTTTTGTAT‑ATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTTTATTA‑TGAAAATATAAATTTTATTTAtttttt                                                                                                            >  2:8294077/1‑126 (MQ=255)
                           taaaactaTTATCTTTTTATATATTTTTTGTAT‑TTTTAAATTTTTAAATAATTAAATTTAAATTGTAAAAAATA‑‑‑‑‑TATTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTc                                                                                                        <  2:6949280/128‑1 (MQ=255)
                             aaactaTTATCTTTTTAGATATTTTTTGTAT‑ATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGTTATTTttttgtat                                                                                                       >  2:10258405/1‑126 (MQ=255)
                             aaaattttatttttttttttatttttttttT‑TTTTAAATTTTTTAAAAATTTATTTTTAATTTTTAAAAATT‑TT‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTc                                                                                                        <  1:5040921/122‑1 (MQ=255)
                             aaaataTTATTTTTTTTTTTATTTTTTTTTT‑ATGAAAATTTTTAAAAAATTAATTTTAAATTTTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTc                                                                                                        <  1:8097941/128‑1 (MQ=255)
                               aattatatttttttattttttTTTTTTTT‑TTTTAAATTTTTAAAAAATTAATTTTAAATTTTAAAAAATT‑G‑‑‑GTTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTaa                                                                                                     <  2:1879811/123‑1 (MQ=255)
                                ctaTTATCTTTTTAGATATTTTTTGTAT‑ATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTTTTATAA‑TGTAATTATAAATTTTATGTATTTTTTTTTATaat                                                                                                    >  2:3141059/1‑127 (MQ=255)
                                attttatatttttttatatttttTTTAT‑ATTCAAATTTTTAAAAAATTAATTTTAAATTGTAAAAAAT‑‑‑T‑‑TGTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGt                                                                                                   <  1:7941125/125‑1 (MQ=255)
                                attttatatttttatatttTTTTTTTAT‑ATTATAATTTTTAAAAAATTAATTTTAAATTTTAAAAAAT‑‑‑T‑‑TCTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGt                                                                                                   <  2:7194740/125‑1 (MQ=255)
                                attttatATTTTTTTTTATTTTTTTTTT‑TTTGAATTTTTTTAAAAATTAATTTTTAATTTTAAAAAATT‑GC‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTaa                                                                                                     <  2:555669/125‑1 (MQ=255)
                                 tattatCTTTTTAGATATTTTTTGTAT‑ATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTTTTTAT‑TGTAAATATAAATTTAAGGTATttttttttaaaag                                                                                                    >  1:9610455/1‑121 (MQ=255)
                                 tattatCTTTTTAGATATTTTTTGTAT‑ATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTTTTAAA‑TTAAAAAATAAATTTAATTTATtttttttaataat                                                                                                    >  1:5768781/1‑121 (MQ=255)
                                 tattatCTTTTTAGATATTTTTTGTAT‑ATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTTT‑TAA‑TGGAAAAATAAATTTTAGTTATTTTTTTTTATAAGt                                                                                                   >  1:6978261/1‑128 (MQ=255)
                                 tattatCTTTTTAGATATTTTTTGTAT‑ATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑‑‑TTTTTTTTTTTTTTTTTATAA‑TGTAAATATAAATTTTAGGTTTTTTTTTTTATAATTa                                                                                                  >  1:4310742/1‑128 (MQ=255)
                                    tttatttttAG‑TATTTTTTTTTTAATTAAAATTTTTAAAAAATTAATTTTAAATTTTAAAAAAAA‑TC‑‑‑TTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATc                                                                                                <  2:6766748/124‑1 (MQ=255)
                                             ttttttttttttttt‑ttTCAAATTTTTAAAAAATTAATTTGAATTTTTTAAAAATATAT‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTaaaaaa                                                                                         <  1:5533126/123‑1 (MQ=255)
                                             atttatTTTTTTTAT‑TTTAAAATTTTTAAAAAATTTATTTTAACTTTTAAAAAATA‑GG‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTaaaaaaa                                                                                        <  2:9374754/125‑1 (MQ=255)
                                                 atTTTTTGTAT‑ATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTTTATAT‑TGTAAATATAAATTTTAGTTATTTTTTTTTAAAATTATAAAAAAAAATaaa                                                                                    >  1:3728662/1‑126 (MQ=255)
                                                  ttttttttAT‑ATTAAAATTTTTTAAAAATTAATTTTAAATTTTAAAAAATA‑TT‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGaa                                                                                   <  2:9518363/128‑1 (MQ=255)
                                                   tttttGTAT‑ATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GCT‑TTTTTTTTTTTTTTTTTTTAAAT‑TTTAAATAAAAATTTAATTTATTTTTTTTTAAAATTAATTAAAAAATTATaa                                                                                   >  2:3327134/1‑128 (MQ=255)
                                                      ttGTAT‑ATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGTAAAAATAAATTTTATTTATTTTTTTTTCTAATTATATAAAAAAATATaaataa                                                                               >  1:1541904/1‑125 (MQ=255)
                                                       tGTAT‑ATTCAAATTTTTAAAAAATTAATTTTTAATTTTAAAAAATA‑TC‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaa                                                                              <  2:8167608/128‑1 (MQ=255)
                                                        ttttttttaaatttttTAAAAAATTATTTTTAATTTAT‑AAAAATT‑TT‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaa                                                                             <  1:6535707/116‑1 (MQ=255)
                                                        tttttattctaaTTTTTAAAAAATTAATTTTTAATTTTAAAAAATA‑TA‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaa                                                                              <  1:8875800/118‑1 (MQ=255)
                                                         tat‑aTGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTTTTTAA‑TGGAAATATAATTTTTATGTTTTTTTTTTTATATTTTTATAAAAAAAtaaaaataaaaa                                                                            >  2:7882745/1‑128 (MQ=255)
                                                           tattcaaaaTTTTAAAA‑AATTAATTTGAACTTTTAAAAAATA‑TC‑‑‑CTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAat                                                                         <  1:9312770/122‑1 (MQ=255)
                                                           t‑atGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTTTATAT‑TGTAAATATAAATTTTTTTTTTTTTTTTTTAAAATTATATAAAAAAATAaaaaaaaaaaaa                                                                          >  2:5913790/1‑128 (MQ=255)
                                                            tattaaaaTTTTTTAAAAATTAATTTTTAATTTTAAAAATTT‑TT‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaaaaa                                                                          <  2:3671338/123‑1 (MQ=255)
                                                             atGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GCT‑TTTTTTTTTTTTTTTTTTTATAA‑TGTAAATATAAATTTTAGGTTTTTTGTTGAATATTTATATAAAAAAATATAATGTaaaaaa                                                                          >  2:8953184/1‑128 (MQ=255)
                                                              tGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GCTTTTTTTTTTTTTTTTTTTTTTTAA‑TTTAAATTTAAATTTTTGTTATTTTTTTTTATAATTTTAAAAAAAAATATAAATTaaaaat                                                                          >  1:3535084/1‑127 (MQ=255)
                                                              tGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTTTTTTGTTGTCTAATTTTATAAAAAAATAGAAAGGAAAAAata                                                                        >  2:8489551/1‑128 (MQ=255)
                                                               gCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTTTTTAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTATATTTATGTTAAAAATTATATATTAAAAAata‑t                                                                      >  2:5224996/1‑128 (MQ=255)
                                                               gCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑‑‑TTTTTTTTTTTTTTTTTAAAA‑TGGAAATATAAATTTTATGTATTTTGTTTTATAAGTATATAAAAAAATATAATGTAAAAAATA‑ttt                                                                    >  2:254103/1‑127 (MQ=255)
                                                                 taaTTTTTAAAAATTTAATTTTTATTTTTAAAAAATATTT‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATA‑tt                                                                     <  1:2995523/127‑1 (MQ=255)
                                                                 aaaTTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTTTATAA‑TTTAAATATAAATTTTAGGTTTTTTTTTGTATAAGTATATAAAAAAATAGAAAGTAAAAAATA‑TTg                                                                    >  2:2711210/1‑128 (MQ=255)
                                                                 aaaTTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTTTTATAT‑TGTAATTTTAATTTTTTGTTTTTTTTTTTTGAAATTATATAAAAAAATAAAAATAAAAAAATA‑tttt                                                                   >  2:10427389/1‑126 (MQ=255)
                                                                   aTTTTTAAAAAATTAATTTTAAATTTTAAAAAATA‑‑‑‑‑TCTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATA‑TTGTTaa                                                                <  2:982060/128‑1 (MQ=255)
                                                                    tttttaataatttaatttttaatttTTAAAAATT‑TT‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATA‑TTGTTa                                                                 <  2:7416384/117‑1 (MQ=255)
                                                                    ttttTAAAAAATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGTAAATATAAATTTTAGTTTTTTTTTTGTATATTTTTGATAAAAAATTTAAATTAAAAAATA‑TTTTTa                                                                 >  2:5384778/1‑128 (MQ=255)
                                                                       tttaaaaatttattTTAAATTATAAAAAA‑A‑AA‑‑TATTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTATAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATA‑TTGTTAA‑AAg                                                            <  2:2387332/122‑1 (MQ=255)
                                                                       ttaaaaaaTTAATTTGAACTTGTAAAAAATA‑GCTTTTTTTTTTTTTTTTTTTTTTTAA‑TGTAAATTTAAATTTATGTTTTTTTTTTGTATATTTTATTAAAAAATTATAATGTAAAAAATT‑TTTTTaa                                                                >  2:4381330/3‑128 (MQ=255)
                                                                        taaaaaaTTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTTTATAA‑TTAAAATTAAAATTTTTGGTTTTTTTTTTTATAATTATATAAAAAATTAAAAAGGAAAAAATA‑TTTTTaa‑aat                                                            >  1:8372679/2‑127 (MQ=255)
                                                                             aattaattTGAACTTGTAAAAAATA‑GCT‑TTTTTTTTTTTTTTTTTTTTTAA‑TTTTAATAAAAATTTTTATTTTTTTTTTTTTTAATTTTTTAAAAAATTATAAATTAAAATATT‑ATTTTAA‑AATTatt                                                        >  2:4126027/1‑126 (MQ=255)
                                                                              attaattTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTTTATAA‑TTTAAATAAAAATTTTAGTTATTTTTTTGTAAAATTATATAAAAAAAAAAAAAAAAAAAAATA‑TTTTAAA‑AATTaaaaa                                                      >  1:8701836/1‑125 (MQ=255)
                                                                               ttaattTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTTTTAAA‑TGGAAATTTAAATTTTATTTATTTTTTTGTAAAATTAAGAAAAAAAAAAAAAAAAAAAAAATA‑TTGTTAA‑aataaat‑aaa                                                    >  1:2857279/1‑126 (MQ=255)
                                                                               ttaattTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTTTATAG‑TGGAAATTTAAATTTTAGGTATTTTGTTGTGTTAGTATCTAAAAAATTATAAAGTAAAAATTT‑TTTTTAA‑AGTTAAT‑aat                                                    >  2:4859198/1‑126 (MQ=255)
                                                                               ttaattTGAACTTGTAAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTTTTATAA‑TGTAAATATAAATTTTAGTTTTTTTTTTTTAAAATTAAATAAAAAAATAAAAATAAAAAAATA‑TTTTTAA‑AATTaaaaaaa                                                    >  1:3174785/1‑123 (MQ=255)
                                                                                taattTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTTTTTAA‑TGGTAATATAAATTTTTTTTATTTTGTTTTGTAATTTTATTAAAAAATTAAAAGAAAAACATA‑TTTTTAA‑AATTaaaaaaa                                                    >  1:1137168/1‑123 (MQ=255)
                                                                                taattTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTAT‑TAA‑TGAAAAATAAAATTTTAGATATTTTTTTTAATAAGAATAAAAAAAAAAAAAAAAAAAAAAATA‑ATTTAaa‑aaaaaaaaaaaa                                                   >  1:5383423/1‑118 (MQ=255)
                                                                                      gAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGAAAAAATAAATTTTAGTTTTTTTTTTTTTTAATTATATTAAAAAATTAAAAGTAAAAAATT‑TTTTTAA‑AATTAAT‑aaaaatttta                                             >  2:1710912/1‑119 (MQ=255)
                                                                                       aaCTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGGAAAAATAAATTTTATGTATTTTTTTTTCTAATTATAAAAAAAAATAGAAATGAAAAAATA‑TTGTTAA‑AATTAAA‑AAAAAAattat                                            >  1:9912150/1‑128 (MQ=255)
                                                                                        aCTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTTTTAAA‑ATGAAATAAAAATTTTATTTTTTTTTTTTTATAATTATAAAAAAAAAAAAAAAAAAAAAAAAA‑TTTTAAA‑AATTAAA‑AAAAAAatttta                                           >  1:1773733/1‑125 (MQ=255)
                                                                                            ttAAAAAATT‑TT‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATA‑TTGTTAA‑AAGTAAT‑ACTAAAATTATTTAAt                                       <  1:10425304/127‑1 (MQ=255)
                                                                                            gTAAAAAATT‑TA‑‑TTTTTTTTTTTTTTTTTTTATTA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATA‑TTGTTAA‑AAGTAAT‑ACTAAAATTATTTAAt                                       <  1:675214/128‑1 (MQ=255)
                                                                                              aaaaaaTA‑GC‑‑‑TTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATA‑TTTTTAA‑AAGTAAT‑TCTAAAATTATTAAATGta                                    >  2:1128023/1‑127 (MQ=255)
                                                                                                aaaaTA‑GC‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGTAAATAAAAATTTTTGGTTTTTTTTTTTATAATTATATAAAAAAATA‑AAATGAAAAAATA‑TTTTTAATAATTATT‑ATAAAAtttatttattttat                                   >  2:2226943/1‑122 (MQ=255)
                                                                                                 aaaTA‑GCT‑TTTTTTTTTTTTTTTTTTTTTAA‑TGGAAATATAAATTTTAGTTATTTTTTTGTATAATTTTATAAAAAAAAATAAAGTAAAAATTT‑TTTTTAA‑ATTTTTT‑ATTAAAATTTTTTAATGtta                                   >  2:6316835/1‑128 (MQ=255)
                                                                                                 aaaTA‑GC‑‑TTTTTTTTTTTTTTTTTTTATAA‑TTTAAAAAAAAATTTAATTATTTTTGTTTAATAATAAAAAAAAAAAATATAAAATAAAAAAAA‑TTTTTAA‑AAGTAAT‑AAAAAAATTATTTATTTttaa                                  >  1:4683269/1‑128 (MQ=255)
                                                                                                  tataaattttttttttttttttttttttATAA‑TGGAATTATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATA‑TTGTTAA‑AAGTAAT‑ACTAAAATTATTTAATGtt                                    <  1:4854853/119‑1 (MQ=255)
                                                                                                   aTA‑GC‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTTGGTTTTTTGTTGTGTAAGTATATAAAAAAATAGAAAGGAAAAAATA‑TTGTTAA‑TATTAAT‑AATAAAATTTTttaattttaatt                                >  2:4711979/1‑128 (MQ=255)
                                                                                                    tA‑GC‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGTAAATATAAATTTTAGTTTTTTTTTTTTAAATTTTTAAAAAAAAATAAAAATAAAAAAAAA‑TTTTTAA‑AATTAAT‑AATAAAATTATTTATTTttattaa                               >  2:8014573/1‑124 (MQ=255)
                                                                                                      aatattttttttttttttttttttATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATA‑TTGTTAA‑AAGTAAT‑ACTAAAATTATTTAATGttaatt                                <  2:8804718/123‑1 (MQ=255)
                                                                                                       tttttttttttttttttttttttATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATA‑TTGTTAA‑AAGTAAT‑ACTAAAATTATTTAATGttaatta                               <  1:7220294/124‑1 (MQ=255)
                                                                                                       ttgttttttttttttttttttttATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATA‑TTGTTAA‑AAGTAAT‑ACTAAAATTATTTAATGttaatta                               <  1:8255096/124‑1 (MQ=255)
                                                                                                         agcttttttttttttttttttATAA‑TGGAAATATAAATTTTAGGTATTTTTTTGTCTAAGTATATAAAAAAATATAAAGGAAAAAATA‑TTTTTAA‑AATTAAT‑ACTAAAATTATTTAATTTTAATTaaa                             >  2:4548024/4‑128 (MQ=255)
                                                                                                          ttttttttttttttttttttATAA‑TTGAAATAAAAATTTTAGGTTTTTTGTTGTGATAGTTTATAAAAAAATAAAAAGAAAAAAATT‑TTGTTAA‑AAGTAAT‑AATTAATTTATTTAATGTTAATTaaaa                            >  2:6541487/2‑128 (MQ=255)
                                                                                                           tttttttttttttttttttATAA‑TGGAAATATAAATTTTAGTTATTTTGTTTTATAATTATATAAAAAAATAAAAAGTAAAAATAA‑TTGTTAA‑AAATAAA‑AATAAATATATATAATGTAAATTaaaaa                           >  1:3964183/1‑127 (MQ=255)
                                                                                                           gatttttttttttttttttATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATA‑TTGTTAA‑AAGTAAT‑ACTAAAATTATTTAATGTTAATTAAAAc                           <  1:5936406/126‑1 (MQ=255)
                                                                                                           cttttttttttttttttttATAA‑TGGAAAAATAATTTTTAGTTATTTTTTTTTCTAAGTATCTAAAAAAATAGAATTTAAAAAATA‑TTGTTAA‑AATTAAT‑ACTAAAATTTTTTAATGTTAATTataaa                           >  2:9113503/2‑127 (MQ=255)
                                                                                                             tttttttttttttttttATAA‑TGTAAATATAAATTTTAGGTATTTTTTTGTATAAGTATATAAAAAAATA‑AAAAGAAAAAATATTTGTTAA‑AAGTAAT‑AATAAAATTATTTAATTTAAATTAATACtt                         >  1:4513396/1‑128 (MQ=255)
                                                                                                              ttttttttttttttttATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTATAATTATATAAAAAAATAAAATGGAAAAAATA‑TTTTTAA‑AAGTAAT‑ACTAAAATTATTTAATGTTAATAaaaaataa                        >  2:8613099/1‑124 (MQ=255)
                                                                                                               tttttttttttttttATAA‑TGTAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATA‑TTGTTAA‑AAGTAAT‑ACTAAAATTATTTAATGTTAATTAAAACTtaa                       <  2:10103845/128‑1 (MQ=255)
                                                                                                               tttttttttttttttATAA‑TGGAAATTAAAATTTTTGGTATTTTGTTTTCAAATTATCTAAAAAAAAAGAAAGTAAAAAATT‑TTTTTAA‑AATAAAT‑AAAAAAATTATTTATTTTTAATTAAACATtaa                       >  1:5197853/1‑128 (MQ=255)
                                                                                                                ttttttttttttttttTA‑TTGAAATATAAATTTTATTTATTTTTTTGTATAATTATTTAAAAAAATAGAAATGAAAAAATA‑TTGTTAA‑AATTAAT‑TCTAAAATTATTTAATGTTAATTAAAACTtaaa                      <  2:7633590/128‑1 (MQ=255)
                                                                                                                ttttttttttttttATAA‑TGTAAATATAAATTTTATGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATA‑TTGTTAA‑AAGTAAT‑ACTAAAATTATTTAATGTTAATTAAAACTtaaa                      <  2:2057284/128‑1 (MQ=255)
                                                                                                                 tttttttttttttATAA‑TGGAAATTAAAATTTTAGGTATTTTGTTGTATAATTAAAAAAAAAAAAAAAAAGTAAAAAAAA‑TTTTTAA‑AAATAAT‑AAAAAAATTTTTTTATTTTaattaaaaattaaaa                     >  1:2167927/1‑127 (MQ=255)
                                                                                                                    ttttttttttATAA‑TGCAAATATAAATTTTAGGTATTTTTTTTTCTAAGTATATAAAAAAATACAAAGTAAAAAATT‑TTGTTAA‑AA‑TAATAAATAAAATTATTTAATGTAAATTAAAACTT‑AATaaaa                 >  2:501581/1‑128 (MQ=255)
                                                                                                                     tttttttttATTA‑TGGAAATATTAATTTTAGGTATTTTGTTGTATAAGTATATAAAAAAATAGAAAGGAAAAAATA‑TTGTTAA‑AAGTAAT‑ACTAAAATTATTTAATGTTAATTAAAACTTAAATaaaa                 <  1:7735456/128‑1 (MQ=255)
                                                                                                                             tataA‑TGTAAATATATATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATA‑TTGTTAA‑AAGTAAT‑ACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAAt         <  1:3337787/128‑1 (MQ=255)
                                                                                                                             tataA‑TGTAAATATAAATTTTATGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAATGAATAAATA‑TTGTTAA‑AAGTAAT‑ACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAAt         <  2:1336434/128‑1 (MQ=255)
                                                                                                                              ataA‑TGGAATTATAAATTTTAGGTATTTTGTTGTATAAGTATCTAAAAAAATAGAAAGGAAAAAATA‑TTGTTAA‑AAGTAAT‑ACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAAtt        <  1:231974/128‑1 (MQ=255)
                                                                                                                                   tGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATA‑TTGTTAA‑AAGTAAT‑ACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATtaata    <  1:2678785/128‑1 (MQ=255)
                                                                                                                                    ggAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATA‑TTGTTAA‑AAGTAAT‑ACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATtaataa   <  1:8542411/128‑1 (MQ=255)
                                                                                                                                     gAAATATAAATTTTATGTATTTTGTTGTATAAGTATATAAAAAAATAGAAATGAAAAAATA‑TTGTTAA‑AAGTAAT‑ACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATaaa  <  2:3491564/128‑1 (MQ=255)
                                                                                                                                     gAAATATAAATTTTATGTATTTTGTTGTATAAGTATATAAAAAAATAGAAAGGAAAAAATA‑TTGTTAA‑AAGTAAT‑ACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATaaa  <  2:5779959/128‑1 (MQ=255)
                                                                                                                                     gAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATA‑TTGTTAA‑AAGTAAT‑ACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATaaa  <  1:2471429/128‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                  
TCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTAT‑ATGCAAATTTTAAAAGAATTAATTTGAACTTGTAAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTTTATAA‑TGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATA‑TTGTTAA‑AAGTAAT‑ACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAA  >  CP016816/165147‑165402

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑