Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4860T.58.9% 461.9 / inf 908intergenic (+264/‑411)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base T (52/259);  new base . (184/262);  total (310/598)
Fisher's exact test for biased strand distribution p-value = 2.53e-13
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.86e-06

Only 100 of 990 total aligned reads displayed.

AGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAA‑‑AAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAC  >  CP016816/202359‑202612
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aGTTAGTGTAAATAATATAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCtt                                                                                                                                    <  1:7192018/128‑1 (MQ=255)
 gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATACACtta                                                                                                                                   >  1:1011112/1‑127 (MQ=255)
 gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCtta                                                                                                                                   >  1:8551870/1‑127 (MQ=255)
     gtgtAAATAATAGAGTTAAGGTTAATTAATATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACCATCACCttaaaaa                                                                                                                               >  1:8452472/1‑123 (MQ=255)
           ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAAAAATAAAAAAAAAACAAACCAC‑‑Taaa‑‑aaaataaaa                                                                                                                    >  1:3130976/1‑128 (MQ=255)
               taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAA‑‑AAATTaaaaaaaa                                                                                                                >  1:1019482/1‑128 (MQ=255)
                agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑ATAA‑‑AAAATaaaaaaaaa                                                                                                               >  1:2731718/1‑128 (MQ=255)
                   gttaatgttaatTAAAATACCATAAACTATATAATTCATATAAAGTAGAACCTCCTGTTCTATTTTTTTATTTTTTTATCTTCACAAAAAAAAAAAAAACAAACCCC‑‑TTAA‑‑AAATTaaaaaaaaaaaa                                                                                                            <  2:9244581/128‑1 (MQ=255)
                   gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTATTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCAC‑‑ATTAA‑‑AAATTaaaaaaaaaaaa                                                                                                            >  1:1185975/1‑128 (MQ=255)
                    ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCACC‑‑TTAA‑‑AAATTaaaaaaaaaaaaa                                                                                                           >  2:8173578/1‑128 (MQ=255)
                     taattttaattaaAATAACATAAAATTAATAATTCTTATAATTTATATCCTCGTTATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAA‑‑AAATTaaaaaaaaaaaaaa                                                                                                          <  2:246714/123‑1 (MQ=255)
                     tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAA‑‑AAATTaaaaaaaaaaaaaa                                                                                                          >  1:10014824/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTTTTTATCTTCACAAATAAAAAAAAAAAAATACC‑‑ATTAA‑‑AAATTaaaaaaaaaaaaaaa                                                                                                         >  1:2526811/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCC‑‑ATTAA‑‑AAATTaaaaaaaaaaaaaaa                                                                                                         >  2:8274931/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTAAACAAATAAAAAAAAAACAATCCC‑‑‑ATAA‑‑AAAATaaaaaaaaaaaaaaaa                                                                                                        >  1:582078/1‑128 (MQ=255)
                       attttaattaaAATAAAAAAAAATTAAAAAATATTATAATTTAAATCATCTTTAACTATTTTTTTAATTTTTTATAAAAACAAATAAAAAAAAAACAAACCCC‑‑TTAA‑‑AAATTaaaaaaaaaaaaaaaa                                                                                                        <  2:4125004/125‑1 (MQ=255)
                       aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATAATTTAATTTGTTTAACTTAACAAATAAAAAAAAAAAAATACAC‑‑‑TAA‑‑AAAATtaaaaaaaaaaaaaaaa                                                                                                       >  2:10201600/1‑128 (MQ=255)
                       aGGTTAATTAAAATAACATAAAATTAATAATTATTATAATTTATATAATATTTATATATTTTATTATTTTTTTATCTTAACAAATAAAAAAAAAAAAATAAAC‑‑‑AAA‑‑AAAATtaaaaaaaaaaaaaaaa                                                                                                       >  2:7651806/1‑128 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCTTGATATATTTTTTAATTTTTTTATCTTCACAAAAAAAAAAAAAACAAAAC‑‑‑AATAA‑‑AAAATtaaaaaaaaaaaaaaaaa                                                                                                      >  2:3054352/1‑128 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTATTATAATGTAGATCATATTGATCTATTTTTTTATTTTTTTATATTAAAAAATAAAAAAAAAAAAA‑‑AAAAATTAA‑‑AAATTaaaaaaaaaaaaaaaaa                                                                                                       >  1:6170581/1‑128 (MQ=255)
                         gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAATAAAAAAAAAAAAAAAAC‑‑ATAAA‑‑AAAATaaaaaaaaaaaaaaaaaa                                                                                                      >  1:2881798/1‑128 (MQ=255)
                          gtaaataaaATACCATAAAATTAATAAATAAAAAAATTTAGATAATCTTGTTATATTTTTTTTTATTTTTATAATAAAAAAAAAAAAAAAAAAAAACCCC‑‑TTAA‑‑AAATTaaaaaaaaaaaaaaaaaaa                                                                                                     <  2:2258738/127‑1 (MQ=255)
                            aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAATAAAAAAAAAACCATCCCC‑‑TAAA‑‑AAAATaaaaaaaaaaaaaaaaaaaaa                                                                                                   >  1:7896108/1‑128 (MQ=255)
                            aattaaAATACCATAAACTTAATAATTCTTATAATGAAGATCCACGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAAAACCATTAAAA‑‑ATaaaaaaaaaaaaaaaaaaaaaa                                                                                                     >  1:7981354/1‑128 (MQ=255)
                             attaaAAAACCATAAAATAAATAATTGTTTTAATTTTTTTCCTCGTGTTTTATTTTTTTTTTTTTTTATATTAAAAAATAAAAAAAAAACAATCCCC‑‑TTAA‑‑AAATTaaaaaaaaaaaaaaaaaaaact                                                                                                  <  1:1102860/128‑3 (MQ=255)
                               taaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTAACAAATAAAAAAAAAACAAAAACC‑‑TTAA‑‑AAATTaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                >  2:7904493/1‑125 (MQ=255)
                                aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAAACCC‑‑ATAAA‑‑AAATTaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                               >  1:6765196/1‑124 (MQ=255)
                                aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCATCGTGATCTATTTTTTTATTTGTTTATATTAACAAATAAAAAAAAAACAAAACC‑‑ATAAA‑‑AAATTaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                               >  1:4833587/1‑124 (MQ=255)
                                aaaaTACCAAAAACTTATATATTTTTATAAATTATATCCACGTTATATATTTTTTTATTTTTTTTAATTAAAAAAAAAAAAAAAAAAAAACCCCTTAAA‑‑AAAAAAAAAAAAAAAAAAAAAAAAAACTa                                                                                                <  1:5314267/128‑1 (MQ=255)
                                aaaaTACAAAAAATATAATAATTATTATAATTTTTATCCTCTTTTTATATTTTTTTATTTTTTTATATTAAAAAAAAAAAAAAAAAAAATACCC‑‑TTAA‑‑AAATTAAAAAAAAAAAAAAAAAAAAACTaa                                                                                               <  2:8431198/128‑1 (MQ=255)
                                  aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCAC‑‑TTAA‑‑AAATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                             >  2:8117668/1‑128 (MQ=255)
                                  aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAA‑‑AAATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                             >  2:4365321/1‑128 (MQ=255)
                                   aTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCCATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAA‑‑AAATTaaaaaaaataaaaaaaaactaaaaacaa                                                                                            <  1:3357850/128‑11 (MQ=255)
                                   aTACCATAAAATTAATAATTTTTTTAATTTTTTTACACGTGTTCTATTTTTTTATTTGTTTAATTAAAAAAAAAAAAAAAAAAAAATCCCCTTAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAAACTaaa                                                                                              <  2:8843651/128‑1 (MQ=255)
                                   aTAACATAAAAATAATAATTTTTTAAATTTACAACCACGTTATCAATTTTTTAAATTTTTTATCTTCACAAAAAAAAAAAAAACAAACCCC‑‑ATAA‑‑AAAAT‑‑AAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                         <  2:1789696/128‑1 (MQ=255)
                                   aTAACATAAAAATAATAATTATTAATATTTTGATACAGGTTTTTTTTTTTTTTATTTTTTTTTATTAAAAAAAAAAAAAAAAAAAAACCCC‑‑TTAA‑‑AAAAT‑‑AAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                         <  1:5519710/128‑1 (MQ=255)
                                    taacaaaaaaTTTATAATTATTTTAATTTATTTCCTCGTTATATATTTTTTTATTTGTTTATATTAAAAAATAAAAAAAAAAAAATACCC‑‑TTAA‑‑AAAATAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                         <  1:8927445/122‑1 (MQ=255)
                                         tAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAA‑‑AAATTAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAct                                                                                     >  1:3523151/1‑128 (MQ=255)
                                           taattAATAATTTTTATAATTTTTTTCCTTGTTTTTTATTTTTTTTTTTGTTTATTTTCAAAAAATAAAAAAAAAAAAAAACC‑‑TTAA‑‑AAAATAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                  <  1:8690066/125‑1 (MQ=255)
                                           aaatttaaaatTATTAAAATTTATATCATTTTTATTTATTTTTTTATTTTTTTAATTTAAAAAATAAAAAAAAAAAAATCCCC‑‑TTAA‑‑AAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                                   <  2:3790356/120‑1 (MQ=255)
                                            aataaataatACTAATAATTTAGAAACTCGTGTACTATTTTTTTATTTTTTAAAATTAAAAAAAAAAAAAAAAAAAAACCCC‑‑ATAA‑‑AAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                  <  2:2041674/124‑1 (MQ=255)
                                                     atCTTTTAATGTAGATCCTCTTGATATATTTTTTTAATTTTTTATAATAAAAAATAAAAAAAAAACAATCCCC‑‑TTAA‑‑AAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaa                                                                         <  2:9511676/127‑1 (MQ=255)
                                                     atCTTATAAATTATATCCTCGTTATAAATTTTTTTATTTTTTTAAATAAAAAAAAAAAAAAAAAAAAAACCCC‑‑TTAA‑‑AAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaa                                                                         <  2:7241106/127‑1 (MQ=255)
                                                                gacatacacGTGATCTATTTTTTTATTTTCTTAACTTCCAAAATAAAAAAAAAAAAAACCCC‑‑ATAA‑‑AAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCctacta                                                              <  1:8821492/120‑1 (MQ=255)
                                                                   ataatatttatttatttttttattttttTATTTTAAAAAAAAAAAAAAAAAAAATACCCATAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                            <  2:91688/116‑1 (MQ=255)
                                                                     tatctttaattttttttttatttttttaATTTAAAAAAAAAAAAAAAAAAAAAACAC‑‑TTAA‑‑AAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                         <  2:9867120/116‑1 (MQ=255)
                                                                     cacctttatatatttttttattttttATTATTAAAAAATAAAAAAAAAAAAAACCCCTTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                          <  2:9755295/118‑1 (MQ=255)
                                                                     aactatttttttttttttttttttttTATTATTAAAAAAAAAAAAAAAAAAAAACCCATTAA‑‑AAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                          <  2:3281929/116‑1 (MQ=255)
                                                                      caattttataaTTTTATTATTTTTTTTAAATAACAAAAAAAAAAAAAAAAAAACCCATT‑‑A‑‑AAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                        <  2:8970595/118‑1 (MQ=255)
                                                                      atctataaatATTTTTTTAATTTTTTATATTAAAAAATAAAAAAAAAAAAAAAAATTTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                         <  2:5881077/119‑1 (MQ=255)
                                                                       tagttatatATTTTATTATTTTTTTATATTAAAAAAAAAAAAAAAACAATAACCATAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                        <  2:4981190/120‑1 (MQ=255)
                                                                       catttataaatttttttatttttttATATTAAAAAAAAAAAAAAAAAAAATACCATTAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                           <  2:5760328/119‑1 (MQ=255)
                                                                        atttttttttttttttATTTGTTTTTATTAAAAAAAAAAAAAAAAAAAATACCCTT‑‑‑A‑‑AAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                     <  2:6391261/119‑1 (MQ=255)
                                                                        atttatatatttttttattttttTATTATAAAAAAAAAAAAAAAAAAAATAACATT‑‑‑A‑‑AAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                     <  2:266169/121‑1 (MQ=255)
                                                                         tttatatatttttttattttttTTAATTAAAAAATAAAAAAAAAAAAATACCC‑‑ATAA‑‑AAAATAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                    <  2:7838225/122‑1 (MQ=255)
                                                                          ttttttATTTTTTTTTTTTTTTTTATTTAAAAAAAAAAAAAAAAAAATACCC‑‑TTAA‑‑AAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                    <  2:9086116/123‑1 (MQ=255)
                                                                          ttatatatttttttattttttTAAATTAAAAAATAAAAAAAAAACAATACCC‑‑TTAA‑‑AAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                    <  2:8578763/123‑1 (MQ=255)
                                                                          ttaaatATTTTTTTAATTTTTTATAATAAAAAAAAAAAAAAAAACAAAACCCTTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                     <  2:2897633/123‑1 (MQ=255)
                                                                           ttttattttttttatttttttaAATAACAAAAAAAAAAAAAAAAAACCCCAAAAAA‑‑AATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                    <  1:9139454/122‑1 (MQ=255)
                                                                           ttattATTTTTTTTTTTTTTTAAATAAAAAAAAAAAAAAAAAAAAAACCCATAAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                    <  2:937129/124‑1 (MQ=255)
                                                                           tatttatttttttattttttTATATAAAAAAAAAAAAAAAAAAAAATCACC‑‑TTAA‑‑AAAATAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                  <  1:2092972/124‑1 (MQ=255)
                                                                             tCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAA‑‑AAATTAAAAAAAAAAAAAAAAAAAACCTAAAAACAAAATATATTTATTAAAATTCACTATATAACAACattttat                                                 >  1:9618419/1‑128 (MQ=255)
                                                                               tATTTTTTTTTATGTTTATATTAAATAAATAAAAAAAAAAAAA‑‑CCCTTT‑‑A‑‑AAATTAAAAAAAAAAAAAAAAAAAAACTAATAACAAACTCTATTTCTTTAAATTCCCTATTATACCACattttatttt                                              <  2:9411732/128‑1 (MQ=255)
                                                                                atttttttatttttttATATTAAAAAAAAAAAAAAAAAAAATCCCCAT‑‑‑A‑‑AAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                             <  2:5530634/128‑1 (MQ=255)
                                                                                atttttttatttttttAAATTAAAAAAAAAAAAAAAAAAAATACCC‑‑TTAA‑‑AAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                              <  2:10490346/128‑1 (MQ=255)
                                                                                aTTTTTTTATTTGTTTATATTAACAAATAAAAAAAAAAAAAATACATT‑‑‑A‑‑AAAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                            <  1:9492180/128‑1 (MQ=255)
                                                                                 tttttttatttttttaTTTTAAAAAAAAAAAAAAAAAAAATACCCATT‑‑‑‑‑AAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                            <  2:3650835/128‑1 (MQ=255)
                                                                                   ttttttttttttTAAATTAAAAAAAAAAAAAAAAAAAAACCCCATAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                             <  2:8766996/128‑1 (MQ=255)
                                                                                     ttttttTGTTTTTATTAAAAAAAAAAAAAAAAAAAAACCCATTAAA‑‑AATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                          <  2:5588550/128‑1 (MQ=255)
                                                                                      ttATTTTTTATATTAACAAAAAAAAAAAAAACAATCCCCTT‑‑‑A‑‑AAAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                                     <  2:7349133/128‑1 (MQ=255)
                                                                                       tATTTGTTTATAATAAAAAATAAAAAAAAAACAATACCCTT‑‑‑A‑‑AAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                      <  2:1532981/128‑1 (MQ=255)
                                                                                           tttttATATTAAAAAATAAAAAAAAAAAAATACCCTTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                    <  2:6227069/126‑1 (MQ=255)
                                                                                            tgttttaaattacaAATAAAAAAAAAAACAATACCCTTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                                     <  2:9622448/117‑1 (MQ=255)
                                                                                             tttATATTAAAAAAAAAAAAAAAAACAATCCCCTTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                                  <  2:4526874/128‑1 (MQ=255)
                                                                                              tttatgataaaaaaTAAAAAAAAAAAAAAACACTT‑‑‑A‑‑AAAATTAAAAAAAAAATAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                <  2:3154341/117‑1 (MQ=255)
                                                                                              ttATCTATAAAAAAAAAAAAAAAAAAATCACC‑‑ATAA‑‑AAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                <  2:5189595/128‑1 (MQ=255)
                                                                                              ttATATTTAAAAAAAAAAAAAAAAAAATACACATAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAAATCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                                  <  1:9023296/128‑1 (MQ=255)
                                                                                                tataataacaAAAAAAAAAAAAAAAAAACCCTTAAA‑‑AATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                <  2:8901693/121‑1 (MQ=255)
                                                                                                aatatttaaaaaTAAAAAAAAAAAAATAACC‑‑TAAA‑‑AAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                               <  2:6997560/119‑1 (MQ=255)
                                                                                                 tattttaaaaaTAAAAAAAAAAAAAATTACTTTT‑‑‑‑AAATTTTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                              <  1:3845765/120‑1 (MQ=255)
                                                                                                  attaaaaaaaTAAAAAAAAAATAAAACC‑‑‑TTAA‑‑AAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                            <  1:1385741/121‑1 (MQ=255)
                                                                                                   tattaaaaaaaaaaaaaaaaaaaaaaCCATTAA‑‑AAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGAc                             <  2:10292770/122‑1 (MQ=255)
                                                                                                   atttaaaaataaaaataaAACAATTAAC‑‑TTAA‑‑AAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                            <  2:1338663/122‑1 (MQ=255)
                                                                                                    attaaaaaaaaaaaaaaaaaaaaaaCCATTAA‑‑AAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                            <  2:4825332/123‑1 (MQ=255)
                                                                                                     ttaaaaaaataaaaaaaaaCAATAACA‑‑TTAA‑‑AAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTACCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                           <  1:8076442/118‑1 (MQ=255)
                                                                                                     ttaaaaaaaaaaaaaaaaaaaaaaCCCAATAA‑‑AAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                            <  2:6499210/124‑1 (MQ=255)
                                                                                                      aaaaaaaaaaaaaaaaaaaaaCCCCTTAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                            <  2:1163104/125‑1 (MQ=255)
                                                                                                       caaaaaaaaaaaaaaaaaATCCCATT‑‑‑A‑‑AAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata                       <  2:6829766/126‑1 (MQ=255)
                                                                                                       aaaaaTAAAAAAAAAAAAATCAC‑‑ATTAA‑‑AAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataat                        <  1:8305050/126‑1 (MQ=255)
                                                                                                         aaaTAAAAAAAAAACAATCCCC‑‑TTAA‑‑AAATTAAAAAAAAAAAAAAAAAAAAAACAAAAACAAAACTCAATTTATTAAAAAACACAATTATAACAAATTTTATTTTTAAAAAAAAATATTAAAattata                       >  1:9328745/1‑128 (MQ=255)
                                                                                                         aaaTAAAAAAAAAAAAATCCCC‑‑TTAA‑‑AAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatat                      <  2:8667480/128‑1 (MQ=255)
                                                                                                          acaaaaaaaaaaaaaaATCACCATAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata                       <  1:9750577/124‑1 (MQ=255)
                                                                                                           aaaaaaaaaaaaaaaATACCCTTAAAA‑‑AATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata                       <  1:9981309/125‑1 (MQ=255)
                                                                                                             aaaaaaaaaaaaaaaaaCCATTTA‑‑AAAATAAAAAAAAAAAAAAAAAAAACTAAAAACACACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata                   <  1:8196207/127‑1 (MQ=255)
                                                                                                             aaaaaaaaaaaaaATACCCTTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatat                    <  2:8081523/127‑1 (MQ=255)
                                                                                                              aaaaaaaaaaaaaaATCCAATTAA‑‑AAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatat                    <  2:1010180/128‑1 (MQ=255)
                                                                                                                aaaaaaaaCAATCCCC‑‑TTAA‑‑AAATTAAAAAAAAAAAAAAGAAAAAATAAAAACAAACTCTATTTGTTAAAATTACCTATTATAACACATTTTATTTTTAAAATAAAATATTGAAAAAATAAATATCTa               >  2:3923870/1‑128 (MQ=255)
                                                                                                                        cAATCCCC‑‑TTAA‑‑AAATTAAAAAAAAAAAAAAAAAAAAAATAAAAACAAACTCTATTTATTAAAATTCCCTATTATAAAACATTTTATTTTTAAAATAAGATATTTAAATAATATATAGATAatttata        >  2:7982053/1‑128 (MQ=255)
                                                                                                                          aatacaatttAA‑‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat       <  2:10386318/121‑1 (MQ=255)
                                                                                                                           ataacctttAA‑‑AAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACATACTCTATTTCTTAAAATTCACTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat       <  2:3526572/122‑1 (MQ=255)
                                                                                                                                 |                                                                                                                                  
AGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAA‑‑AAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAC  >  CP016816/202359‑202612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: