BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	203,937	0	C	A	33.9%	3792.1 / inf	2446	intergenic (+321/+137)	JCVSYN2_00845/JCVSYN2_00850	lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand): ref base C (701/851); new base A (620/177); total (1344/1102)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 2470 total aligned reads displayed.

TAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑C‑TTG‑‑‑TTTTTTTTTTTTTTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTT  >  CP016816/203807‑204064

     ccATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑C‑TTG‑‑‑TTTTTTTTTTTTTTTTTT‑‑‑AAAAAAAAAAGTAATATTTGGAGCaa                                                                                                                                 >  2:5297374/1‑128 (MQ=255)

           gTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑C‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑‑‑AAAAATAAAAGTAATATTTTGATaaaaaaaa                                                                                                                            >  2:7102275/1‑123 (MQ=255)

            tAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑C‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑‑‑TAAAATAAAAATAATATTTTGTTAAACCaaat                                                                                                                           >  2:2689701/1‑127 (MQ=255)

             aaaaaaGCCTATTTTTTTGG‑TTTTTTTTATAATTTATAAAAATTAAAACGATTTAAATTTTTTTTTTTTT‑GG‑CTTTT‑‑‑TTTTTTTTTTTTTTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAAc                                                                                                                          <  1:8901434/128‑1 (MQ=255)

              aaaaaGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑C‑TTGTT‑TTTTTTTTTTTTTTTTTT‑‑‑AAAAAAAAAAGTAATATTTGTATCAACCaaaaa                                                                                                                          >  2:5507048/1‑127 (MQ=255)

               aaaaGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑C‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑‑‑TAAAATAAAATTAATATTTGGTTCACACAAAAAta                                                                                                                        >  2:1253004/1‑128 (MQ=255)

               aaaaGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑C‑TTG‑‑‑‑TTTTTTTTTTTTTTTGT‑‑‑AAAAATAAAATTAAAATTTGTTTAAACAAAAAatatt                                                                                                                      >  2:2598399/1‑127 (MQ=255)

                aaagccacagTTATATGCTATTTATTAT‑AATTATCAACAATTCAACCCTTTTAAAAGGTATTTATTT‑GG‑G‑TTGT‑‑TTTTTTTTTTTTTTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACtat                                                                                                                       <  1:1168611/119‑1 (MQ=255)

                aaaGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑C‑TTGT‑‑TTTTTTTTTTTTTTTTGT‑‑‑AAAAATAAAAGTAAGATTTGTAAAAACCAAAACtat                                                                                                                       >  1:9501482/1‑128 (MQ=255)

                 aaGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑C‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑‑‑AAAAATAAAATTAATATTTGTATAACCCAAAACaata                                                                                                                      >  1:8311052/1‑128 (MQ=255)

                     cTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTAGTTTTTA‑GG‑C‑TTGT‑‑TTTTTTTTTTTTTTTTGT‑‑‑ATAAATAAAAGTAAGATTTGGATCAACAAAAAAAATATaaa                                                                                                                  >  2:3543434/1‑128 (MQ=255)

                      tttgtgttatttttttttttAT‑ATTTTTTAAAATTATAAGGTTTTTATATTGTTTTTTTTT‑GG‑G‑TTGT‑‑TTTTTTTTTTTTTTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCaa‑a                                                                                                                <  1:7561036/116‑1 (MQ=255)

                         gTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑C‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑‑‑AAAAATATAAGTAATATTTGGATAAACCAAACCTATAtaaa‑taaa                                                                                                             >  2:3764083/1‑128 (MQ=255)

                          ttCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑C‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑‑‑AAAAAAAAAAGTAAAATTTTGATAAACCAAAAATATATCat‑aaata                                                                                                            >  2:10070404/1‑126 (MQ=255)

                           catAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑C‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑‑‑AAAAAAAAAATTAATATTTGGATAAACCAAAAATATAAAAA‑AAAAAt                                                                                                           >  1:9928707/3‑128 (MQ=255)

                            ttttgttttttATTAT‑ACTTATCAAAATTAAAAAGTTTTAAAATTGTTTTTTTTT‑TG‑G‑TTGT‑‑TTTTTTTTTTTTTTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAA‑AAAAAtt                                                                                                          <  1:8179204/122‑1 (MQ=255)

                             tAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑C‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑‑‑AAAAATAAATGTAATATTTGGTTCAACCAAAACTATATCAA‑AAAAATT‑a                                                                                                        >  2:7842526/1‑128 (MQ=255)

                             tAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑C‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑‑‑AAAAAAAAAATTAATATTTTGTTAAACCAAAACTATTAAAA‑AAATATT‑a                                                                                                        >  1:5029776/1‑128 (MQ=255)

                             tAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑C‑TTGT‑‑TTTTTTTTTTTTTTTTGT‑‑‑AAAATAAAAAGTAATATTTTGATCAACCAAAAATATATCAA‑AAAAAttt                                                                                                         >  2:10247957/1‑127 (MQ=255)

                                   ttttATTAT‑ATTTTTAATAATTAAAATTTTTTAAAATTTTATTTTTTATGG‑T‑TTT‑‑‑TTTTTTTTTTTTTTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAA‑AAAAATT‑aaaaaaa                                                                                                  <  1:4190183/128‑1 (MQ=255)

                                    tttATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑C‑TTGTTTTTTTTTTTTTTTTTTTTT‑‑‑AAAAATAAAATTAATATTTGGAAAAACAAAAAATATATAAA‑AAAAATT‑aaaaaa                                                                                                   >  1:10265459/1‑128 (MQ=255)

                                    tttATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑C‑TTGTTTTTTTTTTTTTTTTTTTTT‑‑‑AAAAATAAAATATAAATTTTGTGAAACAAAAAATATATAAA‑AAAATTT‑aaaaaa                                                                                                   >  1:6496939/1‑128 (MQ=255)

                                    tttATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑C‑TTGTT‑TTTTTTTTTTTTTTTTTT‑‑‑AAAAATAAAATTAATATTTTTATAAAACAAAAATAAATAAA‑AAAAATT‑aaaaaaa                                                                                                  >  2:6259847/1‑128 (MQ=255)

                                    tttATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑A‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑‑‑AAAAATAAAATTAAATTTTTGATAAAAAAAAAAAataaaaa‑aaaaata‑aaaaaaaa                                                                                                 >  2:10408265/1‑128 (MQ=255)

                                     ttattaT‑ACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑C‑TTG‑‑‑TTTTTTTTTTTTTTTTGT‑‑‑AAAAATAAAATTAATATTTGGTTAAAACAACACAAAATAAA‑AAAAATA‑aaaaaaaaaa                                                                                               >  1:5189789/1‑126 (MQ=255)

                                      tattat‑AATTATAAACATTAAAAAGCTTTATAATTTTATTTTTTT‑GGTT‑TTT‑‑‑TTTTTTTTTTTTTTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAA‑AAAAATT‑AAAAAAAAta                                                                                               <  1:1075406/128‑1 (MQ=255)

                                             aattATCAAAATTAAAATGTTTTAATATTGTATTTTTTA‑TG‑C‑TTG‑‑‑TTTTTTTTTTTTTTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGATCAACAAAAACTATATCAA‑AAAAATT‑AAAAAAAAtagtttagt                                                                                        <  2:8120781/126‑1 (MQ=255)

                                             aCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑C‑TTGTT‑TTTTTTTTTTTTTTTTTT‑‑‑AAAAAAAAAATTAATATTTTGATAAAAAAAAAATTTATAAA‑AAAAATT‑AAAAAAAAtattttt                                                                                          >  2:1611805/1‑127 (MQ=255)

                                             aCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑C‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑‑‑AAAAATAAAAGTAATATTTGGATAAACCAAAACTATATAAA‑AAAAATT‑aaaaaaaaaattattt                                                                                         >  2:8860932/1‑120 (MQ=255)

                                               ttATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑C‑TTG‑‑‑TTTTTTTTTTTTTTTTTTTTAAAAAATAAAATTATATTTTTGAATAACAAAAAATATATAAA‑AAAAATT‑AAATAAAAaattttat                                                                                         >  2:2471634/1‑127 (MQ=255)

                                               ttATCAACATTACAAAGCTTTCAAAGTGTATTTTTTT‑GG‑G‑TTGT‑‑TTTTTTTTTTTTTTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAA‑AAAAATT‑AAAAAAAAtagtttagtt                                                                                       <  1:7880133/128‑1 (MQ=255)

                                                         tACAACGCTTTCAAAGTGTATTTTTTA‑GG‑C‑TTG‑‑‑TTTTTTTTTTTTTTTTTT‑‑‑AAAAATAAAATTAAGATTTGGATCAACCAAAAAAATATAAA‑AAAAATT‑AAAAAAAAaattttagttttttttaaatt                                                                            >  2:4551391/1‑117 (MQ=255)

                                                           cAACGCTTTCAAAGTGTATTTTTTA‑GG‑C‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAAATAATAAAA‑AAAAATT‑AAAAAAAAAATGTTAATTTTGTTTGAAAtg                                                                           >  2:3136885/1‑127 (MQ=255)

                                                           cAACGCTTTCAAAGTGTATTTTTTA‑GG‑C‑TTGT‑‑TTTTTTTTTTTTTTTTGT‑‑‑AAAAATAAAATTAATATTTGGATCAACCAAAAAAATATAAA‑AAAAATT‑AAAAAAAATTTTTAAGTTGAGTTTCAAAta                                                                           >  2:9306113/1‑127 (MQ=255)

                                                           cAACGCTTTCAAAGTGTATTTTTTA‑GG‑C‑TTG‑‑‑TTTTTTTTTTTTTTTTTT‑‑‑AAAAATAAAATTAAAATTTGGATAAACCAAAAAAATATAAA‑AAAAATT‑AAAAAAAATATTTTTTTTTATTTTAAAATCt                                                                          >  1:9591575/1‑128 (MQ=255)

                                                           cAACGCTTTCAAAGTGTATTTTTTA‑GG‑C‑TTG‑‑‑TTTTTTTTTTTTTTTTGT‑‑‑AAAAATAAAATTAAGATTTGTATCAACCAAAAAATTTTAAA‑AAAAATT‑AAAAAAAATATTTTATTTGAATTTAAAAtat                                                                          >  2:8501847/1‑126 (MQ=255)

                                                                  ttCAAAGTGTATTTTTTA‑GG‑C‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑‑‑AAAAATAAAATTAATATTTGGTTAAACCAAAAATATATAAA‑AAAAATT‑AAAAAAAAATATTTTTTTTAGTTTAAAATATGAatat                                                                    >  1:2443224/1‑128 (MQ=255)

                                                                  ttCAAAGTGTATTTTTTA‑GG‑C‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑‑‑AAAAAAAAAATTAAGAATTAGATAAACCAAAAATATATAAA‑AAAAATA‑AAAAAAAAAATATAAATTGAGTTTCAAAtaatcatat                                                                    >  2:4295282/1‑120 (MQ=255)

                                                                   tCAAAGTGTATTTTTTA‑GT‑C‑TTG‑‑‑‑‑‑TTTTTTTTTTTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGt                                                               <  1:9772633/128‑1 (MQ=255)

                                                                   tCAAAGTGTATTTTTTA‑GG‑C‑TTGTT‑TTTTTTTTTTTTTTTTTT‑‑‑AAAAATAAAAGTAAGATTTGGTGCAACCAAAAATTTTACAA‑AAAATTT‑AAAAAAAATTGTTTTTTTTAGTTTAAAAtagcaaaat                                                                    >  1:1318481/1‑120 (MQ=255)

                                                                    taatgtgtTTTTTTTT‑GG‑T‑TTG‑‑‑‑TTTTTTTTTTTTTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAg                                                                <  1:8778683/124‑1 (MQ=255)

                                                                    cAAAGTGTATTTTTTA‑GG‑C‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑‑‑AAAAATAAAATTAAGATTTTGTAAAACCAAAACTAAAAAAA‑AAAAATT‑AAAAAAAATAATTAAATTTCTTTTCAAATCTGCagattt                                                                  >  1:7194544/1‑126 (MQ=255)

                                                                      aaGTGTATTTTTTA‑GG‑C‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑‑‑AAAAATAAAATTAATATTTGGATAAACCAAAAATAAATAAA‑AAAAATT‑AAAAAAAAAATTTTATTTTAGTTTAAAATATGAatattaat                                                                >  2:834304/1‑124 (MQ=255)

                                                                      aaGTGTATTTTTTA‑GG‑C‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑‑‑AAAAATAAAATAAATATTTTTAAAAAAAAAAAATATATAAA‑AAAAATT‑AAAAAAAAAATTTTATTAAAGTTTAAAAACTAAatataatt                                                                >  1:3105733/1‑125 (MQ=255)

                                                                      aaGTGTATTTTTTA‑GG‑C‑TTGT‑‑TTTTTTTTTTTTTTTTGT‑‑‑AAAAATAAAATTAATTTTTGGTTCAACCAAAAATTTTTGAA‑AAAATTT‑AAAAAAAAAATTTTTGTGGAGTTTCAAAtgagcttttattt                                                                >  2:4096031/1‑116 (MQ=255)

                                                                          gtATTTTTTA‑GG‑C‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑‑‑AAAAATAAAAGTAAGATTTGGTTACACCAAAACTATATAAA‑AAAAATT‑AAAAAAAAAATTTAAGATGATTTTCAAATAAGCATAAATAGttaa                                                            >  2:7563288/1‑125 (MQ=255)

                                                                          gtATTTTTTA‑GG‑C‑TTGT‑‑TTTTTTTTTTTTTTTTTT‑‑‑AAAAAAAAAATTATTATTTGGATAAACCAAAAAATTTTAAA‑AAAAATT‑AAAAAAAATATTTTAGTTTATTTTAAAAGAGGAATATATAGTaaa                                                            >  2:9885788/1‑126 (MQ=255)

                                                                          gtATTTTTTA‑GG‑C‑TTGT‑‑TTTTTTTTTTTTTTTTGT‑‑‑AAAAATAAAAGTAATATTTGGTTCAACCAAAAC‑ATATAAATAAAAATT‑ATAAAAAATATTTTTTTTTATTTTCAAATCAGAatataaactaaa                                                            >  2:5711578/1‑121 (MQ=255)

                                                                          gtATTTTTTA‑GG‑C‑TTGT‑‑TTTTTTTTTTTTTTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGAAAAACCAAAAATAAATAAA‑AAAAATT‑AAAAAAAATTGTTTAGTTGATTTTCATATATGAatttattttaaa                                                            >  1:1039551/1‑122 (MQ=255)

                                                                          gtATTTTTTA‑GG‑C‑TTGT‑‑TTTTTTTTTTTTTTTTGT‑‑‑AAAAAAAAAATTAATATTTTGTTCAACCAAAAATTATTAAA‑AAAAATT‑AAAAAAAATATTTTATTTGAGTTTCAAATGTGAatatattataaa                                                            >  2:960251/1‑122 (MQ=255)

                                                                               ttttA‑GG‑C‑TTG‑‑‑TTTTTTTTTTTTTTTTTT‑‑‑AAAAAAAAAAGTTATAATTTGATACAAAAAAAAAAAATAAA‑AAAAAAT‑AAAAAAAAAAATTTTTTTTAGTTTAAAATAAGAAAATAAATTAAAAAGGaa                                                      >  2:9479070/1‑128 (MQ=255)

                                                                                       tttttttttttttttttttttttttGT‑‑‑AAAAATAAAAGTAATATTTGTATCAACCAAAAATATATCAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAtt                                                    <  1:1863233/119‑1 (MQ=255)

                                                                                        ttttttttttttttttttttttttGT‑‑‑AAATATAAAAGTAAGATTTGGATCAATTAAAACTATATCAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                                                   <  2:6929484/120‑1 (MQ=255)

                                                                                        tgggttgtttttttttttttttttGT‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                                                   <  1:5565954/120‑1 (MQ=255)

                                                                                         tttttttttttttttttttttttGT‑‑‑AATAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa                                                  <  2:9754488/121‑1 (MQ=255)

                                                                                          ttttttttttttttttttttttGT‑‑‑AATAATAAAAGTAAGATTTGGATAAATCATAAATATATCAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                                 <  2:5122737/122‑1 (MQ=255)

                                                                                             gttgtttttttttttttttGT‑‑‑AAAATTAAAAGTAAGATTTGGATCAACCAAAACTATATCAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGAt                                              <  1:3670168/124‑1 (MQ=255)

                                                                                                ttttttttttttttttGT‑‑‑AAAAATAAAAGTTAGATTTGGATAAAAAAAAACTATATAAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGa                                           <  1:3411333/128‑1 (MQ=255)

                                                                                                 tttttttttttttttGT‑‑‑AATATTATTAGTAAGATTTGTATAAAATATAATTATATTAA‑AAAAATT‑AAATAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                                          <  1:6259612/128‑1 (MQ=255)

                                                                                                 tttttttttttttttGT‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                                          <  2:7957076/128‑1 (MQ=255)

                                                                                                  tttttttttttttttt‑‑‑AAAAAAAAAATTAATTTTTGGATAAACCAAAAATATATAAA‑AAAAATT‑AAAAAAAATATTTTTTTTTAGTTTAAAATATGAAAATAATTTAAAAAATAATTTATTATATaaa                                         >  2:1090880/1‑128 (MQ=255)

                                                                                                   ttttttttttttttT‑‑‑AAAAAAAAAAGTAAAATTTTTAAAAACCAAAACAAATAAAA‑AAAAATT‑AAAAAAAAATATTTATTTTATTTTAAAATATGAATAAATAAAAAAAATGAATTTATTATTAaaaa                                        >  1:9223654/1‑128 (MQ=255)

                                                                                                    ttttttttttttGT‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa                                       <  1:10009967/128‑1 (MQ=255)

                                                                                                      ttttttttttGT‑‑‑AATATTAAAAGTAAGATTTGTTTCAACCTAAACTATATCAA‑AAAAATT‑TAAATAAATCGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaaa                                     <  1:10137960/128‑1 (MQ=255)

                                                                                                         tttttttGT‑‑‑AAATATATAATTAATTTTTGGATTAAAAAAAACTATATAAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTAAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaatgga                                  <  1:4735682/128‑5 (MQ=255)

                                                                                                            ttttGT‑‑‑ATAATTATAAGTATTATTTGTATTATTAAAAAATATATAAT‑AAAATTT‑AAAAATAATATTTTAGTTGAGTTTAAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAtt                               <  1:669544/128‑1 (MQ=255)

                                                                                                            ttttGT‑‑‑AAAAATATAAGTAAGATTTGGATAAACAAAAACTATATAAA‑AAAAATT‑AAAAAATATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAtt                               <  1:2153191/128‑1 (MQ=255)

                                                                                                              ttGT‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat                             <  1:8641471/128‑2 (MQ=255)

                                                                                                               tGT‑‑‑AAAAATAAAATTAATATTTGTATAAACCAAAACTATATCAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGt                            <  2:3367866/128‑1 (MQ=255)

                                                                                                                gT‑‑‑AAATATATAAGTAAGATTTGGATTAACCAAAACTATATAAA‑AAATATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGtt                           <  1:6881342/128‑1 (MQ=255)

                                                                                                                    tatatattaaaTTAAGTTTTTGATTAATCATATATATATCTA‑AATAATT‑AAATATAATAGTTTAGTTGTGTTTCAAATCTGCATATATAGTACATAGGAATTTATGATAGAAAAAAATGGATTatcaa                          <  1:1572780/120‑5 (MQ=255)

                                                                                                                      taaaTATATGTAATATTTGTATCAAAATAAAATATATCAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGAt                        <  2:2288728/127‑1 (MQ=255)

                                                                                                                      aaatTAAAAGTAAGATTTGGATTAAGCAAAAATATATCAA‑AAAAATT‑AAAAAAAATATTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaact                        <  2:4823870/128‑7 (MQ=255)

                                                                                                                      aaaaTAAAAGTAAGATTTTGATCAAAAAAAAATATATCAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGAt                        <  2:7356287/128‑1 (MQ=255)

                                                                                                                      aaaaTAAAAGTAAGATTTGGATGATCCAAAACTATATCAA‑ATAAATT‑AAAAATAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGAt                        <  2:3913488/128‑1 (MQ=255)

                                                                                                                        aaaaaaaGTAAGATTTGGATCAACCAAAACTATATCAA‑AAAAATTAAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAATGAATTTATGATAGAAAAAAATTGATTACTTGATa                       >  1:3254736/4‑128 (MQ=255)

                                                                                                                        aaTAAAAGTAAGATTTGTATCAACCAAAACTATATCAA‑AAAAATT‑‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAAt                     <  1:9051512/128‑1 (MQ=255)

                                                                                                                          tAAAAGTAAGATTTGGATCAACCAAAACTATATCAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                    <  1:2653874/128‑1 (MQ=255)

                                                                                                                          tAAAAGTAAGATTTGGATCAACCAAAACTATATCAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                    >  2:2904225/1‑128 (MQ=255)

                                                                                                                           aaaaTTAAGATTTGTATAAACCAAAAATATATCAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGTAATTTATGATAGAAAAAAATGGATTatcaactaatcc                   <  2:8233996/128‑12 (MQ=255)

                                                                                                                            aaaGTAAGATTTGGATCAAAAAAAAATATATCAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCa                  <  1:5810933/128‑1 (MQ=255)

                                                                                                                             aattAAGATTTGTATAAAATAAAACTATATCAA‑TATATTT‑AAAAAATATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt                 <  2:1863274/125‑1 (MQ=255)

                                                                                                                             aaGTAAGATTTGGATCAAACAAAAATATATCAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt                 <  2:1410443/128‑1 (MQ=255)

                                                                                                                              aGTAATTTTTTGATCTAACAAAAATATATAAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATATGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtt                <  1:6003160/128‑1 (MQ=255)

                                                                                                                               gTAAGATTTGGATCAACCAAAACTATATCAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGAt                        >  2:6805391/1‑119 (MQ=255)

                                                                                                                               gTAAGATTTGGATCAACCAAAACTATATCAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttt               <  2:9008007/128‑1 (MQ=255)

                                                                                                                                tAAGATTTGGATCAACCAAAACTATATCAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATTGAATAGTTGATTATCAAtgtt              >  1:2874803/1‑128 (MQ=255)

                                                                                                                                tAAGATTTGGATCAACCAAAACTATATCAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttt              <  1:3937071/128‑1 (MQ=255)

                                                                                                                                 tagttttGGTTGATCCAAATCTATATCAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttttt             >  2:87402/5‑128 (MQ=255)

                                                                                                                                 aaGATTTGGATCAACCAAAACTATATCAA‑TAAAATT‑AAAATAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttttt             <  1:8020371/128‑1 (MQ=255)

                                                                                                                                 aaGATTTGGATCAACCAAAACTATATCAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttttt             <  2:9102596/128‑1 (MQ=255)

                                                                                                                                 aaGATTTGGATCAACCAAAACTATATCAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCAAttttt             >  1:530600/1‑128 (MQ=255)

                                                                                                                                  aGATTTGGATCAACCAAAACTATATCAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt            >  2:5988068/1‑128 (MQ=255)

                                                                                                                                  aGATTTGGATCAACCAAAACTATATCAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt            >  2:8637608/1‑128 (MQ=255)

                                                                                                                                  aGATTTGGATCAACCAAAACTATATCAA‑AAAAATT‑‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAATAAATGGATTAGTTGATAATCCATTTTTTa           >  2:6530857/1‑128 (MQ=255)

                                                                                                                                   gATTTGGATCAACCAAAACTATATCAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTa           >  1:2300235/1‑128 (MQ=255)

                                                                                                                                    aattGGATCAACAAAAACTATAATAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTATCAACTAATCCAtttttttc          <  1:9386955/126‑3 (MQ=37)

                                                                                                                                       tGGATCAACCAAAACTATATCAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAttt       <  2:208991/128‑1 (MQ=255)

                                                                                                                                          aTCAACCAAAACTATATCAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAttttct    >  1:4492205/1‑126 (MQ=255)

                                                                                                                                          aTCAACCAAAACTATATCAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGt    >  1:852693/1‑128 (MQ=255)

TAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑C‑TTG‑‑‑TTTTTTTTTTTTTTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAA‑AAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTT  >  CP016816/203807‑204064

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`