Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816165,3030CA37.6% 6293.4 / inf 3965intergenic (+267/‑275)JCVSYN2_00665/JCVSYN2_00670tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser
Reads supporting (aligned to +/- strand):  ref base C (757/1611);  new base A (1132/293);  total (2050/1915)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 4013 total aligned reads displayed.

CTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGA  >  CP016816/165173‑165430
                                                                                                                                       |                                                                                                                                
      ctaTTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTT‑‑TAATGTAAATATAAATTTTATGTATTTTTTTTTATAAGt                                                                                                                             >  2:9836932/1‑128 (MQ=255)
      attatatTTTTTTATATTTTTTTTTTTATTAAAAATTTTAAAAAAAATATTTTTAAATTTTAAAAAAAATT‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTaa                                                                                                                               <  1:1265569/124‑1 (MQ=255)
      atattatTTTTTTATTTTTTTTTTTTTTATTTAAATTTTTAAAAAATTAATTTTAAATTTTTAAAAATTTTT‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATTTAAATTTTAGGTATTTTGTTGTCTa                                                                                                                                <  1:7650412/127‑1 (MQ=255)
       tattttgattttATATATTTTTTGTATTTGCAAATTTTTAAAAAATTAATTTTAACTTTTAAAAAAAACC‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAg                                                                                                                              <  2:2365167/120‑1 (MQ=255)
       tattatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTTAATGGAAAAATAAATTTTAGTTATTTTTTTTTATAAGt                                                                                                                             >  1:6978261/1‑128 (MQ=255)
       tattatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGTAATTTTAAATTTTATTTATTTTTTTTTATaata                                                                                                                             >  2:7201014/1‑126 (MQ=255)
        attatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTTATAATTAAAATATAAATTTTATTTATTTTTTTTTATAATTAt                                                                                                                           >  2:6072939/1‑128 (MQ=255)
            tCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTATATTTGAATTATAATTTTTTGGTTTTTTTTTGTGTAATTAtat                                                                                                                         >  1:944678/1‑126 (MQ=255)
              ttttttttatttttttttATATTAAAATTTTTAAAAAATAAATTTTAAATTTAAAAAAATAG‑‑ATTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTaaa                                                                                                                      <  2:8586937/118‑1 (MQ=255)
                tttAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTATAATTTAAAAAAAAATTTTAGTTTTTTTTTTGTTTATTTATATaaaa                                                                                                                     >  2:9523405/1‑128 (MQ=255)
                    tttatTTTTTGTATTTTAAAATTTTTAAAAAATTAATTTTAAATTTTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAg                                                                                                              <  2:8944344/126‑1 (MQ=255)
                     tatttttttttttATTCAAATTTTTATAAAATTTTTTTTAAATTTTAAAAAAATTCCTTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTaaaaaaa                                                                                                                  <  1:7342141/125‑1 (MQ=255)
                            tttttttttcAAATTTTTAAAAAATTAATTTTTAATTTTAAAAAATATC‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTTTAAGTATCTAAAAAAATAGAAAGGa                                                                                                        <  1:6045033/119‑1 (MQ=255)
                            ttttttatGAAAATTTTTAAAAAATTATTTTTAACTTTTAAAAAATATC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaa                                                                                                       <  1:1072304/123‑1 (MQ=255)
                            ttGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTATAATGTAAATAATAATTTTTGTTATTTTTTTTTCTAATTATAAAAAAAAATTAAAAgaa                                                                                                        >  2:5382666/1‑126 (MQ=255)
                             ttttattttaatttttTAAAAATTTATTTTTAAATTTTAAAAATATT‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaa                                                                                                      <  2:912876/116‑1 (MQ=255)
                             tGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTAAAATGTAAATATAAATTTTAGGAATTTTTTTGAAAAAGAATCAAAAAAAATATAAATGaaa                                                                                                      >  1:4803263/1‑128 (MQ=255)
                                   tGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTTTAATGTAAATTAAATTTTTAGTTTTTTTTTTTTATAATTATATAAAAAAATATAAATTAAAAAata                                                                                                 >  2:3628331/1‑128 (MQ=255)
                                    gCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTTTAATGGAAATATAAATTTTAGGTATTTTGTTGTATATTTATGTTAAAAATTATATATTAAAAAatat                                                                                                >  2:5224996/1‑128 (MQ=255)
                                    gCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTATAATGAAAATAAAAATTTTATTTTTTTTTTTGTAAAATTTAAAAAAAAAATATAAAGATAAAAattt                                                                                                >  1:4637568/1‑126 (MQ=255)
                                     cAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATAAAAATTTTATTTTTTTTTTTTTGTAATTTTATAAAAAAATATAAAGAAATAAATAtt                                                                                               >  2:588964/1‑128 (MQ=255)
                                      aaaTTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTTTAATTGTAATTATAAATTATATTTATTTTTTTTTAAAATAATTAAAAAAAATTAAAAATAAAAAAAAtt                                                                                               >  1:1716300/1‑128 (MQ=255)
                                      aaaTTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTATAATTTAAATAAAAATTTTATTTATTTTGTTTTATTATTTTATAAAAAAATAAAAAGTAAAAAAttttt                                                                                              >  2:9668892/1‑127 (MQ=255)
                                         tttttaataatttaatttttaatttTTAAAAATTTT‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTa                                                                                           <  2:7416384/117‑1 (MQ=255)
                                         ttttTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTATAATGAAAATATAAATTTTATTTATTTTTTTTTAAATTTTTATAAAAAAATATAAATTAAAAAATATTTTTa                                                                                           >  1:516616/1‑128 (MQ=255)
                                              tataattttattTTAATTTTTAAAAAATTTT‑‑TTTTTTTTTTTTTTTTTTTATAATTGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGt                                                                                      <  2:1398577/119‑1 (MQ=255)
                                              taaaaattaattTTTAATTTTTAAAAAATTT‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGt                                                                                      <  1:3597627/124‑1 (MQ=255)
                                              aaaaaaTTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTAAAATGTAATATTAAATTTTAGGTATTTTTTTTTAAAATTAAGTAAAAAAATATAATGTAAAAAAATTTTTTaaaata                                                                                      >  2:3249642/1‑126 (MQ=255)
                                               aaaaattaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGTAATTTTTTTGTAAAATTATATAAAAAAATAAAAAGTAAAAAATATTGTTAAAAGTa                                                                                     >  2:9358866/4‑128 (MQ=255)
                                                  aatttattTTAAATTGTAAAAAATAT‑‑GTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATAc                                                                                 <  1:8845192/128‑1 (MQ=255)
                                                  aattaattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTTTTAATGGAAATATAAATTTTAGGTTTTTTTTTGTATAATTATATAAAAAAATAGAAAGGAAAAAATTTTTTTAAAATTAAt                                                                                   >  2:6973520/1‑128 (MQ=255)
                                                  aattaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTAAAATTAAAAAATAAATTTTATTTATTTTTTTGTAAAATTATAAAAAAAAATAAAAATTAAAAAATTTTTTTAAATTTAATa                                                                                  >  1:9881051/1‑128 (MQ=255)
                                                  aattaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTTTATGGAAATATTATTTTTTGGTATTTTGTTGTATTTTTTTAAAAATAATATGTAAGTAAAAAATTTTGTTaaatctaaaac                                                                                 >  2:4686683/1‑120 (MQ=255)
                                                  aattaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATTGTAAATTAAATTTTTTGTATTTTTTTGTATAATTATAAAAAAAAATAAAAATTAAAAAATATTTTTATATataataa                                                                                 >  1:6558981/1‑127 (MQ=255)
                                                   attaattTTTAATTGTAAAAAATATT‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATAc                                                                                 <  1:8685041/128‑1 (MQ=255)
                                                   attaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTAAAATGTAAAAAAAAATTTTAGTTATTTTTTTGTATAATTAAAAAAAAAAAAAAAAAGTAAAAAATTTTTTTaaaataaaaaa                                                                                 >  1:4243623/1‑121 (MQ=255)
                                                   attaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATTGAAATATAAATTTTTGTTATTTTTTTGTATAATTATAAAAAAAAAAAAAAAGTAAAAAAAATTTTTTAAATTAATaaa                                                                                >  1:820725/1‑126 (MQ=255)
                                                   attaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTATTTATTTTGTTGTATAATTTTATAAAAAAATAAAATGTAAAAAATATTTTTAAAATTtataat                                                                                >  2:10267343/1‑126 (MQ=255)
                                                    ttaattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGTTATTTTTTTTTATAATTTTATAAAAAAATATAAAGTAAAAAATTTTTTTAAATGTAATaa                                                                                 >  2:6303119/1‑127 (MQ=255)
                                                    ttaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTTAATTAAAAAAAAAATTTTAGTTTTTTTTTTTTAAAATTATAAAAAAAAATAAAAATAAAAAAATATTTTTAAAATTAataata                                                                               >  1:3192438/1‑128 (MQ=255)
                                                    ttaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTATTTATTTTTTTTTATAAGTATATAAAAAAATATAAAGGAAAAAATATTTTTAAAATTAATaaaa                                                                               >  2:1987939/1‑125 (MQ=255)
                                                    ttaattTGAACTTGTAAAAAATAGC‑‑‑‑‑‑TTTTTTTTTTTTTTTATATTGTAAATATAAATTTTTGGTTTTTTTTTTTCTAAGTATATAAAAAAATATAAAGTAAAAAATATTTTTAAAAGTATTAATtaaa                                                                            >  1:9746437/1‑128 (MQ=255)
                                                           tGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTATATTTTAAATATAATTTTTTTTTTTTTTTTTTTATATTTATATAAAAAAATATAATTTAAAAAATTTTTTTAAAATTatataaaaattt                                                                          >  2:4084171/1‑117 (MQ=255)
                                                            gAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGTTATTTTGTTGAATAAGTATAAAAAAAAATATAAAGAAAAAAAAATTTTTAAAATTAATACAAAAatt                                                                          >  1:2524863/1‑128 (MQ=255)
                                                             aaCTTTTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTAttt                                                                      <  1:9057784/128‑1 (MQ=255)
                                                              aCTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTTAAAATGTAAATAAAAATTTTAGTTTTTTTTTTTTATATGTAAATAAAAAAATATAAAAAAAAAAATTATGTTAAATTTAATAATAAAatttt                                                                        >  2:1805968/1‑126 (MQ=255)
                                                                     tttataattttttttttttttttttttttttATAATTGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAAt                                                                   <  2:5032067/116‑1 (MQ=255)
                                                                     aaaaaaTAGC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTTTTTTGTTTTATAATTATCTAAAAAAATTAAAAGTAAAAAATATTTTTAAAATTAAAAATAAAATTATTTAAtttt                                                                >  2:7924906/1‑128 (MQ=255)
                                                                       aaaaTAGCTTTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTTTTTTATAAGTTTATAAAAAAATATAAAGTAAATAATATTTTTAAAATTAATAAAAAAATTATTTAAtta                                                                 >  2:812133/1‑126 (MQ=255)
                                                                         aaTAGC‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGTTATTTTGTTTTATAATTATAAAAAAAAATATAAAGAAAAAAATATTTTTAAATTTAATAAAAAAATTATTATATTttaat                                                             >  2:3811484/1‑128 (MQ=255)
                                                                          aaatttttttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAATGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaa                                                              <  2:8434002/121‑1 (MQ=255)
                                                                           tAGC‑‑TTTTTTTTTTTTTTTTTTTTAAATGTAAATTAAATTTTTTGTTATTTTGTTTAAAATTTTAAAAAAAAAAATAAAAGAAAAAAATTTTTTTAAAATAATAAATAAATTATTTAATTtttaataa                                                          >  1:7875717/1‑128 (MQ=255)
                                                                           aaattttttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaat                                                             <  1:5001713/122‑1 (MQ=255)
                                                                             tttttttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatta                                                           <  1:2373242/124‑1 (MQ=255)
                                                                             attttttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatta                                                           <  1:268773/124‑1 (MQ=255)
                                                                              atttttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaattaa                                                          <  1:1021615/125‑1 (MQ=255)
                                                                                  ttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACt                                                      <  2:10096816/128‑1 (MQ=255)
                                                                                   tttttttttttttttttAAATTGGAATTTTAATTTTTTGTTTTTTTGTTTTAAAATTATCAAAAAAAAAAAAAAGGAAAAAATATTGTTAAAATTTATCATAAAAATATTTAATATTAATTaaaatat                                                     >  1:5861687/1‑125 (MQ=255)
                                                                                       tttttttttttttATAATTGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTtaaat                                                 <  2:4493243/128‑1 (MQ=255)
                                                                                        ttttttttttttATAATTGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTtaaata                                                <  1:3371663/128‑1 (MQ=255)
                                                                                        ttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTtaaata                                                <  1:550702/128‑1 (MQ=255)
                                                                                        ttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTtaaata                                                <  1:1479279/128‑1 (MQ=255)
                                                                                         tttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTtaaataa                                               <  2:5754573/128‑1 (MQ=255)
                                                                                              ttttttAAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAATTATCTAAAAAAAAATAAAGGAAAAAATATTTTTAAATGTAATAATAAAATTATTTAATTTTAATTAAAACTTAAATAAAACaaa                                         >  1:8063297/1‑126 (MQ=255)
                                                                                               tttttATAATTGAAATATAAATTTTAGGTATTTTGTTGTCTTAGTATATAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATa                                         <  2:7699856/128‑1 (MQ=255)
                                                                                                   tataATTGAAATATAAATTTTATGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAAt                                     <  2:3039535/128‑1 (MQ=255)
                                                                                                     taATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATta                                   <  2:10429646/128‑1 (MQ=255)
                                                                                                        attgAAATATAAATTTTATTTATTTTTTTGTATAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATtaat                                 <  2:6776669/125‑1 (MQ=255)
                                                                                                         ttgAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATtaata                                <  1:5710833/126‑1 (MQ=255)
                                                                                                           taaaTATAAATTTTATGTATTTTGTTGTCTAAGTATCTAATAAAATAGAAAGTAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATaaa                              <  2:4880528/127‑1 (MQ=255)
                                                                                                           taaaTATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATaaa                              <  2:825948/127‑1 (MQ=255)
                                                                                                           gAAATATAAATTTTATTTATTTTGTTGTCTAATTATACAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATaaa                              <  1:4440799/128‑1 (MQ=255)
                                                                                                           gAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATaaa                              <  1:3771048/128‑1 (MQ=255)
                                                                                                            aaaTATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATaaaa                             >  2:8743665/1‑128 (MQ=255)
                                                                                                              atatAAATTTTAGGTATTTTGTTGTCTAAGTATATAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAAt                           <  1:4042640/128‑1 (MQ=255)
                                                                                                                 taAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTATTTAAAACTTAAATAAAACATAAAATTAATAAAAATAGt                        >  2:1594489/1‑128 (MQ=255)
                                                                                                                   taTTTTATGTATTTTTTTGTATAATTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGttt                      <  1:1921656/127‑1 (MQ=255)
                                                                                                                    aTTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTtta                     <  2:2490869/128‑1 (MQ=255)
                                                                                                                     ttttAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTttat                    >  1:8521572/1‑128 (MQ=255)
                                                                                                                      tttATGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTttatt                   <  1:5344558/128‑1 (MQ=255)
                                                                                                                      tttAGGTATTTTGTTGTCTAAGTATCT‑‑AAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTaa                 >  2:1141329/1‑128 (MQ=255)
                                                                                                                        tAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTaa                 >  2:2685559/1‑128 (MQ=255)
                                                                                                                         aGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTttattaca                >  1:9588011/1‑126 (MQ=255)
                                                                                                                         aGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAAAAAAAATAGTTTATTaaa                >  1:2857493/1‑128 (MQ=255)
                                                                                                                           gTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAATGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACt              <  2:6558981/128‑1 (MQ=255)
                                                                                                                              ttttGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAt           <  1:10390212/128‑1 (MQ=255)
                                                                                                                               tttGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAtt          >  1:720188/1‑128 (MQ=255)
                                                                                                                                ttgttgTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAttt         <  1:9274476/128‑1 (MQ=255)
                                                                                                                                ttgttgTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAAAATAAAATTAATAAAAATAGTTTATTAAACTAAttt         >  1:10000058/1‑128 (MQ=255)
                                                                                                                                ttgttgTATAAGTATATAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAttt         <  2:2835609/128‑1 (MQ=255)
                                                                                                                                 tgttttATAAGTATATAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTc        <  2:3435128/128‑1 (MQ=255)
                                                                                                                                   ttgtCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGt      <  2:4346683/128‑1 (MQ=255)
                                                                                                                                   ttgtCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAAATAATTTctt      >  1:6808259/1‑126 (MQ=255)
                                                                                                                                   ttgtCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATCAATAAAAATAGTTTATTAAACTAATTTCGt      <  1:2075042/128‑1 (MQ=255)
                                                                                                                                   ttgtATAAGTATATTAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGt      <  1:6314463/128‑1 (MQ=255)
                                                                                                                                    tgtCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGtt     <  1:2236635/128‑1 (MQ=255)
                                                                                                                                     gtCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGttt    <  1:8334387/128‑1 (MQ=255)
                                                                                                                                      tCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTg   <  2:2216276/128‑1 (MQ=255)
                                                                                                                                       cTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTTATACTAAAATTATTTAATGTTAATTAAAACTTTAATAAAACATAAAATTAATAAAAATAGTTTATTTAACTAAATTCGttata  >  2:5561207/1‑125 (MQ=255)
                                                                                                                                       cTAAGTATATAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGa  <  1:3017843/128‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                
CTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGA  >  CP016816/165173‑165430

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: