Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,9520CA33.0% 4200.8 / inf 2564intergenic (+336/+122)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base C (723/926);  new base A (613/199);  total (1360/1204)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 2654 total aligned reads displayed.

AAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑T‑TTTTTTTTTTTTTTTGT‑AAAAA‑TAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAATTATTAAGC  >  CP016816/203824‑204079
                                                                                                                                      |                                                                                                                                
    cTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑T‑TTTTTTTTTTTTTTTTT‑AAAAA‑TAATATTAATAATTTGAAAAACAAAAAAAATATaaa                                                                                                                                >  1:6372273/1‑128 (MQ=255)
    cTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑T‑TTTTTTTTTTTTTTTGT‑AATAA‑TAAAAGTAATTTTTGGAACAACACAAAATTTATCaa                                                                                                                                >  1:8313506/1‑128 (MQ=255)
         acatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑TATTTTTTTTTTTTTTTGT‑AAAAA‑AAAAAAAAATATTTTGAAAAAACAAAACAATAACaaaaaaa                                                                                                                           >  2:7425742/4‑128 (MQ=255)
           cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑T‑TTTTTTTTTATTTTTTT‑AAAAA‑TAAAAATAAAAATTTTATAAAACAAAAATTTAAAAAAAATATTa                                                                                                                        >  2:3400000/1‑128 (MQ=255)
            tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑T‑TTTTTTTTTTTTTTTGT‑AAAAA‑TAAAATTAAGATTTTGATAAACCAAAACTAT‑TAAAAAAAAtttat                                                                                                                      >  2:2476626/1‑125 (MQ=255)
             aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTT‑T‑TTTTTTTTTTTTTTTTT‑AAAAA‑TAAAATTAATATTTGGATAAACCAAAAATATATAAAAAAAATTa                                                                                                                        >  2:3857963/1‑128 (MQ=255)
                 ttttttttATACTTTTAAAAATTAAAATGTTTTTAATTTTTATTTTTTATGTTTGT‑‑T‑TTTTTTTTTTTTTTTGT‑AAAAA‑TAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTa‑aaaaa                                                                                                                  <  2:7929283/128‑1 (MQ=255)
                  ttttATTATAATTATAAAAATTACAAAGCTTTAAAAGTGTATTTTTTATGCTTG‑‑‑‑‑‑‑TTTTTTTTTTTTTGT‑AAAAA‑TAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTA‑AAAAAAAtag                                                                                                             <  1:3661015/128‑1 (MQ=255)
                   tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTTTT‑TTTTTTTTTTTTTTTTT‑AAAAA‑TAAAATTAATATTTGGAAAAACAAAAAATATATAAAAAAAATTa‑aaaaa                                                                                                                  >  1:10265459/1‑128 (MQ=255)
                   tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTT‑T‑TTTTTTTTTTTTTTTTT‑AAAAA‑TAAAATTAATATTTTTATAAAACAAAAATAAATAAAAAAAATTa‑aaaaaa                                                                                                                 >  2:6259847/1‑128 (MQ=255)
                   tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑T‑TTTTTTTTTTTTTTTTT‑AAAAA‑AAAAAATAA‑ATTT‑TATAAAACAAAAAAATATaaaaaaaaaaa‑aaaaaaaaat                                                                                                             >  1:10417842/1‑125 (MQ=255)
                      attatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑T‑TTTTTTTTTTTTTTTTT‑AAAAA‑TAAAATTATTATTTGTGTACACCAAAA‑AATAAAAAAAAAAATATAAAAAAAtag                                                                                                             >  1:7692507/1‑128 (MQ=255)
                          aacataacAAAATTACAACGCATTCAAAGTGTTTTTTTTAGGTTTG‑‑‑T‑TTTTTTTTTTTTTTTGT‑AAAAA‑TAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTA‑AAAAAAAtagtttag                                                                                                        <  1:8907457/121‑1 (MQ=255)
                           aCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑T‑TTTTTTTTTTTTTTTTT‑AAAAA‑TAAAAGTAATATTTGGATAAACCAAAACTATATAAAAAAAATTa‑aaaaaaaaattattt                                                                                                        >  2:8860932/1‑120 (MQ=255)
                           aCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑T‑TTTTTTTTTTTTTTTTT‑AAAAA‑AAAAATTAAAATTTTTATAAAACAAAAATATTAAAAAAAAATTA‑AAAAAAAtattttat                                                                                                        >  1:10138958/1‑127 (MQ=255)
                                taaaCATTAAAATGTTTTAAAATTTTATTTTTTTTGCTTGTT‑T‑TTTTTTTTTTTTTTTGT‑AAAAA‑TAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGa                                                                                                    <  2:9097598/126‑1 (MQ=255)
                                tCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑T‑TTTTTTTTTTTTTTTTT‑AAAAA‑AAAAAATAAGAATTGTATACACCAAAAATAAATCAAAAAAAATA‑AAAAAAATATTTTATTTgtc                                                                                                   >  1:3118695/1‑126 (MQ=255)
                                     aTTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑T‑TTTTTTTTTTTTTTTTT‑AAAAA‑TAAAAGTAAAATTTGGATAAACCAAAACTATATAAAAAAAATTA‑AAAAAAATATTTTTTTTGACTTACa                                                                                              >  2:1893713/1‑128 (MQ=255)
                                      ttACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑T‑TTTTTTTTTTTTTTTTT‑AAAAA‑TAAAATTAATATTTTTATAAACCAAAACTATATAAAAAAAAATT‑AAAAAAATATTTTTGTTTATTTTaaa                                                                                             >  2:10263257/1‑128 (MQ=255)
                                      ttACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑T‑TTTTTTTTTTTTTTTTT‑AAAAA‑TAAAATTAAAATTTTGATAAACCAAAAATAAATAAAAAAAATTA‑AAAAAAAAATTTTATTTTATTTTaaa                                                                                             >  2:7172658/1‑128 (MQ=255)
                                      ttACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑T‑TTTTTTTTTTTTTTTTTAAAAAA‑TAAATGTATAATTTGTATCAAACAATAATATTTAAAAATAAATT‑AAAAAAAtattttatatttttttaaa                                                                                             >  2:9882710/1‑116 (MQ=255)
                                           aCGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑T‑TTTTTTTTTTTTTTTTT‑AAAAA‑TAAAAGTAATATTTGGATCAACAAAAACTATATAAAAAAAATT‑‑AAAAAAATATTTTATTTGAGTTTAAAATATGc                                                                                       >  2:9324403/1‑128 (MQ=255)
                                             gCTTTCAAAGTGTATTTTTTAGGCTTGTTTT‑TTTTTTTTTTTTTTTTT‑AAAAA‑TAAAATTAATATTTGGTTAAACCAAAAAAATATAAAAAAAAATA‑AAAAAAATATTTTTTATGATTTTCAAATATg                                                                                        >  2:5685701/1‑128 (MQ=255)
                                                 tCAAAGTGTATTTTTTAGGCTTGT‑‑T‑TTTTTTTTTTTTTTTGT‑AAAAA‑TAAAAGTAAGATTTTGATAAACCAAAACTATATAAAAAAAATTA‑AAAAAAAAATTTTATTTGATTTTCAAATATGAataaa                                                                                  >  2:4404687/1‑126 (MQ=255)
                                                 tCAAAGTGTATTTTTTAGGCTTGT‑‑T‑TTTTTTTTTTTTTTTGT‑AAAAA‑TAAAAGTAAGATTTGGATCAACCAAAAATTTATAAAAAAAATTA‑AAAAAAATTTTTTTTTTTAGTTTCAAATATGCatata                                                                                  >  2:1639931/1‑128 (MQ=255)
                                                    tttgtatttttttTGTTTTT‑‑‑T‑TTTTTTTTTTTTTTTGT‑AAAAA‑TAAAAGTAAGATTTTTATCAACCAAAACTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGt                                                                              <  1:6763404/121‑1 (MQ=255)
                                                    aaGTGTATTTTTTAGGCTTGT‑‑T‑TTTTTTTTTTTTTTTTT‑AAAAA‑TAAAAGTAATATTTGGATCAACCAAAACTATATAAAAAAAAATA‑AAAAAAAAATTTTAGTTGATTTTAAAAAAAGCAtatatat                                                                               >  2:10430421/1‑127 (MQ=255)
                                                             ttttAGGCTTG‑‑‑T‑TTTTTTTTTTTTTTTTT‑AAAAATTAAAATAAATTTTTTGATCAACCAAAAATTTTTAAAAAAAATTA‑AAAAAAATATTTTTTTTTATTTTTAAAAATGCTtatatataaaaaagaa                                                                      >  2:9728922/1‑118 (MQ=255)
                                                                 ttttttgtttt‑tttttttttttttttGT‑AAAAA‑TAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAt                                                                    <  1:2329239/118‑1 (MQ=255)
                                                                    tttaggtttgttttttttttttttGT‑AAAAA‑TAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                                                                  <  1:1215716/118‑1 (MQ=255)
                                                                     ttttttt‑ttttttttttttttttt‑AAAAA‑TAAAAGTAAGTTTTGGATCAACCAAAACTATATCAAAAAATTTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                                                <  2:5462290/122‑1 (MQ=255)
                                                                      tattattatttttttattttttGT‑AAAAA‑TAAAAGTAAGATTTGTATCAACCAAAACTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGATATTCAAATCTGCATATATAGTACAAAGGAATTTAt                                                                <  1:9487010/120‑1 (MQ=255)
                                                                        gttt‑ttttttttttttttttt‑AAAAA‑TAAAATTATGATTTGGATAAACCAAAAATATATAAAAAAAATTA‑AAAAAAATTTTTTTTTTTAGTTTCAAATCTGCATATATTTTAATAAGGAATTtattat                                                             >  2:2606087/4‑128 (MQ=255)
                                                                         gtt‑ttttttttttttttttt‑AAAAA‑TAAAAGTAAGATTTGGTTAACCCAAAAATTTATAAAAAAAATTA‑AAAAAAATAGTTTAGTTGATTTTCAAATCTGAATATATATTAAAAAGAAATTTATtata                                                            >  2:9456558/3‑128 (MQ=255)
                                                                         gtt‑ttttttttttttttttt‑AAAAA‑AAAAAGTAATATTTGGAAAAAAAAAAAAAATATAAAAAAAAATA‑AAAAAAATAATTTATTTGAATTTAAAATATTAATAATTATTAAAAATTAATTTATGAtt                                                            >  1:2184817/3‑127 (MQ=255)
                                                                          tt‑tttttttttttttttGT‑AAAAA‑TAAAAGTTAGATTTTGATAAACAAAAACTATATAAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAg                                                           <  1:1635380/127‑1 (MQ=255)
                                                                           t‑ttttttttttttttttt‑AAAAA‑TAAAAGTAATATTTGGATCAACCAAAACTATATCAAAAAAATTA‑AAAAAAATATTTTATTTGATTTTAAAATTTGCAATTATATTAAAAATGAATTTAtttaata                                                          >  1:9599463/1‑122 (MQ=255)
                                                                             tttttttttttttttGT‑AAATA‑TAAAAGTAAGTTTTTTATAAAAAAAAATTATATAAAAAATATTA‑AATAAAATAGTTTAGTTGATTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                                                         <  1:9210900/128‑1 (MQ=255)
                                                                                ttttttttttttGT‑AAAAA‑TATATGTAAGATTTGGATCAAACAAAACTATATCAAAAAAATTA‑AAATAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa                                                      <  2:402126/128‑1 (MQ=255)
                                                                                ttttttttttttGT‑AAAAA‑TAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa                                                      <  1:10009967/128‑1 (MQ=255)
                                                                                ttttttttttttGT‑AAAAA‑TAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa                                                      <  1:7900512/128‑1 (MQ=255)
                                                                                  ttttttttttGT‑AAAAA‑TAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaaa                                                    <  1:9043013/128‑1 (MQ=255)
                                                                                    ttttttttGT‑AAAAA‑AAAAATTAAGATTTGGATCAACCAAAACTATATAAAAAAAATAA‑AAAAAAATATTTTAGTTGAGTTTAAAAAGTAAATATATATTAAAAAGGAATTTATTATAGtaaaaaaat                                                  >  1:5572221/1‑126 (MQ=255)
                                                                                       ttttttT‑AAATA‑TAATATTAATATTTTTATAAAGAATAATTATATCAAAAATTTTA‑AAAAAAATATTTTAGTTTAGTTTCAAATCTGTATATATAGTAAAAAGGAATTTATGATAGAAAAAAATGGAt                                               <  1:3394347/128‑1 (MQ=255)
                                                                                         tttGT‑ATAAA‑TAAAAGTAATATTTTGATAAAATAAAAATTTATAAATAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTa                                             <  1:1940390/128‑1 (MQ=255)
                                                                                         tttGT‑AAAAA‑TTAAATTAAGATTTGGATCAACCAAAAATATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTa                                             <  1:5332378/128‑1 (MQ=255)
                                                                                          ttGT‑AAAAA‑TAAAAGTAAGATTTGGATCAACGAAAACTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg                                            <  2:8484507/128‑1 (MQ=255)
                                                                                           ttt‑AAAAA‑TAATAGTTATATTTGGATTATCCTAAATTATATCTAAAAAATTA‑AAAAATATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGt                                           <  1:4327969/126‑1 (MQ=255)
                                                                                           tGT‑ATAAA‑TAATTGTTAGATTTTTATTAAAGTAAAATATATCAATTATATTA‑AAAAAATTAGTTTAGTTGAGTTTCAAATCTGAATATATAGTTCAAAGGAATTTATGATAGAAAAAAATGGATTAGt                                           <  2:5959461/128‑1 (MQ=255)
                                                                                           tGT‑AAAAA‑TAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGTAATTTATGATAGAAAAAAATGGATTAGt                                           <  2:8320380/128‑1 (MQ=255)
                                                                                            tt‑AAAAT‑TATAAGTAATATTTTGATAAAACAAAATTATTTCTAAAATATTT‑AAAAAAATAGTTTATTTGAGTTTTAAATTTGCATATATAGTACAAAGTAATTTATGATAGAAAATAATGGTTTAGtt                                          <  1:8649880/127‑1 (MQ=255)
                                                                                               aaaaa‑TAAAATTAAGATTTTGATCAACCATAAATATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGTGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGa                                        <  1:4096031/128‑1 (MQ=255)
                                                                                                aaaa‑taaaatTAAGATTTGTATAAACCAAAACTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGAt                                       <  2:1008418/128‑1 (MQ=255)
                                                                                                aaaa‑TATAATTTAGATTTGGATAAACATAATCTATATAATAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGAt                                       <  1:5764317/128‑1 (MQ=255)
                                                                                                aaaa‑TAAAAGTATGATTTGCATCAACCTAAACTTTATCAAATAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATTTAGTACATAGGAATTTATGATAGAAAAAAATGGATTAGTTGAt                                       <  2:8076014/128‑1 (MQ=255)
                                                                                                 aaa‑TAAAAGTAAGATTTTGATCTATCAAAACTATATAAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaacta                                      <  2:1479601/128‑8 (MQ=255)
                                                                                                     tataaGTAAGATTTTGATAAAAAAAAACTATATAAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                                   <  2:3638911/125‑1 (MQ=255)
                                                                                                     tAAAAGTAAGTTTTGTATAAACAAAAAATATATCAAAAAAATTA‑AAAAAAATAGTTTATTTGATTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                                   <  2:2100436/128‑1 (MQ=255)
                                                                                                     tAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                                   <  1:2653874/128‑1 (MQ=255)
                                                                                                      ataaGTAAGATTTGTATATAACATAACTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                                  <  2:4203290/126‑1 (MQ=255)
                                                                                                       aaaGTAAGATTTGTATCAACCAAAACTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCa                                 <  1:9366279/128‑1 (MQ=255)
                                                                                                       aaaGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTAATGATAGAAAAAAATGGATTAGTTGATATTCCa                                 >  1:7327028/1‑128 (MQ=255)
                                                                                                        aaGTAAGATTTGGATCTACCAAAAGTATATCAAAAAAATTA‑ATAAATATAGTTTAGTTGAGTTTCATATCTGCATATATAGTACAAAGGTATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt                                <  2:2723227/128‑1 (MQ=255)
                                                                                                        aaGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATTGATTAGTTGATAATACAt                                >  2:6829914/1‑128 (MQ=255)
                                                                                                        aaGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt                                <  2:8223123/128‑1 (MQ=255)
                                                                                                            tagttttGGTTGATCCAAATCTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttttt                            >  2:87402/5‑128 (MQ=255)
                                                                                                            aaGATTTGGATCAACCAAAACTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttttt                            >  2:5042036/1‑128 (MQ=255)
                                                                                                            aaGATTTGGATCAACCAAAACTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAatttt                            >  1:8050639/1‑128 (MQ=255)
                                                                                                             aGATTTGGATCAACCAAAACTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt                           >  2:8637608/1‑128 (MQ=255)
                                                                                                              gATTTGGATCAACCAAAACTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTa                          >  1:5102543/1‑128 (MQ=255)
                                                                                                              gATTTGGATCAAAAAAATCTATATAAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTa                          <  2:959038/128‑1 (MQ=255)
                                                                                                               aTTTGGATCAACCAAAACTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATATAAAAAAATGGATTAGTTGATAATCCATTTTTTaa                         >  1:3260606/1‑128 (MQ=255)
                                                                                                               aTTTGGATCAACCAAAACTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTATTTGATAATCCATTTTTTaa                         >  1:5212434/1‑128 (MQ=255)
                                                                                                               aTTTGGATCAACCAAAACTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAAGCCATTTTTTaa                         >  1:877700/1‑128 (MQ=255)
                                                                                                                 ttGGATCAACCAAAACTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAtt                       >  2:6985780/1‑128 (MQ=255)
                                                                                                                  tGGATCAACCAAAACTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAttt                      >  1:6125844/1‑128 (MQ=255)
                                                                                                                    taTCAAAAAAAAATATATCAAAATAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTg                    <  1:5983407/127‑1 (MQ=255)
                                                                                                                     atcaaaaataaCTATATTAAAAAAATTA‑AAAAAAATATTTTATTTGAGTTTAAAATCTTCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGt                   <  1:2910108/119‑1 (MQ=255)
                                                                                                                     aTCAACCAAAACTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGt                   >  1:852693/1‑128 (MQ=255)
                                                                                                                      tCAAACAAAACTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGtt                  <  1:1090880/128‑1 (MQ=255)
                                                                                                                       cAAACAATACTATATAAAAAAAATTA‑AAAATAATATTTTAGTTGAGTTTCAAATCTGCTTATATAGTACAAAGGAATTTATGATAGATAATAATGGATTAGTTGATAATCCATTTTTTAATTTTGttt                 <  1:2471634/128‑1 (MQ=255)
                                                                                                                         aCCAAAACTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTttat               >  2:1276793/1‑128 (MQ=255)
                                                                                                                          ttaaaaCTATATCAAAAAAATTA‑AATAAAATTGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAG‑AAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTttatta             <  1:9939684/126‑1 (MQ=255)
                                                                                                                          ccAAAACTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTATTTTTTTtaatt              >  1:6556523/1‑128 (MQ=255)
                                                                                                                          ccAAAACTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAACGATTTTATTATAGAAAAAAATTGATTAGTTGATAATCCATATTTTAATATTGTttatt              >  2:7714713/1‑128 (MQ=255)
                                                                                                                           cAAAACTATATAAAATAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTttatta             <  2:1128082/128‑1 (MQ=255)
                                                                                                                            ataaatatataAAAAAAATTA‑AATAAATTAGTTTAGTTGAGTTTCAAATCTGCATATATAGTAAAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTaa            <  1:390300/123‑1 (MQ=255)
                                                                                                                            aaaaCTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTaa            >  2:4693429/1‑128 (MQ=255)
                                                                                                                             aaaCTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATTGCTTACTTGAGAATCCATTTTTTAATTTTGTTAATTaaa           >  1:6979233/1‑128 (MQ=255)
                                                                                                                             aaaCTATATAAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTaaa           <  2:899089/128‑1 (MQ=255)
                                                                                                                              aaCTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGTATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAat          >  2:2310368/1‑128 (MQ=255)
                                                                                                                              aaCTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCAATTTTTTAATTTTGTTTATTAAat          >  1:9787691/1‑128 (MQ=255)
                                                                                                                              aaCTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAACGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAat          >  1:456279/1‑128 (MQ=255)
                                                                                                                                  ttatCAAAAAAATTA‑AAAATAATAGTTTAGTTGAGTTTCAAATATGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAattatt      <  1:4804073/127‑1 (MQ=255)
                                                                                                                                  atatCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAattatt      >  2:5239092/1‑128 (MQ=255)
                                                                                                                                  atatCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAattatt      >  2:3183240/1‑128 (MQ=255)
                                                                                                                                  atatCAAAAAAATTA‑AAAAAAAAAGTTTAGTTGAGATTCAAATCTGCATATATAGTACAAAGGAATTTATGAAAGAAAAAAAAGGATTACTAGATAATCAATTATATAATTTTCTTtattatattaat      >  2:2939075/1‑126 (MQ=255)
                                                                                                                                   tatCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAatt         <  2:6534685/124‑1 (MQ=255)
                                                                                                                                    atCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAATTATTaa    >  1:1380293/1‑128 (MQ=255)
                                                                                                                                      cAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAATTATTAAGc  >  1:8175125/1‑128 (MQ=255)
                                                                                                                                      |                                                                                                                                
AAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑T‑TTTTTTTTTTTTTTTGT‑AAAAA‑TAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTA‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAATTATTAAGC  >  CP016816/203824‑204079

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑