Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,8951.T59.1% inf / inf 1671intergenic (+279/+179)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base . (351/331);  new base T (781/206);  total (1133/538)
Fisher's exact test for biased strand distribution p-value = 3.13e-32
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 2076 total aligned reads displayed.

TTTTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTG‑T‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATG  >  CP016816/203767‑204018
                                                                                                                                      |                                                                                                                                 
  ttAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGTCTTTTTATTATACTTATCAAAATTACAACTCTTTCAAAGTGTATTTTTTA‑GT‑‑C‑‑TTG‑‑‑t                                                                                                                                >  2:1425916/1‑128 (MQ=255)
  ttAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTATAGTCTTTTTATTATACTTATCTACATTACAAAGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTG‑‑‑t                                                                                                                                >  2:4149329/1‑128 (MQ=255)
  ttAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCAATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTTTCAACATTACAACGCCTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTG‑‑‑t                                                                                                                                <  2:7531810/128‑1 (MQ=255)
    attttttttaAAAAAAAAAAATAAAAATTTTTCATTTAATCCCATTTGTAAAAAAGCCTATGTTTTTGGCTTTTTTTTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTG‑‑‑ttt                                                                                                                              <  2:7990401/126‑1 (MQ=255)
    aaTTTTTTATATAAAAAAAAATAAAAATTTTTCATTAAAATCCATTTGTAAAAACCCCTATGTACTAGGCTTTTTATTATACTTAACAAAATTACACCGCTTTAAAAGTGTATTTTTTA‑GG‑‑C‑‑TTG‑‑‑ttt                                                                                                                              <  2:1957832/128‑1 (MQ=255)
      ttttttttATAAAAAAAAATAAAAATTTTTAATTTAAATCAATTTTTAAAAAATCCTATTTTATATGTTTTTTATTATAATTATCAAAATAACAACGCTTTAAAATTTTTTTTTTTA‑GG‑‑C‑‑ttt‑‑‑ttttt                                                                                                                            <  2:6439637/128‑1 (MQ=255)
        ttttttAAAAAAAAAAATAAAAATTTTTCAATTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTG‑‑‑ttttttt                                                                                                                          <  2:6012935/128‑1 (MQ=255)
           tttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTG‑‑‑tttttttttt                                                                                                                       >  1:4590410/1‑128 (MQ=255)
              ataAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGGATTTTTTA‑GG‑‑C‑‑TTG‑‑‑tgttttttttttt                                                                                                                    >  1:5374286/1‑128 (MQ=255)
              ataAAAAAAAATAAAAATTTTTAATTTAAACCCATTTTTAAAAAAGCCTATTTTCAAGGCTTTTTATAATAATTATCAAAATTAAAACGCTTTCAAATTGTTTTTTTTT‑GG‑‑C‑‑ttt‑‑‑ttttttttttttt                                                                                                                    <  1:10278725/128‑1 (MQ=255)
               taAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCGAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGGGTATTTTTTA‑GG‑‑G‑‑TTG‑‑‑tttttttttttttt                                                                                                                   >  1:5582582/1‑128 (MQ=255)
               taAAAAAAAATAAAAATTTTTCATTTAAAGCCA‑TTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTG‑‑‑ttttttttttttttt                                                                                                                  >  1:3537730/1‑128 (MQ=255)
                aaaaaaaaaTAAAAAATTTTCATTTTAAGCCATTTTTAAAAAATCCTATGTTCTTGGCTTTTTATTATAACTATAAAAATTACAACCCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTG‑‑‑ttttttttttttttt                                                                                                                  <  2:9467889/128‑1 (MQ=255)
                    aaaattaaaaatTTTTACTTTAAAGCCATTTGCAAAAAATCCTATGTTCTAGGCTTTTTATTATACTTTTCAACATTACAAAGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTG‑‑‑tttttttttttttttttgt                                                                                                              <  1:9394020/128‑4 (MQ=255)
                    aaaaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTG‑‑‑ttttttttttttttttttt                                                                                                              >  2:278098/1‑125 (MQ=255)
                    aaaaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTG‑‑‑ttttttttttttttttttt                                                                                                              >  1:9143108/1‑125 (MQ=255)
                    aaaaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTG‑tt                                                                                                             >  2:8780747/1‑127 (MQ=255)
                     aaaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATAATTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTT‑T‑aa                                                                                                           >  2:8240116/1‑128 (MQ=255)
                     aaaataaaaatTTTTAATTTAATCCCATTTTTTAAAAAGCTTATTTTATATGTTTTTTATTATAATTTTAAAAATTAAAACGCTTTAAAATTTTTTTTTTTT‑GG‑‑G‑‑Ttt‑‑‑tttttttttttttttttttg                                                                                                             <  1:8986463/128‑5 (MQ=255)
                      aaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTG‑‑‑tttttttttttttttttttaa                                                                                                            >  2:355409/1‑123 (MQ=255)
                      aaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTG‑‑‑ttttttttttttttttttgta                                                                                                            >  1:8521677/1‑123 (MQ=255)
                        ataaaattTTTTAATTTAAAGAATTTTTTAAAAAATACTATTTTATATGCTTTTTATTTTAATTTTAAAAATTACAACGTTTTAAAATTTTTTTTTTTA‑GG‑‑T‑‑TTT‑‑‑TTTTTTTTTTTTTTTTG‑T‑aaaaa                                                                                                        <  1:1387460/128‑1 (MQ=255)
                        ataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTT‑T‑taaaa                                                                                                        >  1:1243264/1‑128 (MQ=255)
                         ttaaaatTTTTTATTTAATTCAATTTTTAAAAAATCCTATGTTTTTGGTTTTTTATTTTTATTTTAAAAATTAAAAAGTTTTAAAATTGTTTTTTTTT‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTG‑T‑aaaaa                                                                                                        <  1:2222056/126‑1 (MQ=255)
                          ataaatTTTTAATTTAAACTCTTTTTTTAAAATTCCTTTTTTTTATGTTTTTTTTTTTAATTTTAAAAATTAAAAAGCTTTCAAA‑TGTTTTTTTTT‑TG‑‑G‑‑TTT‑‑‑GTTTTTTTTTTTTTTTG‑T‑AAAAAT‑aa                                                                                                    <  1:9708769/126‑1 (MQ=255)
                          aaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑TG‑‑C‑‑TTG‑‑‑tttttttttttttttttttttaaaa                                                                                                        >  2:6822868/1‑119 (MQ=255)
                          aaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTT‑T‑aaaaaat                                                                                                      >  2:1244932/1‑126 (MQ=255)
                          aaaaatTTTTCATAAAAATATATTTTTAAAAAAGACTATGTTTTAGTCTTTTTATTATAATTATAAACATTACAACTATTTCAAATTTTATTTTTTA‑GT‑‑C‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTG‑T‑AAAAAT‑aa                                                                                                    <  1:6429879/128‑1 (MQ=255)
                           aaaatTTTTCATTTAAATCCATTTTTAAAAAATCCTATTTTAATGGCTTTTTAATATAATTATCAAAATTACAACGCTTTCAAATTGTATTTTTTA‑GG‑‑C‑‑TTT‑‑‑TTTTTTTTTTTTTTTTG‑T‑AAAAAT‑aa                                                                                                    <  2:7105420/128‑1 (MQ=255)
                           aaaatTTTTCATTAAAATCCAATTTTAAAAAAGCCTATTTTCTATGCTTTTTATTATACATATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTG‑T‑AAAAAT‑a                                                                                                     <  1:8313011/128‑1 (MQ=255)
                            aaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTa‑a‑aaaaaa‑aag                                                                                                   >  1:9834952/1‑127 (MQ=255)
                            aaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTT‑‑‑T‑AAAAAT‑aaaat                                                                                                 >  2:6652874/1‑127 (MQ=255)
                            aaatTTTTAATTAAAATCCATTTTTAAAAAATCCTATGTTCTATGCTTTTTTTTATAATTATAAAAATAACAACGCTTTCAAATTTTATTTTTTT‑GGGTT‑‑TTT‑‑‑TTTTTTTTTTTTTTTTG‑T‑AAAAAT‑a                                                                                                     <  1:8635536/128‑1 (MQ=255)
                                ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTGTT‑TTTTTTTTTTTTTTTTT‑T‑AAAAAT‑aaaat                                                                                                 >  2:2990221/1‑127 (MQ=255)
                                ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTGTT‑TTTTTTTTTTTTTTTTG‑T‑aaaaaa‑aaaat                                                                                                 >  2:6259612/1‑127 (MQ=255)
                                ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTT‑T‑TTaaaa‑aaaaaat                                                                                               >  2:457090/1‑125 (MQ=255)
                                 tttCATTTAAATCCATTTTTAAAAAATCCTTTTTTCTTTGCTTTTTTTTTAAATTAAAAAAATAAAAACCCTTTCAAATTTTATTTTTTT‑TG‑‑CT‑TTT‑‑‑TTTTTTTTTTTTTTTTG‑T‑AAAAAT‑AAAAGTa                                                                                               <  1:10153538/128‑1 (MQ=255)
                                  ttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTT‑T‑AAAAAT‑AAAATTaa                                                                                              >  1:8093001/1‑128 (MQ=255)
                                       ttAAATGCATTTTTAAAAAACCCTATGTTTTTGTTTTTTTATTTTAATTTTCAAAATTAAAACGCTTTAAAATTGTTTTTTTTT‑TG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTG‑T‑AAAAAT‑AAAAGTAAGAttt                                                                                         <  2:9753582/128‑1 (MQ=255)
                                         aaaGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTT‑T‑TAAAAA‑AAAAATTAAAtttttg                                                                                      >  2:5258559/1‑125 (MQ=255)
                                          aataaaTTTTTAAAAAATCATATTTTATAGTCTTTTTATTATAATTTTCAAAATTAAAACGCTTTAAAAGTTTTTTTTTTA‑TG‑‑CT‑TTT‑‑‑TTTTTTTTTTTTTTTTG‑T‑AAAAAT‑AAAAGTAAGATTTGGa                                                                                      <  2:2626955/123‑1 (MQ=255)
                                           attaaTTTTTAAAAAATGATATGTTTTTTGTTTTTTATTTTACTTTTAAAAAATTAAACGGTTTTAAATTGTTTTTTTTT‑GG‑‑T‑‑TTGT‑‑TTTTTTTTTTTTTTTTG‑T‑AAAAAT‑AAAAGTAAGATTTGGAt                                                                                     <  1:2818241/124‑1 (MQ=255)
                                            gacATATGTAAAAAAGCCTTTTTTCTAGGATTTTTATTATACTTATAAACATTAAAACGATTTAAATTTGTATTTTTTT‑GG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTG‑T‑AAAAAT‑AAAAGTAAGATTTGGATCa                                                                                   <  2:2206281/126‑1 (MQ=255)
                                            cccATTTTTAAAAAATCCTATTTTCTATGCTTTTTATTATAATTATCAAAATTAAAACGCTTTCAAATTTTATTTTTTA‑GG‑‑C‑‑TTGTT‑TTTTTTTTTTTTTTTTG‑T‑AAAAAT‑AAAAGTAAGATTTGGAt                                                                                     <  1:677810/127‑1 (MQ=255)
                                                 ttttAAAAAATACTATTTTCTATTCTTTTTATTATACTTATAAACATTAAAACGCTTTCAAAGTTTATTTTTTT‑GG‑‑G‑‑TT‑‑‑‑TTTTTTTTTTTTTTTTG‑T‑AAAAAT‑AAAAGTAAGATTTGGATCAACCaaa                                                                             <  1:702422/125‑1 (MQ=255)
                                                     aaaaaaGCATATTTTATATGTTTTTTATTATAATTATAAAAATTACAACGCTTTAAAATTGTTTTTTTTA‑GG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTG‑T‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACt                                                                          <  1:240227/128‑1 (MQ=255)
                                                       aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTG‑T‑ATAAAT‑AAAAGTAAGATTTGGATCAAGCAAAACta                                                                         >  2:1107013/1‑128 (MQ=255)
                                                        aaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTT‑T‑AAAAAT‑AAAATTAATATTTTATTAAACCAAAACtat                                                                        >  2:10255598/1‑128 (MQ=255)
                                                           gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTGTT‑AAAAAA‑AAAAGTAAAATTTGGATCAACCAAAACAata‑ta                                                                    >  1:741554/1‑127 (MQ=255)
                                                            tcTATGTTTTAGGCTTTTTATTATTTTTAGCATAATTATATAGGTTTAAATTTTTATTTTTTT‑TG‑‑T‑‑TTGT‑‑TTTTTTTTTTTTTTTTG‑T‑AAAAAT‑AAAAGTAAGTTTTGGATCAACCAAAACTATA‑TCa                                                                   <  2:9218012/127‑1 (MQ=255)
                                                             cTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTT‑T‑AAAAAT‑AAATTTAATATTTGGTTCAGCAAAAAATTTA‑Taaa                                                                  >  2:908854/1‑128 (MQ=255)
                                                              tATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTT‑T‑AAAAAT‑AAAATTAATATTTGGATAACCCAAAACAATA‑Taaaa                                                                 >  1:793783/1‑128 (MQ=255)
                                                              tATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTT‑T‑AAAAAT‑AAAATTAAAAATTTGATAAAACaaaaattttaaaaa                                                                  >  1:9983904/1‑118 (MQ=255)
                                                              tATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTG‑T‑AAAAAT‑AAATGTAAGATTTTTAAAAACCAAAAATAAT‑TCaaa                                                                 >  1:5008826/1‑128 (MQ=255)
                                                              aaTGTTATAGTGTTTTTATTATTATTATAAACATTAAAAGGCTTTAAAAGTGTTTTTTTTT‑GG‑‑C‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTG‑T‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑TCaaaaa                                                               <  1:5205531/127‑1 (MQ=255)
                                                               attttCTTGTCTTTTTTATATAATTTACAATATTACCACCGATTCATAGTTTATTTTTTT‑GT‑‑G‑‑TTGTT‑TTTTTTTTTTTTTTTTG‑T‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑TCaaa                                                                 <  1:3208186/125‑1 (MQ=255)
                                                               agaacatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTG‑T‑AAAAAT‑AAAAGTTAGATTTGGTTCACCAAAAACTTGA‑TCaaaa                                                                >  2:8586328/7‑128 (MQ=255)
                                                                 gTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTG‑T‑AAAAAT‑AAAATTAAGATTTGGATAAACCAAAACTATA‑aaaaaaaa                                                              >  1:10015336/1‑128 (MQ=255)
                                                                  ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTT‑T‑AAAAAA‑AAAATTTAAAATTTGATCAACCAAAAATTTA‑taaataaat                                                             >  2:1571294/1‑127 (MQ=255)
                                                                    cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTGTT‑TTTTTTTTTTTTTTTTT‑T‑AAAAAT‑AAAAATAATATTTGG‑TGAACCAAAA‑AATA‑Taaaaaaaaaat                                                          >  1:1834369/1‑125 (MQ=255)
                                                                    cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTG‑‑‑TTTTTTTTTTATTTTTT‑T‑AAAAAT‑AAAAATAAAAATTTTATAAAACAAAAATTTA‑AAAAAAATATTa                                                          >  2:3400000/1‑128 (MQ=255)
                                                                     tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTT‑T‑AAAAATAAAAATTAATATTTGGTAAAACAAAAAATAAA‑AAAAAAAAAtt                                                           >  2:5605107/1‑128 (MQ=255)
                                                                     tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTT‑T‑AAAAAT‑AAAATTAATATTTGTATAAAACAAAAATATA‑AAAAAAAAATTa                                                          >  2:434085/1‑128 (MQ=255)
                                                                     tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTG‑T‑AAAAAT‑AAAATTAAGATTTTGATAAACCAAAACTAT‑‑TAAAAAAAAtttat                                                        >  2:2476626/1‑125 (MQ=255)
                                                                           ttttttttTAATTTTCAAAATTACAAAGGTTTTAAATTGTATTTTTTATGG‑‑T‑‑TTT‑‑‑TTTTTTTTTTTTTTTTG‑T‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATTaaaaaaa                                                    <  1:6020868/128‑1 (MQ=255)
                                                                            tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTG‑T‑AAAAAT‑AAAAGTAAAATTTGGATAAACCAAAACTATa‑taaaaaaaaataaaaaaaa                                                   >  2:7797656/1‑128 (MQ=255)
                                                                            tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTT‑T‑AAAAAA‑AAAAATAA‑ATTT‑TATAAAACAAAAAAATA‑Taaaaaaaaaaaaaaaaaaaat                                                >  1:10417842/1‑125 (MQ=255)
                                                                             ttatttaaattATCAAAATTAAAAATCTTTAAAATTGTTTTTTTTA‑TG‑‑A‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTG‑T‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATTaaaaaaaaata                                                <  2:8313663/119‑4 (MQ=255)
                                                                             ttattaTACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTT‑T‑AAAAAT‑AAAATTAAGATTTGGTTCAAACAATATAATA‑TAAAAAAAATTaaaaaaaaa                                                  >  2:235626/1‑127 (MQ=255)
                                                                             ttattaTACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTT‑TAAAAAAA‑AAAAAAAAAATATTTAAAAACCAAAACAATA‑TAAAAAAAAAAAAAAAAAAt                                                  >  1:2648856/1‑128 (MQ=255)
                                                                                ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTT‑T‑AAAAAT‑AAAATTAATATTTGGATAAACCAAAAAAAAA‑TAAAAAAAATTAAAAAAAAtatt                                               >  2:7369100/1‑126 (MQ=255)
                                                                                ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTT‑‑T‑AAAAAA‑AAAATTAAGATTTTGATCAAACAAAAATATA‑ACAAAAAAATTAAAAAAAAtatttt                                             >  2:7895740/1‑128 (MQ=255)
                                                                                   taCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTT‑T‑AAAAAA‑AAAAATAATATTTGTATAAACCAAAACAATA‑AAAAAAAAATTAAAAAAAAtagataa                                            >  1:8726955/1‑124 (MQ=255)
                                                                                    aattATCAAAATTAAAATGTTTTAATATTGTATTTTTTA‑TG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTG‑T‑AAAAAT‑AAAAGTAAGATTTGGATCAACAAAAACTATA‑TCAAAAAAATTAAAAAAAAtagtttagt                                          <  2:8120781/126‑1 (MQ=255)
                                                                                    aCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTT‑T‑AAAAAT‑AAAATTAATATTTTTATCAACAAAAAAAAAA‑TAAAAAAAATTAAAAAAAAtattttat                                           >  2:5127841/1‑127 (MQ=255)
                                                                                      tattaaaaaTTACAAAGCTTTTAAAGTGTTTTTTTTT‑TG‑‑CT‑TTT‑‑‑TTTTTTTTTTTTTTTTG‑T‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATTAAAAAAAAtagtttagtt                                         <  1:9278518/120‑1 (MQ=255)
                                                                                       tataAACATTAAAAAGATTTCAAAGTGTTTTTTTTA‑GG‑‑CTTTTT‑‑‑TTTTTTTTTTTTTTTTG‑T‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATTAAAAAAAAtagtttagtt                                         <  2:8443319/128‑1 (MQ=255)
                                                                                       tATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTGTTTTTTTTTTTTTTTTTTTT‑T‑AAAAAT‑AAAATTAATATTTGGATCAACCAAAACTATA‑TAAAAAAAATTAAAAAAAAtattttatt                                          >  2:5769042/1‑126 (MQ=255)
                                                                                       tATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTT‑T‑AAAAAT‑AAAATTAATATTTGTAAAAACCAAAAAAATA‑TCAAAAAAATTAAAAAAAAtattttatttt                                        >  1:1093821/1‑127 (MQ=255)
                                                                                        aTCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTT‑T‑AAAAAT‑AAAATTAAATTTTTGAAAAAAAAAAAAAAAA‑ACAAAAAATATAAAAAAAATATTTTAGTTgt                                       >  1:8883351/1‑127 (MQ=255)
                                                                                           aaCATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTT‑T‑AAAAAA‑AAAATTAATATTTGGTTCAACCAAAACTTTA‑TAAAAAAAATTAAAAAAATTATTTTTTTTGAttt                                    >  2:8688608/1‑128 (MQ=255)
                                                                                             cATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTGTT‑TTTTTTTTTTTTTTTTT‑T‑AAAAAA‑AAAATTAAAATTTTGTTAAACCAAAAATTAA‑TAAAAAAAATTAAAAAAAAaatttttatttatttt                                   >  2:10096501/1‑118 (MQ=255)
                                                                                             cATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTT‑T‑AAAAAT‑AAAAATAAGATTTTGATCCACCAAAACTATA‑TCAAAAAAATTTAAAAAAATAGTTAATTTGAGTTTc                                  >  2:5425397/1‑128 (MQ=255)
                                                                                              attatattgttttAAAAGTGTTTTTTTTT‑GGT‑T‑‑TTT‑‑‑TTTTTTTTTTTTTTTTG‑T‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCa                                 <  2:6932393/118‑1 (MQ=255)
                                                                                              aTTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTG‑T‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAAAATTA‑TAAAAAAAATTAAAAAAAAATTTTTATTTGAGTTTCa                                 >  2:1760591/1‑128 (MQ=255)
                                                                                               ttACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTT‑T‑AAAAAT‑AAAATTAAGATTTGGATAAACAAAAAATATA‑TAAAAAAAATTAAAAAAAATATTTTATTTTATTTTaaa                                >  2:3175002/1‑128 (MQ=255)
                                                                                               ttACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTT‑TAAAAAAT‑AAATGTATAATTTGTATCAAACAATAATATT‑TAAAAATAAATTAAAAAAAtattttatatttttttaaa                                >  2:9882710/1‑116 (MQ=255)
                                                                                                tACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTG‑T‑AAAAAA‑AAAATTAAGATTTGGATCAACCAAAAAAATA‑TCAAAAAAATTAAAAAAAATATTTTATTTTAGTTTCaaa                               >  2:390300/1‑128 (MQ=255)
                                                                                                 ttaaggCTTTTAAATTTTTTTTTTTA‑TG‑‑T‑‑TTGT‑‑TTTTTTTTTTTTTTTTG‑T‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAAt                              <  2:8907138/123‑1 (MQ=255)
                                                                                                  cAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTG‑T‑AAAAAT‑AAAATTAATATTTGTAAAAACAAAAACAAAA‑TAAAAAAAAATAAAAAAAATATTTTAGTTGAGATTAAAAta                             >  1:4247636/1‑127 (MQ=255)
                                                                                                    aCGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTT‑T‑AAAAAT‑AAAATTAAGATTTTGATAAACCAAAAATATA‑TAAAAAAAATTAAAAAAAATAGTTTATTTTATTTTCAAAtaag                           >  2:4787438/1‑125 (MQ=255)
                                                                                                         ttCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTG‑T‑AAAAAT‑AAAAGTAAAATTTGGAACAACCCAAACTAAT‑TAAAAAAAATTAAAAAAAAATTTTTAGGTGAGTTTGAAAACTggaataat                    >  1:7801424/1‑121 (MQ=255)
                                                                                                          tatatttgtTTTTTTTT‑TG‑‑T‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTG‑T‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCAtatata                   <  1:955229/122‑1 (MQ=255)
                                                                                                          tCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTT‑T‑AAAAAA‑AAAATTAATATTTGTATAAACCAAAA‑AATATTAAAAAAAATAAAAAAAAATATTTTATTGGAGTTTaaaaaaggaataaa                     >  2:10419577/1‑118 (MQ=255)
                                                                                                                tgtATTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTT‑T‑TAAAAT‑AAAAATAAAATTTGGATCAAACAAAACTATA‑TAAAAAAAATAAAAAAAAAAATATTATTTGTTTTTGAAAAGTGAATATATATTaa               >  1:3065515/1‑127 (MQ=255)
                                                                                                                 gtATTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTT‑T‑AAAAAT‑AAAATTAAGATTTTGAACAACCAAAACTATA‑TAAAAAAAATTAAAAAAAATTTTTTTGTTGAGTTTAAAATATGAATTTATAGTACa              >  1:8201581/1‑128 (MQ=255)
                                                                                                                 gtATTTTTTA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTG‑T‑AAAAAA‑AAAATTAATATTTTGTTCAACCAAAAATTAT‑TAAAAAAAATTAAAAAAAATATTTTATTTGAGTTTCAAATGTGAatatattataaa              >  2:960251/1‑122 (MQ=255)
                                                                                                                       tttA‑GG‑‑C‑‑TTGTT‑TTTTTTTTTTTTTTTTT‑T‑AAAAAT‑AAAAGTAAGTTTTGGATCAACCAAAACTATA‑TAAAAAAAATTTAAAAAAATTGTTTTTTTTATTTTAATATATGAAtatatatttaaatgtt         >  2:3731369/1‑118 (MQ=255)
                                                                                                                        ttA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTT‑T‑AAAAAA‑AAAATTAAGATTTGGATAAACCAAAAATATA‑TAAAAAAAATTAAAAAAAAATTTTTATTTTATTTTAAAATATGAAATTATATTAAAAAGGAAt       >  1:393359/1‑128 (MQ=255)
                                                                                                                         tA‑GG‑‑C‑‑TTGT‑‑TTTTTTTTTTTTTTTTT‑T‑AAAAAT‑AAAATTAAGATTTGGATCAACCAAAACTATA‑TAAAAAAAATTAAAAAAAATTTTTTAGTTTAGTTTCAAATCTGAATAAATAGTAAAAATGAAtt      >  2:9364158/1‑128 (MQ=255)
                                                                                                                                      |                                                                                                                                 
TTTTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑TTG‑‑‑TTTTTTTTTTTTTTTTG‑T‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATG  >  CP016816/203767‑204018

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑