Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4810CA37.2% 969.0 / 178.8 995intergenic (+259/‑416)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base C (259/316);  new base A (75/266);  total (367/628)
Fisher's exact test for biased strand distribution p-value = 1.44e-12
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1127 total aligned reads displayed.

AGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCAC‑ATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATAT  >  CP016816/202354‑202607
                                                                                                                                 |                                                                                                                                 
agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATACTTATAATGTAAATCCTCTTGATCTATTTATTTATTTATTTAT‑CTACACAAAT‑AAAAAAAAAACAATc                                                                                                                                   >  2:220345/1‑128 (MQ=255)
aggataGTTAGTGTTAATAATAGTCTTAAGGGTTATTAAAAAACCATAAACATAAAAAATCTTAAAATCTACCTCCGCGTGAACGAATTTTTAATTTGTTTAT‑CTTCACAAAA‑TAAAAAAAAACAATc                                                                                                                                   <  2:7027229/123‑1 (MQ=255)
 gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑ATTCACAAAT‑AAAAAAAAAACAATcc                                                                                                                                  >  1:7958307/1‑128 (MQ=255)
 gtGAAGGTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAACAATcc                                                                                                                                  <  2:5935695/128‑1 (MQ=255)
  tgtaGTTAGTGTAAATAATTGAGTTAAGGTTAATTAAAATACCATTAAATTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAACAATccc                                                                                                                                 <  1:6775050/125‑1 (MQ=255)
  tGAATTTATTTTAAATAATATATTTAAGGTTAATTAAAATAACATAAACTTAATAATTCTTATAATTTAGATCCTCCTGATCTATTTTTTTATTTGTTTAT‑CTTAACAAATAAAAAAAAAAACAATcc                                                                                                                                  <  2:183685/128‑1 (MQ=255)
  tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAACAATccc                                                                                                                                 <  2:4489784/128‑1 (MQ=255)
    aaGTTATTTTAAATAATAGAGTTAAGTTTATTTAAAATACCATAAAATTAATAATTCTTATAATCTATATCCTCTTTATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAACAATCCCCt                                                                                                                               <  2:2854099/128‑1 (MQ=255)
    aaGTTAGTTTAAATAATAGAGTTAAGGTAAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATATATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAACAATCCCCt                                                                                                                               <  1:9738936/128‑1 (MQ=255)
    aaGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAACAATCCCCt                                                                                                                               <  2:5296268/128‑1 (MQ=255)
      gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAACAATCACCtta                                                                                                                             >  2:1146464/1‑127 (MQ=255)
       tttttgtAATTAATTAAGTTAAGTTTATTTAAATTACAATAAATTTTTTAATTCTTTAATTTTTGATCCTCGTGATATATTTTTTTATTTTTTTTT‑CTTAAAAAAT‑AAAAAAAAAACAATCCCCttaa                                                                                                                            <  1:947166/124‑3 (MQ=255)
       ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATATTTTTATTTGTTTAT‑CTTCACAAAT‑‑AAAAAAAAACAATCACCttaaa                                                                                                                           >  2:9214018/1‑125 (MQ=255)
       ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTATTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCAAAAAT‑AAAATAAAAACAATacccataa                                                                                                                            >  1:8391056/1‑124 (MQ=255)
        tAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCTTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAAAAATACACttaaa                                                                                                                           >  2:10464176/1‑125 (MQ=255)
          gtgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAACAATCCCCttaaaaa                                                                                                                         >  1:8712564/1‑123 (MQ=255)
             tAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAACAATacccataaaaatta                                                                                                                      >  1:8836449/1‑118 (MQ=255)
                ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTATTTTATATATTTAT‑CTTCACAAAT‑AAAAAAAAAAAAAACCCC‑‑‑taaa‑‑aaataaaaa                                                                                                              >  1:3023818/1‑128 (MQ=255)
                ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAATAAAAACAATCCCC‑‑Ttaaa‑‑aattaaaa                                                                                                               >  1:9604548/1‑128 (MQ=255)
                  aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAACAAACAC‑‑ataaaa‑‑aaataaaaaa                                                                                                             >  1:3548506/1‑128 (MQ=255)
                   ataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAACAATACCCTT‑‑‑AA‑‑AAATaaaaaaaa                                                                                                           >  2:8378221/1‑128 (MQ=255)
                    taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATTATTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAACAATAAC‑‑ATTAAA‑‑AATTaaaaaaaa                                                                                                           >  2:9824004/1‑128 (MQ=255)
                    taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaa                                                                                                           >  1:1019482/1‑128 (MQ=255)
                    taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaa                                                                                                           >  1:8568875/1‑128 (MQ=255)
                    taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAACAAT‑‑CCAATAAAA‑‑AAATaaaaaaaa                                                                                                           >  1:5072656/1‑128 (MQ=255)
                    taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AATTaaaaaaaa                                                                                                           >  1:8031679/1‑128 (MQ=255)
                     agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAACAAAACC‑‑ATTAAA‑‑AATTaaaaaaaaa                                                                                                          >  2:8906879/1‑128 (MQ=255)
                        gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAACAATAAACTT‑‑‑AA‑‑AAATaaaaaaaaaaaaa                                                                                                      >  2:7860209/1‑128 (MQ=255)
                        gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTATTTATATAT‑CTTCACAAAT‑AAAAAAAAAAAAA‑‑AACAATTAAA‑‑AATTaaaaaaaaaaaa                                                                                                       >  2:3807114/1‑128 (MQ=255)
                          tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaa                                                                                                     >  1:10014824/1‑128 (MQ=255)
                          tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaa                                                                                                     >  1:1177382/1‑128 (MQ=255)
                          tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAACAATCCC‑‑AATAAA‑‑AATTaaaaaaaaaaaaaa                                                                                                     >  2:8103503/1‑128 (MQ=255)
                           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAATaaaaaaaaaaaaaaaa                                                                                                   >  1:8126673/1‑128 (MQ=255)
                           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAACAATCCC‑‑ATTAAA‑‑AATTaaaaaaaaaaaaaaa                                                                                                    >  1:3420779/1‑128 (MQ=255)
                           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAACAATCACCTT‑‑‑AA‑‑AAATaaaaaaaaaaaaaaaa                                                                                                   >  1:2769668/1‑128 (MQ=255)
                           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAACAAAAACATT‑‑‑AA‑‑AAATaaaaaaaaaaaaaaaa                                                                                                   >  1:2363616/1‑128 (MQ=255)
                           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAAAAAT‑‑CCAATTAAA‑‑AATTaaaaaaaaaaaaaaa                                                                                                    >  1:10458523/1‑128 (MQ=255)
                           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCATGATCTATTTTTTTATTTTTTTAT‑ATTAACAAAT‑AAAAAAAAAAAAAT‑‑‑AAAATAAA‑‑AAATtaaaaaaaaaaaaaaa                                                                                                   >  1:5918274/1‑128 (MQ=255)
                            aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaa                                                                                                   >  1:9340758/1‑128 (MQ=255)
                             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTAT‑CTTAACAAAT‑AAAAAAAAAAAAAT‑‑AAAATTAAA‑‑AATTaaaaaaaaaaaaaaaaa                                                                                                  >  2:3522998/1‑128 (MQ=255)
                             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAATaaaaaaaaaaaaaaaaaa                                                                                                 >  1:5554817/1‑128 (MQ=255)
                             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAATaaaaaaaaaaaaaaaaaa                                                                                                 >  1:8293834/1‑128 (MQ=255)
                             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTaaaaataaaaaaaaaaa                                                                                                  >  1:9076973/1‑128 (MQ=255)
                             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑‑TAAA‑‑AAATtaaaaaaaaaaaaaaaaa                                                                                                 >  1:8949024/1‑128 (MQ=255)
                             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAACAATCACC‑‑‑TAAA‑‑AAATtaaaaaaaaaaaaaaaaa                                                                                                 >  2:10353371/1‑128 (MQ=255)
                             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAAAAATACCC‑‑TTAAA‑‑AAATaaaaaaaaaaaaaaaaa                                                                                                  >  2:8015560/1‑128 (MQ=255)
                             ggTTAATTAAAATACCATAAACTTAATAATACTAATAATGTAGATACTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCAAAAAT‑AAAAAAAAAACAATCCCAT‑‑‑‑AA‑‑AAATaaaaaaaaaaaaaaaaaaa                                                                                                >  1:5440912/1‑128 (MQ=255)
                                taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTATTTTATTTTTTTAT‑CTTCACAAAT‑AAAAAAAAAACAAT‑‑AAAAATAAA‑‑AAATaaaaaaaaaaaaaaaaaaaa                                                                                               >  1:7148219/1‑128 (MQ=255)
                                taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAAAAAACCC‑‑‑AAAAA‑‑AAATtaaaaaaaaaaaaaaaaaaaa                                                                                              >  1:6300623/1‑128 (MQ=255)
                                aaattaaAATATAATAAAATTAAAAAATAATAAAATTTATAAACTTGTTTTATATTTTTTTATTTTTTTAT‑ATAAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaaaaa                                                                                               <  2:2368969/127‑1 (MQ=255)
                                  attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAACAATCCCCATAAAAA‑‑TAaaaaaaaaaaaaaaaaaaaaaa                                                                                               >  1:4162234/1‑128 (MQ=255)
                                  ataaaaaTACCATAAACTAAAAAAATCTTATAAAGTAGCTACTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAACAATCAC‑‑ATAAAA‑‑AATTaaaaaaaaaaaaaaaaaaaaaa                                                                                             >  1:7843609/4‑127 (MQ=255)
                                    taaAATAACATAAAAATAAAAATTATTAAAATTTATATACTCGTTATCAATTTTTTTATTTTTTAAA‑ATACAAAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaactaaaaa                                                                                           <  2:2994456/128‑8 (MQ=255)
                                     aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAATAAAAAAAAAAACAATCCC‑‑ATTAAA‑‑AATTaaaaaaaaaaaaaaaaaaaaaaaa                                                                                           >  2:8160302/1‑125 (MQ=255)
                                      aaaTACCAAAAAAATAATTATTTTTTTTAAGTTTTTCCTCTTGTTTTATTTTTTTATTTTTTTAA‑TTTTAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTaaa                                                                                         <  1:1322340/128‑1 (MQ=255)
                                       aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTAT‑CTTAACAAAT‑AAAAAAAAAAAAAT‑‑AAAAATAAA‑‑AATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                        >  2:8845079/1‑128 (MQ=255)
                                       aaTACCATAAACTTAATAATTCTTATAATGTAGATACTCTTGATCTATTATTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAACAATACAC‑‑TTAAA‑‑AATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                        >  2:477006/1‑128 (MQ=255)
                                           ccATAAAAATAAAAAATTTTATAATTTATCTACTCGTTTACTATTTTTTTATTTTTTTAA‑ATTAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                    <  1:2041441/128‑1 (MQ=255)
                                            aaTAAACTATAAAATTATTATAATTTATAAACTCTTTATTTATTTTTTTATTTTTTTAT‑ATTAAAAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAaaacaaac                                                                                  <  2:8777042/127‑1 (MQ=255)
                                                aaattAATATATATTATAATTTATAAACTAGTTATTTATTTTTTTATTTTTTTAT‑ATTCAAAAAA‑AAAAAAAAAAAAATCCCC‑‑ATAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                               <  2:10014002/125‑1 (MQ=255)
                                                aaaataaaaaTTCTTAAAATTTACAACATCGTTTTATATTTTTTTATTTTTTAAT‑AATAACAAAA‑AAAAAAAAAACAAACCCC‑‑ATAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                               <  2:402612/124‑1 (MQ=255)
                                                  aattataaataatataATTTATATAATCTTTATGTATTTTTTTTATTTTTTAT‑ATTAACAAAA‑AAAAAAAAAAAAATCCCC‑ATAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                              <  2:4207184/116‑1 (MQ=255)
                                                                   tttaaaTCCTAGTTATATATTTTTTTATTTTTTTAA‑ATTAACAAAA‑AAAAAAAAAAAAATACCC‑‑ATAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtat                                                            <  2:5544299/123‑1 (MQ=255)
                                                                          ataatttttatttttttttattttttta‑‑ATATAAAAAA‑AAAAAAAAAAAAATAACCATTT‑AA‑‑ATATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                     <  2:9136112/116‑1 (MQ=255)
                                                                          acattttttCTATTTTTTTTTTTTTTTAT‑ATTAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                     <  2:9738782/120‑1 (MQ=255)
                                                                          aactatttttttttttttttttttttTAT‑TATTAAAAAA‑AAAAAAAAAAAAAAACCC‑ATTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                      <  2:3281929/116‑1 (MQ=255)
                                                                           atatttttatATTTTTTTATTTGTTTTT‑ATTAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                    <  1:8481305/119‑1 (MQ=255)
                                                                            aattttttattttttttATTT‑TTTATATTTAAAAAAA‑AAAAAAAAAAAAAATCACATTAAAA‑‑ATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                     <  2:5101061/118‑1 (MQ=255)
                                                                              ttattaattttttttATTTTTATA‑‑CTAAAAAAAA‑AAAAAAAAAAAAATACCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCAC‑attt                                               <  2:10276346/120‑1 (MQ=255)
                                                                               ttatatATTTTTTTAATTTTTTAT‑AATAAAAAAA‑AAAAAAAAAAAAATACCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCAC‑attt                                               <  2:311548/123‑1 (MQ=255)
                                                                               ttatatATTTTTTTAATTTTTTAT‑AATAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCAC‑attt                                               <  2:8981888/123‑1 (MQ=255)
                                                                                ttttttttttttttttttttttT‑ATTATCAAAA‑AAAAAAAAAAATATATCC‑TTTAAA‑‑ATTTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCAC‑attt                                               <  2:101548/122‑1 (MQ=255)
                                                                                  tCTATTTTTTTATTTTTTTAA‑TATAAAAAAA‑AAAAAAAAAAAAAAAACCCCTTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCAC‑atttt                                              <  2:5792595/128‑1 (MQ=255)
                                                                                     tattttttATTTTTTTTA‑ATACAAAAAA‑AAAAAAAAAAACATACCC‑‑TTAAA‑‑ATAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCAC‑ATTTTAttttt                                        <  1:3164598/126‑1 (MQ=255)
                                                                                     aTTTTTTTTTTTTTTTAT‑TATTAAAAAA‑AAAAAAAAAAAAAAACCC‑‑ATAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCAC‑attttatttt                                         <  2:6513361/128‑1 (MQ=255)
                                                                                      tttttttatttttttaT‑TTTAAAAAAA‑AAAAAAAAAAAAATACCCATT‑‑‑A‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCAC‑ATTTTATTTTTa                                       <  2:3650835/128‑1 (MQ=255)
                                                                                      atttattATTTTTTTAA‑AATAACAAAT‑AAAAAAAAAAAAATCCCCTTT‑‑AA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCAC‑ATTTTAttttt                                        <  2:7261393/127‑1 (MQ=255)
                                                                                       ttttttATTTGTTTAT‑ATT‑AAAAAA‑AATAAAAAAAAAATACCCTTT‑‑‑A‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCAC‑ATTTTATTTTTaaa                                     <  1:2629901/128‑1 (MQ=255)
                                                                                        tttttATTTTTTTAT‑ATAAAAAAAA‑AAAAAAAAAAAAAAAAAC‑‑TTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCAC‑ATTTTATTTTTaa                                      <  2:2639752/128‑1 (MQ=255)
                                                                                            ttttttttTAT‑ATTCAAAAAA‑AAAAAAAAAAAAATACCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCAC‑ATTTTATTTTTAAAATaa                                 <  1:9160376/126‑1 (MQ=255)
                                                                                            tATTTGTTTAT‑AATAAAAAAT‑AAAAAAAAAACAATACCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCAC‑ATTTTATTTTTAAAATaa                                 <  2:1532981/128‑1 (MQ=255)
                                                                                               ttttttAT‑ATTAAAAAAA‑AAAAAAAAAAAAAAACCC‑TTAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCAC‑ATTTTATTTTTAAAATAAg                                <  2:6405277/125‑1 (MQ=255)
                                                                                                tttttAT‑ATTCAAAAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCAC‑ATTTTATTTTTAAAATAAGata                             <  1:9915369/126‑1 (MQ=255)
                                                                                                  tttAT‑CTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAAATAAAAACAAAACAAATTTATTAAAATTCCCATTTATACCAC‑AATTTATTTTAAAAAAAAGatat                            >  2:9468530/1‑128 (MQ=255)
                                                                                                   ttAT‑ATTTACAAAA‑AAAAAAAAAAAAAAACACCTT‑‑AA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCAC‑ATTTTATTTTTAAAATAAGATAtt                           <  2:9295201/128‑1 (MQ=255)
                                                                                                   ttAT‑ATTAAAAAAT‑AAAAAAAAAAAAAATAACCTTAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCAC‑ATTTTATTTTTAAAATAAGata                             <  2:6240040/128‑1 (MQ=255)
                                                                                                    ttaaatttaaaaaT‑AAAAAAAAAAAAAAAAC‑‑TTAAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCAC‑ATTTTATTTTTAAAATAAGATAtt                           <  2:7363909/118‑1 (MQ=255)
                                                                                                        tttaaaaaaT‑AAAAAAAAAAAAAT‑‑AAATTTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCAC‑ATTTTATTTTTAAAATAAGATATTGACa                       <  2:7684473/122‑1 (MQ=255)
                                                                                                        atttaaaaat‑aaaaataaAACAATTAAC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCAC‑ATTTTATTTTTAAAATAAGATATTGACa                       <  2:1338663/122‑1 (MQ=255)
                                                                                                         ataaaaaaa‑aaaaaaaaaaaaATACCC‑‑TTAAA‑‑AAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCAC‑ATTTTATTTTTAAAATAAGATATTGACataa                    <  2:1977304/123‑1 (MQ=255)
                                                                                                           taaaaaT‑AAAAAAAAAAAAAAACAC‑‑TTAAA‑‑AAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCAC‑ATTTTATTTTTAAAATAAGATATTGACataata                  <  1:10113254/125‑1 (MQ=255)
                                                                                                           aaaaaaT‑AAAAAAAAAAAAATCCCCATAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCAC‑ATTTTATTTTTAAAATAAGATATTGAc                        <  2:7913502/125‑1 (MQ=255)
                                                                                                            taaaaaataaaaaaaaaCAATACC‑‑ATTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCAC‑ATTTTATTTTTAAAATAAGATATTGACataa                    <  2:9584472/120‑1 (MQ=255)
                                                                                                            aaaaaa‑aaaaaaaaaaaaATACAC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCAC‑ATTTTATTTTTAAAATAAGATATTGACataat                   <  2:8220478/126‑1 (MQ=255)
                                                                                                              aaaa‑aaaaaaaaaaaaATACCC‑ATTAAA‑‑ATTTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCAC‑ATTTTATTTTTAAAATAAGATATTGACataata                  <  2:6838669/128‑1 (MQ=255)
                                                                                                              aaaT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCAC‑ATTTTATTTTTAAAATAAGATATTGACATAatat                 <  2:8667480/128‑1 (MQ=255)
                                                                                                                aaaaaaaaaaaaaaaATACCATTAAAAA‑‑ATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCAC‑ATTTTATTTTTAAAATAAGATATTGACataata                  <  2:5620537/125‑1 (MQ=255)
                                                                                                                 t‑AAAAAAAAAACCATCCCCATT‑‑AA‑‑AATTAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAACTCAATTT‑ATAAAAAAAACAATAAAAACACAATTTAATTTTTAAAAAAAAATATACACAAAatataat              >  2:9380631/1‑126 (MQ=255)
                                                                                                                 t‑AAAAAAAAAAAAATACCATT‑‑‑AA‑‑AAATT‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCAC‑ATTTTATTTTTAAAATAAGATATTGACATAATATATATc            <  2:4875670/128‑1 (MQ=255)
                                                                                                                           aaCAATCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAACTAAATTTATAAAATTTACCTTTTATACAAA‑ATTTTATTTTTAAAATAAAATATTTAAAAAATTTATTTATAatata     >  2:8561897/1‑128 (MQ=255)
                                                                                                                                 |                                                                                                                                 
AGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAT‑CTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCAC‑ATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATAT  >  CP016816/202354‑202607

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑