Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,9120GT39.0% 2479.0 / inf 2019intergenic (+296/+162)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base G (348/847);  new base T (762/2);  total (1170/849)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 2150 total aligned reads displayed.

AAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑TTTTT‑TTTT‑TT‑TTTTTGT‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGG‑AATTTATGATAGAAAAAAATGGATTAGTT  >  CP016816/203785‑204039
                                                                                                                                           |                                                                                                                                   
        aaaatattttCAATTAAAGCCATTTGTAAAAAATCCTATGTTAAAGGCTTTTTATTATAATTATAAAAATTAAAAAGCTTTGAAATTT‑TA‑TTTTTTTGG‑G‑‑‑TTGT‑‑TTTTT‑TTTT‑TT‑TTTTTGT‑‑AAAAAt                                                                                                                            <  1:9694360/122‑1 (MQ=255)
         aaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTTT‑TTTT‑TT‑TTTTTGT‑‑AAAAATa                                                                                                                           >  2:2007526/1‑128 (MQ=255)
         aaaatTTTTAATTTAAATATATTTTTAAAAAATAATATTTTATATTTTTTTTATTATAATTATAAAAATTAAAACTCTTTCAAATTT‑TA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTTT‑TTTT‑TT‑TTTTTGT‑‑AAAAATa                                                                                                                           <  2:62729/128‑1 (MQ=255)
           aatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAGG‑A‑‑‑TTGT‑‑TTTTT‑TTTT‑TT‑TTTTTGA‑‑AAAAATaaa                                                                                                                         >  2:3689065/1‑128 (MQ=255)
           aatTTTTCAATAAAAGCCATTTTTAAAAACTCCTATTTTCAAGGCTTTTTATTAAAAATTCAAAAATTCAAAACCTTTCAAATTT‑TA‑TTTTTTTGG‑G‑‑‑TTGT‑‑TTTTT‑TTTT‑TT‑TTTTTGT‑‑AAAAATaaa                                                                                                                         <  1:4244571/128‑1 (MQ=255)
             tttttCTTTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGGTTTTTATTTTACTTATAAACATTACACCGCTTTCAAAGTG‑TT‑TTTTTTAGG‑C‑‑‑TTGTTTTTTTT‑TTTT‑TT‑TTTTTGT‑‑AAAAATaaa                                                                                                                         <  1:9978728/128‑1 (MQ=255)
               tttaatttaaATTAATTTTTAAAAAATAATATTTTATATGATTTTTATTATAATTATAAAAATTAAAACTCTTTAAAATTT‑TA‑TTTTTTATG‑CT‑‑TTT‑‑‑TTTTT‑TTTT‑TT‑TTTTTGT‑‑AAAAATAAAAGTa                                                                                                                     <  2:3887678/128‑1 (MQ=255)
               tttaatttaaATCCATTTGTAAAAAAGCCTATTTTCTAGGCTTTTTATTATAATTATAAACATTACAACGCTTTAAAATTG‑TA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTTT‑TTTT‑TT‑TTTTTGT‑‑AAAAATAAAAGTa                                                                                                                     <  1:9164238/128‑1 (MQ=255)
               tttaatttaaATCAATTTTTAAAAAATCATATGTTCTTTTCTTTTTTTTATAATTATAAAAATTACAAATCTTTCAAAGTT‑TA‑TTTTTTATG‑C‑‑‑TTGT‑‑TTTTT‑TTTT‑TT‑TTTTTGT‑‑AAAAATAAAAGTa                                                                                                                     <  2:9221744/128‑1 (MQ=255)
               tttCTTTAAAAGCCAATTGTAAAAAATCCTATGTTTTAGGCTTTTTTTTTTAATTAAAAAATTTAAAACTCTTTCAAAGTGTTT‑TTTTTTTGGTT‑‑‑TTT‑‑‑TTTTT‑TTTT‑TT‑TTTTTGT‑‑AAAAATAAAAGt                                                                                                                      <  1:8279389/128‑1 (MQ=255)
               tttCATTTAAAGCCATTTGTAAAAAAGCGTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACTCTTTCAAAGTG‑TA‑TTAATTAGT‑C‑‑‑TTG‑‑‑TTTTTATTTT‑TT‑TTTTTTT‑‑AAAAAAAAAAATa                                                                                                                     >  2:5610643/1‑128 (MQ=255)
                     ttaaataaaTTTTTAAAAAATTATATTTTATATTCTTTTTTTTATAATTTTAAACATTAAAATGTTTTCAAATTT‑TT‑TTTTTTTTG‑CTG‑TTT‑‑‑TTTTT‑TTTT‑TT‑TTTTTGT‑‑AAAAATAAAAGTAAGAtt                                                                                                                <  2:9493864/120‑1 (MQ=255)
                       atagtcATTTTTAAAAAATCATATTTTTTTTGTTTTTTATTTTTATTTTCAAAATTATAACGTTTTCAAAGTT‑TATTTTTTTTGG‑T‑‑‑TTT‑‑‑TTTTT‑TTTT‑TT‑TTTTTGT‑‑AAAAATAAAAGTAAGATTTgg                                                                                                             <  2:6027830/123‑1 (MQ=255)
                       aaaGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑TTTTT‑TTTT‑TT‑TTTTTTT‑‑TAAAAAAAAAATTAAAtttttg                                                                                                            >  2:5258559/1‑125 (MQ=255)
                          tccATTTGTAAAAAACCCTATGATATATGCTTTTTTTTATACTTATAAAAATTACAACGCTTTAAAAGGG‑TT‑TTTTTTATG‑C‑‑‑TTGT‑‑TTTTT‑TTTT‑TT‑TTTTTGT‑‑AAAAATAAAAGTAAGATTTGGATc                                                                                                          <  1:9545339/127‑1 (MQ=255)
                          gtcATTTTTAAAAAAGCCTATTTTATAGGCTTTTTATTATACTTATAAAAATTAAAACGGTTTCAAAGTG‑TA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTTT‑TTTT‑TT‑TTTTTGT‑‑AAAAATAAAAGTAAGATTTGGATc                                                                                                          <  2:7903091/126‑1 (MQ=255)
                              tttGTAAAAAAGCCTATGTTATAGTCTTTTTATTATAATTATCAACATTAAAACGCTTTCAAAGTG‑TA‑TTTTTTAGG‑C‑‑‑ATGT‑‑TTTTT‑TTTT‑TT‑TTTTTGT‑‑AAAAATAAAAGTAAGATTTGGATCAAcc                                                                                                      <  2:8011575/128‑1 (MQ=255)
                                  tAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAGG‑C‑‑‑TTGTTTTTTTT‑TTTT‑TT‑TTTTTTT‑‑AAATAAAAAAGTTAGTTTTGGTTCTACCaa                                                                                                    >  2:7808057/1‑128 (MQ=255)
                                     taaaGTCTATGTTTTAAGGTTTTTTATATAATTATACTCAATTAAACGCTTTTATATTG‑TT‑TTTTTTTTG‑CTTTTTT‑‑‑TTTTT‑TTTT‑TT‑TTTTTGT‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAAc                                                                                                 <  1:3135822/127‑1 (MQ=255)
                                     aaaaTCATATGTTGTTGGATTTTTTTTTTAATTATCAACATTACAACGCTTTCAAAGTG‑TT‑TTTTTTAGG‑C‑‑‑TTG‑‑‑‑TTTT‑TTTT‑TT‑TTTTTGT‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACtata                                                                                             <  1:546546/128‑1 (MQ=255)
                                      aaaGCCTATGTTTTAGGTTTTTTTTTTTACTTATCAAAATTAAAACGCTTTCAAAGTT‑TA‑TTTTTTAGG‑G‑‑‑TTG‑‑‑TTTTT‑TTTT‑TT‑TTTTTGT‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACtata                                                                                             <  1:2679093/128‑1 (MQ=255)
                                          catATTTTTTATGCTTTTTTTTATTATTTTAAAAATTAAAAAGTTTTAAAATTT‑TT‑TTTTTTAGG‑C‑‑‑TTGTT‑TTTTT‑TTTT‑TT‑TTTTTGT‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATc                                                                                           <  2:6875403/126‑1 (MQ=255)
                                           cgaTGTTCTAGGCTTTTTATTATACGTATCCACATTACAACGCGTTCAAAGTG‑TA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑TTTTT‑TTTT‑TTGTTTTTGT‑‑AAAAATAAAATTAATATTTTGAACAAGAAAAAcaaattcaa                                                                                         >  2:7343090/3‑120 (MQ=255)
                                           cTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTTT‑TTTT‑TT‑TTTTTTT‑‑AAAAATAATATTAATAATTTGAAAAACAAAAAAAATATaaa                                                                                         >  1:6372273/1‑128 (MQ=255)
                                           cTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTTT‑TTTT‑TT‑TTTTTTT‑‑AAAAATAAATTTAATATTTGGTTCAGCAAAAAATTTATaaa                                                                                         >  2:908854/1‑128 (MQ=255)
                                             attttttattttttttATAATAATTATAAAAATTACAAAGCTTTAAAATTT‑TA‑TTTTTTTTT‑G‑‑‑TTT‑‑‑TTTTT‑TTTT‑TT‑TTTTTGT‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCaaaaa                                                                                      <  1:2091535/117‑1 (MQ=255)
                                              tGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAGG‑C‑‑‑TTGTT‑TTTTT‑TTTT‑TT‑TTTTTTT‑‑AAAAAAAAATATAATATTTTGATAAAACAAAAATATAaaaaaa                                                                                       >  1:1087882/1‑128 (MQ=255)
                                               aacatAGGCTTTATATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTTT‑TTTT‑TT‑TTTTTTT‑‑AAAAATAAAATTAAGATTTGGATCAACCAAAACTATATAaaaaaa                                                                                     >  2:10252078/5‑128 (MQ=255)
                                                ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTTT‑TTTT‑TT‑TTTTTTT‑‑AAAAAAAAAAGTAAAATTTTGATAAACCAAAAATATATCataaata                                                                                    >  2:10070404/1‑126 (MQ=255)
                                                acatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑TTTTT‑TTTT‑TT‑TTTTT‑T‑‑AAAAATAAAATTAATATTTTGTTAAACCAAAAATATATAAAAAAAAt‑t                                                                                 >  2:6538711/4‑128 (MQ=255)
                                                 tCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAGG‑C‑‑‑TTGTTTTTTTT‑TTTT‑TT‑TTTTTTT‑‑AAAAAAAAAATAAAAATTTGTAACAACAAAAAATATAaaaaaaaa                                                                                     >  1:1297348/1‑128 (MQ=255)
                                                  ttttgttttttATTATATTTATCAAAATTTCAACTCTTTCAAATTG‑TA‑TTTTTTTTG‑G‑‑‑TTGT‑‑TTTTT‑TTTT‑TT‑TTTTTGT‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAt‑t                                                                                 <  1:8140776/122‑1 (MQ=255)
                                                     ggCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAGG‑C‑‑‑TTGTT‑TTTTT‑TTTT‑TT‑TTTTTTT‑‑AAAAAAAAAATTAAGATTTGGATCAACCAAAACTATATAAAAAAAAT‑Taa                                                                               >  2:5770669/1‑128 (MQ=255)
                                                        tttttATTATACTTATCAACATTACAACGCTTTCGAAGTG‑TA‑TTTTTTAGG‑C‑‑‑TTGTT‑TTTTT‑TTTT‑TT‑TTTTTTT‑‑AAAAATAAAATTAATATTTGGATCAACCAAAACTATATAAAAAAAAT‑Taaaaa                                                                            >  2:8602239/1‑128 (MQ=255)
                                                        tttttATTATAATTATATAAATTAAAAAGCTTTATAATTG‑TT‑TTTTTTTTG‑T‑‑‑TTGT‑‑TTTTT‑TTTT‑TT‑TTTTTGT‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAT‑Taaaaaa                                                                           <  1:6695553/128‑1 (MQ=255)
                                                         ttttttttttCTTATTAAAATTACAACTTTTTTATATTT‑TATTTTTTTTGG‑T‑‑‑TTT‑‑‑TTTTT‑TTTT‑TT‑TTTTTGT‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAT‑Taaaaaaa                                                                          <  1:9805539/128‑1 (MQ=255)
                                                          tttATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑TTTTT‑TTTT‑TT‑TTTTTGT‑‑AAAAATAAAAGTAAAATTTGGATAAACAAAAACTATATAAAAAAAAT‑Taaaaaaaaa                                                                        >  2:2551036/1‑127 (MQ=255)
                                                           tttttttaattATAAAAATTAAAACTTTTTTAAAGTT‑TA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑TTTTT‑TTTT‑TT‑TTTTTGT‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAT‑TAAAAAAAAta                                                                       <  2:8240906/119‑1 (MQ=255)
                                                              ttatACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAGG‑C‑‑‑TTGTT‑TTTTT‑TTTT‑TT‑TTTTTTT‑‑AAAAAAAAAAATAAATTTTGTATAAAAAAAAAAAATAtaaaaaaaatataaaaaaaata                                                                       >  2:2848274/1‑128 (MQ=255)
                                                                 taCTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTTT‑TTTT‑TT‑TTTTTTT‑‑AAAAATAAAAGTAAGATTTGGATAAACCAAAAATATATAAAAAAAAT‑TAAAAAAAAtatttta                                                                  >  1:8604769/1‑128 (MQ=255)
                                                                 taCTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTTT‑TTTT‑TT‑TTTTTTT‑‑AAAAAAAAAAATAATATTTGTATAAACCAAAACAATAAAAAAAAAAT‑TAAAAAAAAtagataa                                                                  >  1:8726955/1‑124 (MQ=255)
                                                                  aCTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAGG‑C‑‑‑TTGTT‑TTTTT‑TTTT‑TT‑TTTTTTT‑‑AAAAATAAAATTAATATTTGGATAAACAAAAACTATATCAAAAAAAT‑TAAAAAAATtatttta                                                                  >  2:4503735/1‑128 (MQ=255)
                                                                  aCTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTTT‑TTTT‑TT‑TTTTTTT‑‑AAAAAAAAAATTAAAATTTTTATAAAACAAAAATATTAAAAAAAAAT‑TAAAAAAAAtattttat                                                                 >  1:10138958/1‑127 (MQ=255)
                                                                   ttataaaaatttACAA‑GCTTTGTATGTG‑TA‑TTTTTTTGT‑G‑‑‑TTGT‑‑TTTTT‑TTTT‑TT‑TTTTTGT‑‑AAAAATAAAAGTAAGATTTGGATCAACAAAAACTATATCAAAAAAAT‑TAAAAAAAAtagtttagtt                                                               <  1:10275052/118‑1 (MQ=255)
                                                                    ttATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTTT‑TTTT‑TT‑TTTTTTT‑‑AAAAAAATAATTAAGATTTGTATAAAACAAAACAAATTCAAAAAAAT‑TAAAAAAAAaattttattt                                                               >  1:6047766/1‑128 (MQ=255)
                                                                    ttATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑TTTTT‑TTTT‑TT‑TTTTT‑T‑‑AAAAATAAAAGTATAATTTGGTTAAACCAAAAAAATATCAAAAAAAT‑TAAAAAAAAtactttagttta                                                             >  2:8342595/1‑126 (MQ=255)
                                                                     tATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTTT‑TTTT‑TT‑TTTTTTT‑‑AAAAATAAATTAAATTTTTTGAACAACAAAAAATTTTAAAAAAAAAT‑TTAAAAAAAatgttttttgt                                                              >  1:9013424/1‑123 (MQ=255)
                                                                     tATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑TTTTT‑TTTT‑TT‑TTTTT‑T‑‑AAAAATAAAATTAAGATTTGTATAAACAAAAAATATATAAAAAAATA‑TAAAAAAAAtattttagttaat                                                            >  2:9366279/1‑125 (MQ=255)
                                                                        taaaaTTACTAAGTTTTTAAATTT‑TT‑TTTTTTTTG‑T‑‑‑TTG‑‑‑TTTTT‑TTTT‑TT‑TTTTTGT‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGtt                                                          <  1:2265362/124‑1 (MQ=255)
                                                                            aTTACAACGCTTTCAAAGTG‑TA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTTT‑TTTT‑TT‑TTTTTGT‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAAAATTATAAAAAAAAT‑TAAAAAAAAATTTTTATTTGAGTTTCa                                                       >  2:1760591/1‑128 (MQ=255)
                                                                             tttaaatttttttAAATTT‑TA‑TTTTTTTGG‑T‑‑‑TTGTT‑TTTTT‑TTTT‑TT‑TTTTTGT‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCa                                                       <  2:8131696/119‑1 (MQ=255)
                                                                             ttACAACGCTTTCAAAGTG‑TA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑TTTTT‑TTTT‑TT‑TTTTTTTA‑AAAAATAAATGTATAATTTGTATCAAACAATAATATTTAAAAATAAA‑TTAAAAAAAtattttatatttttttaaa                                                      >  2:9882710/1‑116 (MQ=255)
                                                                              tACAACGCTTTCAAAGTG‑TA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTTT‑TTTT‑TT‑TTTTTTT‑‑AAAAAAAAAATTATTATTTTTATAAACCAAAACAAATAAAAAAAAAT‑TAAAAAATATTATTTAATTTATTTTaaaa                                                     >  1:4524448/1‑128 (MQ=255)
                                                                               ttaaggCTTTTAAATTT‑TT‑TTTTTTATG‑T‑‑‑TTGT‑‑TTTTT‑TTTT‑TT‑TTTTTGT‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAAt                                                    <  2:8907138/123‑1 (MQ=255)
                                                                                cAACGCTTTCAAAGTG‑TA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTTT‑TTTT‑TT‑TTTTTTT‑‑AAAAATAAAATTAAAATTTTGTTAAACCAAAAAAAAAAAAAAAAAAA‑TTAAAAAAAAAATTTATTTTTTTTTAAAATc                                                   >  1:2928257/1‑128 (MQ=255)
                                                                                 aaCGCTTTCAAAGTG‑TA‑‑TTTTTAGG‑C‑‑‑TTGT‑‑TTTTT‑TTTT‑TT‑TTTTTTT‑‑AAAAAAAAAAGTAAAATTTTATGAAACCAAAAATATTAAAAAAAAAT‑TAAAAAAAATATTTTTTTTTAGTTTaaaaaaga                                                 >  1:8875198/1‑124 (MQ=255)
                                                                                   tgttttttaattg‑tA‑TTTTTTTTT‑T‑‑‑TTT‑‑‑TTTTT‑TTTT‑TT‑TTTTTGT‑‑AATAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCa                                               <  1:939662/117‑1 (MQ=255)
                                                                                    gCTTTCAAAGTG‑TA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑TTTTT‑TTTT‑TT‑TTTTTTTTAAAAAAAAAAAATAATTTTTTTATCAAACAAAAATATATAAAAAAAAT‑TAAAAAAAAAAATTTAGATTAATTTaaaaaatgc                                                >  2:9767903/1‑123 (MQ=255)
                                                                                    gCTTTAAAATTG‑TA‑TTTTTTTTG‑C‑‑‑TTT‑‑‑TTTTT‑TTTTCTT‑TTTTTGT‑‑AAAAATTAAAGTAATATTTGGATAAAACAAAACTATATCAAAAAAAT‑TAAAAAAAAAAGTTTAGTTGATTTTCAAATCTGCa                                               <  2:880580/128‑1 (MQ=255)
                                                                                       ttCAAAGTG‑TA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTTT‑TTTT‑TT‑TTTTTTT‑‑AAAAAAAAAATTAAGAATTAGATAAACCAAAAATATATAAAAAAAAT‑AAAAAAAAAAATATAAATTGAGTTTCAAAtaatcatat                                            >  2:4295282/1‑120 (MQ=255)
                                                                                        tttatatgttttttttttAGG‑T‑‑‑TTGT‑‑TTTTT‑TTTT‑TT‑TTTTTGT‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCata                                             <  1:928742/116‑1 (MQ=255)
                                                                                        tCAAAGTG‑TA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑TTTTT‑TTTT‑TT‑TTTTTGT‑‑AAAAAAAAAATAAAAATTTTGATAAAACAAAAATTTATCAAAAAAAT‑TAAAAAAAATATTTTATTTATGTTTAAAATATGAatataa                                          >  2:7513577/1‑127 (MQ=255)
                                                                                           aaGTG‑TA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTTT‑TTTT‑TT‑TTTTTTT‑‑AAAAATAAAAGTAATATTTGGATCAACCAAAACTATATAAAAAAAAA‑TAAAAAAAAAATTTTAGTTGATTTTAAAAAAAGCAtatatat                                        >  2:10430421/1‑127 (MQ=255)
                                                                                              tg‑tA‑TTTTTTAGG‑C‑‑‑TTGT‑‑TTTTT‑TTTT‑TT‑TTTTTGT‑‑AAAAATAAAATTAAGATTTGGATAAACCAAAACAATTTAAAAAAAAT‑TAAAAAAAATAGTTTATTTTATTTTCAAATCTGCATATATATTAc                                     >  2:8713146/1‑128 (MQ=255)
                                                                                               ttta‑ttttttatt‑t‑‑‑ttG‑‑‑‑TTTT‑TTTT‑TT‑TTTTTGT‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACaa                                   <  2:5112020/126‑1 (MQ=255)
                                                                                                 tA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑TTTTT‑TTTT‑TT‑TTTTTTT‑‑AAAAATAAAAGTAAATTTTGGATAAACCAAAAATATATAAAAAAAAT‑TAAAAAAAATATTTTATTTTATTTTAAAAAATGCATAAATATTACaaa                                  >  2:8494838/1‑128 (MQ=255)
                                                                                                    ttttttAGG‑C‑‑‑TTGTTTTTTTT‑TTTT‑TT‑TTTTTTT‑‑AAAAAAAAAATTAATATTTGGATAAACCAAAAATATATAAAAAAAAT‑TAAAAAAAATAATTTTTTTTATTTACAAATAAGAATATATATTACaa                                   >  2:2237598/1‑128 (MQ=255)
                                                                                                    ttttttAGG‑C‑‑‑TTG‑‑‑TTTTT‑TTTT‑TT‑TTTTTTT‑‑AAAAATAAAATTAATATTTTGTTAAACCAAAAAAATTTAAAAAAAAT‑TAAAAAAAATATTTTTTTTTATTTTCAAATATCCATAAATAgaaaaagtg                                >  2:3088763/1‑120 (MQ=255)
                                                                                                     tttttAGG‑C‑‑‑TTGTT‑TTTTT‑TTTT‑TT‑TTTTTTT‑‑ATAAAAAAAACTATGATTTGTTAAAAACAAAAATATATAAAAAAAAT‑TAAAAAAATTTTTTAAGTTGAATTTAAAATATGCatatattataaaaat                                 >  2:1562466/1‑119 (MQ=255)
                                                                                                      ttttAGG‑C‑‑‑TTGTT‑TTTTT‑TTTT‑TT‑TTTTTGT‑‑AAAAATAAAAGTAAGTTTTGGATCAACCAAAACTTTATAAAAATAAT‑TAAAAAAAATATTTTAGTTTAGTTTCAAATAAGCATATATTTTACAAAgg                                >  1:1177281/1‑128 (MQ=255)
                                                                                                      ttttAGG‑C‑‑‑TTGT‑‑TTTTT‑TTTT‑TT‑TTTTTGT‑‑TAAAAAAAAATTAAAATTTGGATAAACAAAAAATAATTAAAAAAAAT‑TAAAAAAAATATTTTATTTGAGTTTCAAAACTTCATATATAGTTAAAAgag                               >  1:3943764/1‑126 (MQ=255)
                                                                                                          ttg‑C‑‑‑TTT‑‑‑TTTTT‑TTTT‑TT‑TTTTTGT‑‑AAAAATAAAAGTAAGATTTTGATCAACCAAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGG‑AATTTa                         <  1:8031524/126‑1 (MQ=255)
                                                                                                                ttttttttttttt‑tttt‑tt‑tttttGT‑‑AATAATAATAGTAAGTTTTGGTTCAAATAAAACTATATAAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGG‑AAttt                          <  1:7591891/120‑1 (MQ=255)
                                                                                                                ttttttttttttt‑tttt‑tt‑tttttGT‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGG‑AAttt                          <  2:2649433/120‑1 (MQ=255)
                                                                                                                tttgctttgtttt‑tttt‑tt‑tttttGT‑‑AAAAATAAAAGTTAGATTTGGATCAACCAAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGG‑AAttt                          <  1:2531666/119‑1 (MQ=255)
                                                                                                                 tttttttttttt‑tttt‑tt‑tttttGT‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGG‑AATTTa                         <  1:7271364/121‑1 (MQ=255)
                                                                                                                  ttttttttttt‑tttt‑tt‑ttttttt‑‑AAAAATAAAATTAAGATTTGGATCAACCAAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGG‑AATTTAt                        <  1:5129102/122‑1 (MQ=255)
                                                                                                                  ttttttttttt‑tttt‑tt‑tttttGT‑‑AAAAATTATAGTAAGATTTGGATATACAAAAACTATATATAATAAAT‑TAAAAATAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGG‑AATTTAt                        <  2:2394357/122‑1 (MQ=255)
                                                                                                                  tattctttttt‑tttt‑tt‑tttttGT‑‑AATAATAAAAGTAAGATTTGGATAAACCAAAACTTTATCAAAAAAAT‑TAAAAAAAATTGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGG‑AATTTAt                        <  2:5440377/122‑1 (MQ=255)
                                                                                                                  gtttttttttt‑tttt‑tt‑tttttGT‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGG‑AATTTAt                        <  1:3648229/122‑1 (MQ=255)
                                                                                                                  gtatttttttt‑tttt‑tt‑tttttGT‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGG‑AATTTAt                        <  2:1299993/122‑1 (MQ=255)
                                                                                                                    ttgtttttt‑tttt‑tt‑ttttttt‑‑AAAAATAAAAGAAAAATTTGGAAAAAACAAAAATATAAAAAAAAAAT‑TAAAAAAAATATTTTTTTTGAGTTTAAAATATAAATATATATAAAAAAGT‑AAATTAtta                      >  1:6898813/5‑126 (MQ=255)
                                                                                                                     tttttttt‑tttt‑tt‑tttttGT‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGG‑AATTTATGAt                     <  1:4839786/125‑1 (MQ=255)
                                                                                                                      ttttttt‑tttt‑tt‑ttttttt‑‑AAAAATAAAAGTAAGATTTTGATCAACCAAAAATATATAAAAAAAAT‑TTAAAAAAATATTTTATTTGAGTTTAAAATATGAATATATATTAAAAAGG‑TATTTTTtata                    >  2:1199994/3‑128 (MQ=255)
                                                                                                                      gtttttt‑tttt‑tt‑tttttGT‑‑AAAAAAAAAAATAAGATTTGGTTAAAACAAAAAAATATAAAAAAAAT‑AAAAAAAAATATTTTTTTTGATTTTAAAATATTAATATTAAGTACAAAGGAAATTTAtata                     >  1:3321639/3‑125 (MQ=255)
                                                                                                                       tttttt‑tttt‑tt‑tttttGT‑‑AAAAATAAAAGTTAGATTTTGATAAACAAAAACTATATAAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGG‑AATTTATGATAg                   <  1:1635380/127‑1 (MQ=255)
                                                                                                                         tttt‑tttt‑tt‑ttttttT‑‑AAAATTAAAATTAAGATTTGGATTAAAAAAATCTATATAAAAAAAAT‑TAATAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGG‑AATTTATGATAGaa                 <  2:3514307/128‑1 (MQ=255)
                                                                                                                         tttt‑tttt‑tt‑tttttGT‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGG‑AATTTATGATAGaa                 <  1:8468918/128‑1 (MQ=255)
                                                                                                                         tttt‑tttt‑tt‑tttttGT‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGG‑AATTTATGATAGaa                 <  1:10411212/128‑1 (MQ=255)
                                                                                                                         tttt‑tttt‑tt‑tttttGT‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGG‑AATTTATGATAGaa                 <  2:1093009/128‑1 (MQ=255)
                                                                                                                         tttt‑tttt‑tt‑tttttGT‑‑AAAAATAAAAGTAAGATTTGGATAAACCAAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGG‑AATTTATGATAGaa                 <  1:5291426/128‑1 (MQ=255)
                                                                                                                          ttt‑tttt‑tt‑ttttttt‑‑GAAAATAAAAGTAAGATTTGGATCAACAAAAAATATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTTATTTTAAAATATGAATATTTAGTAAAAATG‑AATTTATGATAaaaa                >  2:9606129/1‑128 (MQ=255)
                                                                                                                          ttt‑tttt‑tt‑tttttGT‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGG‑AATTTATGATAGaaa                <  1:7886726/128‑1 (MQ=255)
                                                                                                                          ttt‑tttt‑tt‑tttttGT‑‑AAAAATAAAAATAATATTTGGAACAACCAAAACTATATCAAAAAAAT‑TAAAAAAAAAAGTTTAATTGATTTTAAAAAATAAATATATATTAAAAAAG‑AATTTAAGATATaaa                >  1:5732293/1‑128 (MQ=255)
                                                                                                                            t‑tttt‑tt‑tttttGT‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGG‑AATTTATGATAGaaaaa              <  1:10009967/128‑1 (MQ=255)
                                                                                                                                        tttGT‑‑AAAAATAAAAGTATGATTTTGATCTAAAAAAACTATATAAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGG‑AATTTATGATAGAAAAAAATGGATTa     <  2:6724303/128‑1 (MQ=255)
                                                                                                                                          tGT‑‑ATAAATTAAAGTAAGTTTTGGATCAACCAAAACTATATCTATATAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGG‑AATTTATGATAGAAAAAAATGGATTAGt   <  2:707480/128‑1 (MQ=255)
                                                                                                                                           gT‑‑AATAATATTAGTAAGATTTGTATAAAAAAAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGG‑AATTTATGATAGCAAAAAATGGATTatca  <  2:4780143/128‑4 (MQ=255)
                                                                                                                                           gT‑‑AAAAATAAAAGTAAGATTTTGATAATACAAAACTATATCAAAAAAAT‑TAAAAAAATTAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGG‑AATTTATGATAGAAAAAAATGGATTAGtt  <  2:331057/128‑1 (MQ=255)
                                                                                                                                           gT‑‑AAAAATAAAAGTAAGATTTGGATCAAACAAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGG‑AATTTATGATAGAAAAAAATGGATTAGtt  <  2:4075796/128‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                   
AAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAGG‑C‑‑‑TTG‑‑‑TTTTT‑TTTT‑TT‑TTTTTGT‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGG‑AATTTATGATAGAAAAAAATGGATTAGTT  >  CP016816/203785‑204039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑