Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4770CA43.7% 999.4 / inf 1209intergenic (+255/‑420)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base C (378/295);  new base A (127/395);  total (507/702)
Fisher's exact test for biased strand distribution p-value = 4.22e-29
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1369 total aligned reads displayed.

AAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATA  >  CP016816/202350‑202606
                                                                                                                                |                                                                                                                                   
aagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAATCTTAATAATTCTTAAAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAc                                                                                                                                     <  2:1631482/128‑1 (MQ=255)
aagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAc                                                                                                                                     >  1:3683516/1‑128 (MQ=255)
   ttgtGAAGTTAGTGTAAATATTTGAGGTAAGGTTAATTAAAATACCATAAAATTAATAATTCTTATAATGTAGATCCTAGTGATATATTTTTTTATTTGTTTATCTTAACAAAT‑AAAAAAAAAACAAt                                                                                                                                  <  1:5342342/126‑1 (MQ=255)
   tattGAATTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATAACATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAt                                                                                                                                  <  1:7614839/125‑1 (MQ=255)
   tagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAt                                                                                                                                  <  1:2957338/128‑1 (MQ=255)
   tagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAt                                                                                                                                  <  2:8918725/128‑1 (MQ=255)
    agtGAAGTTAGTGTAAATACTAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATc                                                                                                                                 <  1:6213887/128‑1 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAATGTTAATTAAAATAAAATAAACTTAATAATTCTTATAATATATATAATCTTGATCTATATTTTTATAATATAATCTTCACAAAT‑AAAAAAAAAACaaaa                                                                                                                                 >  2:7544024/1‑126 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTATATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAAAAAT‑AAAAAAAAAACAAta                                                                                                                                 >  1:3102962/1‑127 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTATATATATTTATAATAAAAAAT‑Aaaaaaaaaaaaaaa                                                                                                                                 >  2:3965081/1‑126 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACaaac                                                                                                                                 >  1:10208516/1‑126 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATATTTATATTTATTTATCTTCACAAAA‑AAAAAAAAAACaaaa                                                                                                                                 >  2:1179916/1‑126 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCTTGATCTATTATTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAAAAATc                                                                                                                                 >  2:2754656/1‑128 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTAATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATATTCAAAAAT‑AAAAAAAAAAAAAta                                                                                                                                 >  1:10007915/1‑127 (MQ=255)
     ttGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATcc                                                                                                                                <  2:8379378/127‑1 (MQ=255)
     gtGAAGTTAGTGTATATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATcc                                                                                                                                <  2:6889204/128‑1 (MQ=255)
     gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATcc                                                                                                                                <  1:2386986/128‑1 (MQ=255)
     gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTAACAAAT‑AAAAAAAAAAAAATcc                                                                                                                                >  1:8476114/1‑128 (MQ=255)
     gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTATTATAATGTAGATCCTCTTGATCTATATTTTTATATTTTTATATTAAAAAAT‑AAAAAAAAAAAAAtac                                                                                                                                >  2:7076346/1‑126 (MQ=255)
      tGAAGTTAGTTTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATACTAATAAATTATATCCACATTATCTAATATATTATATTTTTATCTACACAAAA‑AAAAAAAAAACaaacac                                                                                                                               >  1:5517176/1‑124 (MQ=255)
       gAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTATTATAATATATATACTCATAATCTATTTTATTATTTTTTTATATTAACAAAT‑Aaaaaaaaaaaaaaaaaa                                                                                                                              >  1:5706766/1‑123 (MQ=255)
        aaGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCACCt                                                                                                                             >  1:1168053/1‑128 (MQ=255)
         aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAAAAAT‑AAAAAAAAAACAATCCCCtt                                                                                                                            <  1:5107453/128‑1 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAATCACCtt                                                                                                                            >  1:7983584/1‑128 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAAAGAAGATCCTCGTTATCTAATATTTTATATGATTATCTACACAAAT‑Aaaaaaaaaaaaaacaaaata                                                                                                                           >  2:9844143/1‑120 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAAAAAATCTTATAAAATATATACTCTTTATCTAAAATAATATATTATTATAATAACAAAT‑Aaaaaaaaaaaaaaaaaataa                                                                                                                           >  1:4678815/1‑120 (MQ=255)
           ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTATATCCTCGTAATATATATATATATTTTATAATAATAACAAAT‑Aaaaaaaaaaaaaaaaaaaaaa                                                                                                                          >  1:4123484/1‑119 (MQ=255)
           ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑Aaaaaaaaaaaaaaacaaataa                                                                                                                          >  2:1331289/1‑119 (MQ=255)
           ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATATTTTTATCTTCACAAAT‑AAAAAAAAAACaaaaaaattaa                                                                                                                          >  2:2259840/1‑119 (MQ=255)
             agattAAATAATAGTTTTAAGTTTAAATAAAATACCATAAACTTAAAAATTATTAAAATCTATAACCACGTTATCAATTTTTTTATTTTTTTTTCTTCACAAAT‑AAAAAAAAAACAATCCCCttaaaa                                                                                                                        <  1:7276744/124‑5 (MQ=255)
             aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTAGATAATCTTGATCTATATTTATATTTTATTAAATAAAAAAAT‑AAAAAAAAAAAAAtaaaattaaaa                                                                                                                        >  2:4741820/1‑118 (MQ=255)
               tgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATATGTTTATCTTCACAAAT‑‑AAAAAAAAACAATCCCCtaaaaaatt                                                                                                                     >  1:9895790/1‑120 (MQ=255)
                    ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAATAAAAACAATCCCC‑‑Ttaaa‑‑aattaaaa                                                                                                             >  1:9604548/1‑128 (MQ=255)
                    ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCCtt‑‑‑aa‑‑aaataaaaa                                                                                                            >  1:3511010/1‑128 (MQ=255)
                      aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑Ttaaa‑‑aattaaaaaa                                                                                                           >  1:1318538/1‑128 (MQ=255)
                      aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCAC‑‑ataaaa‑‑aaataaaaaa                                                                                                           >  1:8753472/1‑128 (MQ=255)
                        taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTATATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCAAC‑‑TTAAA‑‑AAATaaaaaaaa                                                                                                         >  2:9573472/1‑128 (MQ=255)
                         agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTAATTTGATTATCTACACAAAT‑AAAAAAAAAAAAATCACCTAaaaaa‑‑aaaaaaaaaaa                                                                                                          >  1:1871415/1‑128 (MQ=255)
                             ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaa                                                                                                    >  1:8357638/1‑128 (MQ=255)
                             ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAA‑‑AATTaaaaaaaaaaaaa                                                                                                    >  1:8266470/1‑128 (MQ=255)
                              tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTAGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCAC‑‑‑TAAA‑‑AAATtaaaaaaaaaaaaaa                                                                                                  >  1:3231435/1‑128 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACaa                                                                                                                                   >  1:2794734/1‑99 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAAT‑‑CCAATTAAA‑‑AATTaaaaaaaaaaaaaaa                                                                                                  >  1:10458523/1‑128 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCATGATCTATTTTTTTATTTTTTTATATTAACAAAT‑AAAAAAAAAAAAAT‑‑‑AAAATAAA‑‑AAATtaaaaaaaaaaaaaaa                                                                                                 >  1:5918274/1‑128 (MQ=255)
                                aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATACCCTT‑‑‑AA‑‑AAATaaaaaaaaaaaaaaaaa                                                                                                >  1:9136112/1‑128 (MQ=255)
                                 ttttaaataaAATAAAATAAACTTAATAATTATTAAAATTTTTAACCATGTGTTATATTTTTTTTTTTTTTTATAATAAAAAAT‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaa                                                                                                <  2:3637408/126‑1 (MQ=255)
                                 ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATTCACAAAT‑AAAAAAAAAAAAAAACAAAT‑‑‑AA‑‑AAATaaaaaaaaaaaaaaaaaa                                                                                               >  2:790341/1‑128 (MQ=255)
                                 ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTAATCTTCACAAAT‑AAAAAAAAAAAAATCAC‑‑ATTAAA‑‑AATTaaaaaaaaaaaaaaaaa                                                                                                >  2:1076294/1‑128 (MQ=255)
                                  tttaattaaAATAAAATAAAATTAATAATTATAAAAATTTATATACTATTTTTCTATTTTTTTATTTTTTTATATTAACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaaa                                                                                               <  2:5146364/127‑1 (MQ=255)
                                      attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaaaaaaa                                                                                           >  2:8850548/1‑127 (MQ=255)
                                        taaaataaaataaaaTTAATAATTCTTATAATTTATTTACTAGTTTTCTATTTTTTTATTTTTTTATATTCACAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaaaactaaa                                                                                         <  2:8092723/128‑6 (MQ=255)
                                          aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                       >  1:9705781/1‑123 (MQ=255)
                                           aaaaaaaaaaaTTTAAAAATAATTATAATTAAAAACCACGTTATATATTTTTTTATTTTTTAATATAAAAAAAA‑AAAAAAAAAAAAAACCC‑‑‑ATAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTaaaaa                                                                                     <  2:10279749/120‑1 (MQ=255)
                                             tACCATTAATTTAAAAATTATTATATATTATCACATCGTTATAAATTTTTTTAATTTTTTAAAATCACAAAA‑TAAAAAAAAAAAATCCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                   <  2:9232193/128‑1 (MQ=255)
                                               acattaaaattataatTGTTATAATGTATTACCTCCTGATGTTATTTTTTAATTGTATTTCATAAAAAAT‑AAAAAAAAAACAAACCCC‑‑AAAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                  <  2:6639022/117‑1 (MQ=255)
                                                cATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACaaaaaaaaaaa                                                                                >  1:8998627/1‑127 (MQ=255)
                                                  taaaaataattaTTTTTAAAATTTATAAACACGTGATAAATTTTTTTATTTTTTTAACATCACAAAA‑AAAAAAAAAAAAAACCCC‑TTAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAaaacaaac                                                                                <  2:5725451/122‑1 (MQ=255)
                                                    aaattAATATATATTATAATTTATAAACTAGTTATTTATTTTTTTATTTTTTTATATTCAAAAAA‑AAAAAAAAAAAAATCCCC‑‑ATAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                             <  2:10014002/125‑1 (MQ=255)
                                                     aataaataatACTAATAATTTAGAAACTCGTGTACTATTTTTTTATTTTTTAAAATTAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑ATAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                            <  2:2041674/124‑1 (MQ=255)
                                                            tatTCTTAAAATTTACATACCCGTTAAATATTTATTTAATTTTTTATAATAAAAAAT‑AAAAAAAAAACAAAACCC‑TAAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                      <  2:2919782/127‑1 (MQ=255)
                                                            aaatattATAATGTATATCATCATTATATATTTTTTTATTTTTTTAAAATAAAAAAA‑AAAAAAAAAAAAAACCCC‑ATAAAA‑‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                      <  2:9148245/123‑1 (MQ=255)
                                                                          taaTCCTCTTTATATATTTTTTTATTTTTTTTAATTAACAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                       <  2:3236818/126‑1 (MQ=255)
                                                                             ttcttgttttttATTTTTTTTTTTTTTTTTATTAAAAAAA‑AAAAAAAAAAAAATACCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                    <  1:8077876/117‑1 (MQ=255)
                                                                              taattttatttatttttttattttttTATATTAAAAAAA‑AAAAAAAAAAAAAATACC‑CTTAAA‑‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                    <  2:3740706/118‑1 (MQ=255)
                                                                              acattttttCTATTTTTTTTTTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                   <  2:9738782/120‑1 (MQ=255)
                                                                               atctataaatATTTTTTTAATTTTTTATATTAAAAAAT‑AAAAAAAAAA‑AAAAAAATTTAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                   <  2:5881077/119‑1 (MQ=255)
                                                                                tatttataaaTTTTATTAATTTTTTATAATAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑ATAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcaca                                                 <  2:8558300/119‑1 (MQ=255)
                                                                                 atttatatATTTTTTTTTTTTTTTATATTAAAAAAT‑AAAAAAAAAAAAATACCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                    <  2:4927735/121‑1 (MQ=255)
                                                                                   ttttatatttttttattttttTATATTAAAAAAA‑AAAAAAAAAAAAAT‑‑ACAATAAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                              <  1:2130587/123‑1 (MQ=255)
                                                                                    ttttttttttttttttttttttTATTATCAAAA‑AAAAAAAAAAATATATCC‑TTTAAA‑‑ATTTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                              <  2:101548/122‑1 (MQ=255)
                                                                                    tttttttttttttATTTTTTTTTTTTCAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                             <  1:9262874/122‑1 (MQ=255)
                                                                                    tttttATTTTTTTATTTGTTTATATAAAAAAAA‑AAAAAAAAAAAAAT‑TCCTATAAAA‑‑ATTTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                              <  2:8153609/124‑1 (MQ=255)
                                                                                    ttattATTTTTTTTTTTTTTTA‑AATAAAAAAA‑AAAAAAAAAAAAAAACCCATAAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                              <  2:937129/124‑1 (MQ=255)
                                                                                     atatatttttttattttttTATAATAAAAAAA‑AAAAAAAAAAAAATACCCATAAAAA‑‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                              <  2:4453455/125‑1 (MQ=255)
                                                                                       attttttttttttttttttttATAAAAAAT‑AAAAAAAAAAAAATAACCATT‑‑‑A‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttattt                                         <  1:10120947/125‑1 (MQ=255)
                                                                                         ttttttttAATTTTTTATATTAAAAAAA‑AAAAAAAAAAAAAATACCCTT‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                        <  2:7319886/127‑1 (MQ=255)
                                                                                         aattttttatttttttatATAAAAAAAT‑AAAAAAAAAACAATACCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                        <  2:9004117/126‑1 (MQ=255)
                                                                                          tttttttatttttttaTAATAAAAAAT‑AAAAAAAAAAAAATACAC‑‑TTAAA‑‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                      <  2:2469382/128‑1 (MQ=255)
                                                                                           ttttttttttttttttttTAAAAAAA‑AAAAAAAAAAAAAAAACATTATAAA‑‑TTA‑AAATAAAAAAAAAAAAAAAATCTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                       <  2:6410660/128‑1 (MQ=255)
                                                                                           ttttttatttttttatATTAACAAAT‑AAAAAAAAAAAAAACACC‑‑TTAAA‑‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                     <  1:7875913/128‑1 (MQ=255)
                                                                                           ttttttATTTGTTTATATT‑AAAAAA‑AATAAAAAAAAAATACCCTTT‑‑‑A‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                    <  1:2629901/128‑1 (MQ=255)
                                                                                              ttttttttttAATATTAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AATAAAAAAAAATAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaaa                                   <  1:6729324/128‑1 (MQ=255)
                                                                                              tttATTTGTATATAATAAAAAAA‑AAAAAAAAAACAAACCAC‑‑ATAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaaa                                   <  2:5414438/128‑1 (MQ=255)
                                                                                              tttATTT‑TTTATATTAAAAAAA‑AAAAAAAAAAAAAAACCC‑ATAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaaa                                   <  1:8891973/128‑1 (MQ=255)
                                                                                                 aTTTTTTTATCTTTAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAACAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                <  2:8786314/128‑1 (MQ=255)
                                                                                                    tttttATATTAAAAAAT‑AAAAAAAAAAAAATACCC‑TTAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                              <  2:6227069/126‑1 (MQ=255)
                                                                                                    tttttATATTAAAAAAT‑AAAAAAAAAAAAAT‑‑AAAATTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGat                             <  2:3087472/126‑1 (MQ=255)
                                                                                                      tttattataaaaaaa‑aaaaaaaaaaaaATACAC‑TTAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                            <  1:8624571/117‑1 (MQ=255)
                                                                                                      tttATATTAAAAAAT‑AAAAAAAAAAAAATACAATT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                          <  2:7780754/128‑1 (MQ=255)
                                                                                                          aaataaaaaaa‑aaaaaaaaaaaaaaCCCC‑‑TTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGAc                       <  2:3458812/121‑1 (MQ=255)
                                                                                                           taataaaaaaataaaaaaaaaTAATCCCC‑‑TTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGAc                       <  2:4199170/116‑1 (MQ=255)
                                                                                                             taaaaaaT‑AAAAAAAAAAAAAT‑‑ACAATTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                    <  2:10408435/124‑1 (MQ=255)
                                                                                                               aaaaaa‑aaaaaaaaaaaaATACAC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataat                  <  2:8220478/126‑1 (MQ=255)
                                                                                                                 aaaT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatat                <  2:8667480/128‑1 (MQ=255)
                                                                                                                  aaT‑AAAAAAAAAA‑AAAACCATTAAAAA‑‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatat                <  2:184668/128‑1 (MQ=255)
                                                                                                                   aT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAA‑TAAAAAAAAAATATATTTATTAAAATTAACATTTAAAAAAAATTTTATATTTAAAATAATAAATTTAAATAatataaat            >  2:9456209/1‑128 (MQ=255)
                                                                                                                      aaaaaaaaaaaaAT‑ACCTTTAAAA‑‑ATTTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata             <  1:6935431/128‑1 (MQ=255)
                                                                                                                         aaaaaaaaaaTCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTa         <  2:5564164/128‑1 (MQ=255)
                                                                                                                          aaaaaaCAATCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAA‑TAAAAAAAAAATCTTTTTATTAAAATTCCCTTTTATACCCATTTTTTTTTTTAAAATAATTTTATTACAAAATATATATCTTat       >  1:9449930/1‑128 (MQ=255)
                                                                                                                                cAATCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAAATAAAAACAAACTCTATTTATTAAAATTCCCTATTATAAAACATTTTATTTTTAAAATAAGATATTTAAATAATATATAGATAatttata  >  2:7982053/1‑128 (MQ=255)
                                                                                                                                |                                                                                                                                   
AAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATA  >  CP016816/202350‑202606

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑