Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816420,2530CA43.8% 3143.6 / inf 3645intergenic (‑536/+307)JCVSYN2_01895/JCVSYN2_0190030S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand):  ref base C (602/1359);  new base A (1257/270);  total (1882/1763)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 3755 total aligned reads displayed.

AGAAAACTACTAGCACTTTTTTAAAAAA‑TTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATG‑CTC‑G‑TTTTTTTTTTTTTTTT‑T‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTA  >  CP016816/420126‑420380
                                                                                                                                      |                                                                                                                               
 taaaaaaaatatcACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTTAATTATTTTTCAAATTTTTAAATTATTTTAAAATAATTATATACTAATCAA‑TTTTATG‑CTC‑G‑TTTTTTTTTTTTTTTT‑T‑ACa                                                                                                                                <  2:2278083/116‑1 (MQ=255)
   aaaCTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATG‑CTC‑G‑TTTTTTTTTTTTTTTT‑a‑aaaaa                                                                                                                              >  2:3667593/1‑128 (MQ=255)
   aaaCTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATG‑CTC‑G‑TTTTTTTTTTTTTTTT‑a‑aaaaa                                                                                                                              >  1:3201782/1‑128 (MQ=255)
   aaaCTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATG‑CTC‑G‑TTTTTTTTTTTTTTTT‑T‑Aaaaa                                                                                                                              >  1:10353925/1‑128 (MQ=255)
    aaatattatcaattttttAAAAAA‑TTTTTTATTTTATAAAATTAATTTTTTTTAAATTTTTTAAATTATTTTAAAATAAATATAAATTAATTAA‑TTTTATG‑ATCTT‑TTTTTTTTTTTTTTTT‑T‑ACaaa                                                                                                                              <  2:7660113/116‑1 (MQ=255)
    aaCTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATG‑CTC‑G‑TTTTTTTTTTTTTTTT‑T‑aaaaaa                                                                                                                             >  2:5549267/1‑128 (MQ=255)
     actactAGCACTTTTTTAAAAAA‑TTTTTAATT‑TTATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATG‑CTC‑G‑TTTTTTTTTTTTTTTT‑T‑AAAAAAat                                                                                                                           >  1:8502462/1‑128 (MQ=255)
     aattatattaattttttAAAAAA‑TTTTTAATTTTAATAAATTAATTATTTTTTAAATTTTTAAATTTTTTTAAAATAATTATTAATTAATAAA‑TTTTATT‑CTC‑G‑‑TTTTTTTTTTTTTTT‑T‑ACAAAAat                                                                                                                           <  2:2101250/117‑1 (MQ=255)
          tataatttttttAAAAAATTTTTAATTTTAAATAA‑TTATTTATTTTTAAAATTTTTAAATTATTTTAAAATAATTATAAATTAAAAAA‑TTTTATG‑CTC‑G‑TTTTTTTTTTTTTTTT‑T‑ACAAAAATATaa                                                                                                                       <  2:654513/122‑1 (MQ=255)
          aataaattttttAAAAAA‑TTTTTAATTTTAAAAAATTATTTTTTTTTAAAATTTTTAAATTATTTTTAAATAATTATATATTAATAAA‑TTTTTTG‑CTC‑T‑TTTTTTTTTTTTTTTT‑T‑ACAAAAATATaa                                                                                                                       <  1:8809098/122‑1 (MQ=255)
           aGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATG‑CTC‑T‑TTTTTTTTTTTTTTTT‑A‑AAAAAAATaaaaa                                                                                                                      >  2:4618024/1‑127 (MQ=255)
            gCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATG‑CTC‑G‑TTTTTTTTTTTTTTTT‑T‑ACAAAAAAATAatt                                                                                                                     >  2:311931/1‑128 (MQ=255)
            gCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATG‑CTC‑G‑‑TTTTTTTTTTTTTTT‑T‑AAAAAAATATAattt                                                                                                                    >  2:3896354/1‑128 (MQ=255)
             cACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATG‑CTC‑G‑TTTTTTTTTTTTTTTT‑T‑ACAAAAATATAtttt                                                                                                                    >  2:4245264/1‑128 (MQ=255)
             cACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATG‑CTC‑G‑TTTTTTTTTTTTTTTT‑T‑ACAAAAATATAattt                                                                                                                    >  2:4421543/1‑128 (MQ=255)
             cACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATG‑CTC‑G‑TTTTTTTTTTTTTTTT‑T‑ACAAAAATATAaatt                                                                                                                    >  2:9647110/1‑128 (MQ=255)
              aCTTTTTTAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATATATTAATCAA‑TTTTATG‑CTC‑G‑‑‑‑‑TTTTTTTTTTTT‑T‑ACAAAAATATAATTTATTTg                                                                                                               <  2:3466602/128‑1 (MQ=255)
                 tttttAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATG‑CTC‑G‑TTTTTTTTTTTTTTTT‑T‑ACAAAAATATAatttattt                                                                                                                >  1:3546337/1‑128 (MQ=255)
                   tttAAAAAA‑TTTTTATTTTTAATAAATTAATTATTTTTAAAATTTTTAATTTATTTTCAAATATTTATATATTAATAAA‑TTTTATT‑TTC‑T‑TTTTTTTTTTTTTTTT‑T‑ACAAAAATATAATTTATTTGa                                                                                                              <  2:6142020/128‑1 (MQ=255)
                     tAAAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATG‑CTC‑G‑TTTTTTTTTTTTTTTTAT‑AAAAAAATA‑Aatttatttttat                                                                                                            >  1:8649793/1‑124 (MQ=255)
                      aaaaat‑TTTTTAATTTTAATAAATTAATTATTTTTTAATTTTTTAATTTTTTTTTAAATAATTATATTTTTATAAATTTTTTTT‑TTT‑T‑TTTTTTTTTTTTTTTT‑T‑ACAAAAATATAATTTATTTGAtt                                                                                                            <  2:104074/128‑1 (MQ=255)
                                 taattttaatAAATTAATTATTTTTAAAATTTTTAATTTTTTTTAAAATATTTATATATTTATAAT‑TTTTTTT‑TTT‑T‑TTTTTTTTTTTTTTTT‑T‑ACAAAAATATAATTTATTTGATTAAACGTATAtt                                                                                                 <  2:294567/121‑1 (MQ=255)
                                    ttttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATT‑CTA‑G‑TTTTTTTTTTTTTTTT‑TAAAAAAAATATAATTTATTAGAATAAACGTATATTTa                                                                                               >  2:8081800/5‑128 (MQ=255)
                                     tttaatAAATTAATTTTTTTTAAAATTTTTTAATTTTTTTAAAATAATTATATATTAATAAA‑TTTTATT‑TTCTT‑TTTTTTTTTTTTTTTT‑T‑ACAAAAATATAATTTATTTGATTAAACGTATATTTAt                                                                                              <  2:8484219/125‑1 (MQ=255)
                                      ttattaaattaaTTTTTTTTATATTTTTTAAATTATTTTAAAATAATTATATATTAATAAA‑TTTTATT‑TTT‑GTTTTTTTTTTTTTTTTT‑T‑ACAAAAATATAATTTATTTGATTAAACATAAAtatacg                                                                                             <  1:7826660/118‑3 (MQ=255)
                                      ttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATG‑CTC‑G‑TTTTTTTTTTTTTTTT‑T‑AAATAAATATAATTTATTTAATTAAAAATATATTTAttt                                                                                            >  1:2239977/3‑126 (MQ=255)
                                      ttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATG‑CTC‑G‑TTTTTTTTTTTTTTTT‑T‑AAAAAATAATATTTTATTTTATTAAAATTATATTTATGt                                                                                            >  2:1240557/3‑128 (MQ=255)
                                       taatAACTGAATTATTTTTCAAATTGTTAAATTATTATCAAATAATTATCTATTAATCAA‑TTTTATG‑CTC‑GTTTTTTTTTTTTTTTTT‑T‑ACAAAATTATTTTTTATTTTATTAAAATTATATTTAttt                                                                                            >  1:8085215/2‑126 (MQ=255)
                                       taatAAATTAATTATTTTTTAATTTTTTTAATTATTTTAAAAAAATTTTATATTAATCAA‑TTTTTTT‑CTC‑G‑TTTTTTTTTTTTTTTT‑T‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGtt                                                                                           <  1:9655188/127‑1 (MQ=255)
                                         ataaatttattattTTTAAAATTTTTAAATTATTTTAAAATAATTATTTATTAATAAA‑TTTTATT‑ATT‑G‑TTTTTTTTTTTTTTTT‑T‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTta                                                                                         <  2:2414903/120‑1 (MQ=255)
                                                  ttattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATT‑CTC‑G‑TTTTTTTTTTTTTTTT‑T‑AAAAAAATATAATTTATTTTATTAAACGTATATATATGTTTTATAAAAAtt                                                                                >  2:5401637/1‑127 (MQ=255)
                                                  ttattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATG‑CTC‑G‑‑TTTTTTTTTTTTTTT‑T‑ACAAAAAAATAATTTATTTTATTAAACTTATATTTATTTTTAATAAAAAttg                                                                               >  1:10172247/1‑126 (MQ=255)
                                                    attTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATG‑CTC‑G‑TTTTTTTTTTTTTTTT‑T‑AAAAAAATATAATTTATTTTATTAAAATTATATTTATTTTTAATAAAAAttta                                                                              >  2:5750050/1‑125 (MQ=255)
                                                    attTTTAAATTTTTTAAATTATTTTAAAATCATTATATATTAATAAA‑TTTTATT‑CTT‑G‑‑TTTTTTTTTTTTTTT‑T‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGaa                                                                             <  2:1131416/128‑1 (MQ=255)
                                                     tttttCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATG‑CTC‑G‑TTTTTTTTTTTTTTTT‑A‑ACAAAAATATAATTTAATTAATAAAACTAAAAATAATTTTAAATAAAAAtataa                                                                             >  1:4044065/1‑124 (MQ=255)
                                                        ttaaaaTTTTTTAATTTTTTTAAAATAATTATTTATTAATAAA‑TTTTATT‑TTT‑G‑TTTTTTTTTTTTTTTT‑T‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAaaag                                                                          <  1:4577332/125‑1 (MQ=255)
                                                        ttaaaaTTTTTAAATTATTTTAAAATAAATATATATTAATAAA‑TTTTATT‑TTA‑T‑TTTTTTTTTTTTTTTT‑T‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAaaag                                                                          <  2:9209870/125‑1 (MQ=255)
                                                        ttCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATG‑CTC‑GTTTTTTTTTTTTTTTTT‑T‑ACAAAAATATAATTTATTTAAATAAACATATATTTATTTTTAATAAAAATTGaaaa                                                                           >  2:3269153/1‑128 (MQ=255)
                                                         taataTTTTTAAATTATTTTAAAATCATTATTTATTAATTAA‑TTTTTTT‑TTT‑GTTTTTTTTTTTTTTTTT‑T‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAaaag                                                                          <  1:9497907/124‑1 (MQ=255)
                                                          cAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATG‑CTC‑G‑TTTTTTTTTTTTTTTT‑T‑AAAAAAATATATTTTATTTTATTAAAATTATATTTATTTTTAAAAAAAAttttaaataa                                                                        >  1:9969415/1‑119 (MQ=255)
                                                           aaaTTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATG‑CTC‑G‑TTTTTTTTTTTTTTTT‑T‑AAAAAAATAAAATTTATTTTATTAAAATTATATTTATTTTTAATAAaaataaaaaataaa                                                                       >  2:8234884/1‑128 (MQ=255)
                                                            aaTTGTTATATTATTTTCAAATGATTATCTATTAATAAA‑TTTTATT‑CTA‑G‑TTTTTTTTTTTTTTTT‑T‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAaaagaacg                                                                      <  2:10096209/128‑3 (MQ=255)
                                                            aaTTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATG‑CTC‑G‑TTTTTTTTTTTTTTTT‑T‑ACAAAAATATAATTTATTTTATTAAAAGTTTATTTATGTTTATTAAAAATGTAaaacaaat                                                                      >  2:1870063/1‑127 (MQ=255)
                                                              ttGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATG‑CTC‑GTTTTTTTTTTTTTTTTT‑T‑AAAAAAATATAATTTATTTTATTTAACTTATATTTATTTTAAATAAAAATCTAaaataattt                                                                     >  2:4856511/1‑125 (MQ=255)
                                                              ttGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATG‑CTC‑G‑TTTTTTTTTTTTTTTT‑T‑AAAAAAATATAATTTATTTTATTAAACGTATTTTTATTTTTAATAAAAATTGAaaataatttg                                                                    >  2:2564031/1‑124 (MQ=255)
                                                               ttttAAATTTTTTTAAAATAATTATATATTAATTAA‑TTTTATG‑CTC‑G‑‑TTTTTTTTTTTTTTT‑T‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGaa                                                                  <  2:9070874/126‑1 (MQ=255)
                                                                tttAATTTTTTTTAAAATAATTATATATTAATAAA‑TTTTATT‑TTT‑T‑TTTTTTTTTTTTTTTT‑T‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGaa                                                                  <  1:7927301/127‑1 (MQ=255)
                                                                     attattTTCAAATCATTATCTATTAATCAA‑TTTTATG‑CTC‑GTTTTTTTTTTTTTTTTT‑T‑AAAAAAATATAATTTATTTTATTAAACGTATATTTTTGTTAAATAAAAATGTAAAATAAATTTAAtttt                                                              >  2:9817353/1‑126 (MQ=255)
                                                                       tattTTCAAATCATTATCTATTAATCAA‑TTTTATG‑CTC‑G‑TTTTTTTTTTTTTTTT‑T‑ACAAAAATATAATTTATTTGATTAAACGTATAATTAATTTTAATAAAAATGGAAAAAAAATTGAATTGTAat                                                           >  1:260299/1‑128 (MQ=255)
                                                                         ttttCAAATCATTATCTATTAATCAA‑TTTTATT‑CTC‑T‑TTTTTTTTTTTTTTTT‑T‑AAAAAAATTAAATTTTTTTTATTAAAATTAAATTTATTTTAAAAAAATATTTAAAAAaaattaaattttaaaaa                                                         >  1:74202/1‑121 (MQ=255)
                                                                         ttttCAAATCATTATCTATTAATCAA‑TTTTATG‑CTC‑G‑TTTTTTTTTTTTTTTT‑T‑ACAAAAAAAAAAATTATTTAATTAAACTTATATATATTTTTAAAAAAAATGGAAAAAAAAATAAATTGtaaaaa                                                         >  1:4855882/1‑123 (MQ=255)
                                                                          tttCAAATCATTATCTATTAATCAA‑TTTTATG‑CTC‑G‑TTTTTTTTTTTTTTTT‑T‑AAAAAAATAAAATTAATTTTATTAAACGTATATTTATTTTTAATAAAAATTTAAAATAAATATAATTGAaataat                                                        >  2:5234747/1‑128 (MQ=255)
                                                                             cAAATCATTATCTATTAATCAA‑TTTTATG‑CTC‑G‑TTTTTTTTTTTTTTTT‑T‑ACAAAAATATAATTTATTTTATTAAACTTTTATTTTTTTTTAATAAAAATGAAAAAGAATTTGTATTGTAATaaaaat                                                     >  1:10494958/1‑128 (MQ=255)
                                                                               aaTCATTATCTATTAATCAA‑TTTTATG‑CTC‑G‑‑TTTTTTTTTTTTTTT‑T‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATTTTTAATAAAAATGTAAAAAAAATTAAATTTTAAAAAaaattta                                                  >  1:8369028/1‑128 (MQ=255)
                                                                                  tattattTATTAATCAA‑TTTTATG‑TTC‑T‑TTTTTTTTTTTTTTTT‑T‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAAtaatttaat                                                <  1:5333313/127‑1 (MQ=255)
                                                                                  cATTATCTATTAATCAA‑TTTTATG‑CTC‑G‑TTTTTTTTTTTTTTTT‑T‑AAAAAAATATAATTTATTTTATTAAACTTATATTTATTTTTAATAAAAATGTAAAAAAAATTTAATTTTAATAAtaatttaat                                                >  2:1398934/1‑128 (MQ=255)
                                                                                   attattTATTATTAAA‑TTTTATGATTT‑T‑TTTTTTTTTTTTTTTT‑T‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAAtaatttaat                                                <  2:5956208/128‑1 (MQ=255)
                                                                                    ttATCTATTAATCAA‑TTTTATG‑CTC‑G‑TTTTTTTTTTTTTTTT‑A‑AAAAAAATATAATTTATTTTATTAAAAGTATATTTATTTTTAATAAAAATTAAAAATAATTTGAATTGAAATAATAATttaatta                                              >  2:7212909/1‑128 (MQ=255)
                                                                                          aTTAATCAA‑TTTTATG‑CTC‑GTTTTTTTTTTTTTTTTT‑T‑TAAAAAAAAAAAATTATTTTTATAAAAGTATTTTTTTTTTTAAAAAAAAATGAAAAAAAAATTAATTTTAAAAAAAAATTAAATTAatta                                         >  2:7938228/1‑126 (MQ=255)
                                                                                          aTTAATCAA‑TTTTATG‑CTC‑GTTTTTTTTTTTTTTTTT‑T‑AAAAAAATATAATTTTTTTTATTAAAATTATTTTTATTTTTAATAAAAATTAAAAAAAAATTGAATTTTAAAAATAATTTAATTAAaaat                                         >  2:6370363/1‑128 (MQ=255)
                                                                                          aTTAATCAA‑TTTTATG‑CTC‑G‑TTTTTTTTTTTTTTTT‑A‑AAAAAAATATAATTTATTTAATTAAACGAATATTATTTTTAAAAAAAAATGTAAAAAAAAGTAATTTTAAAAAAAAATTTAATTAAatata                                        >  1:9781457/1‑128 (MQ=255)
                                                                                              aTCAA‑TTTTATG‑CTC‑G‑TTTTTTTTTTTTTTTT‑T‑AAAAAAAAATAATTTATTTGATTAAAATTATATTTTTTTTTATTAAAAATTTAAAATAAATTTAATTTAAATAATAATTAAATTAAATATaaaaa                                    >  2:10240384/1‑127 (MQ=255)
                                                                                                       ttttttttttttttttttttttttttt‑t‑ATTAATATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGt                               <  1:5108600/117‑1 (MQ=255)
                                                                                                       tttttttttgttttttttttttttttt‑t‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGt                               <  1:8250976/117‑1 (MQ=255)
                                                                                                         ttttttttttttttttttttttttt‑t‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTaa                             <  1:1380947/119‑1 (MQ=255)
                                                                                                         tG‑CTC‑G‑TTTTTTTTTTTTTTTT‑T‑AAAAAAATATAATTTATTTTATTAAACGTATATTTATTTTTAATAAAAATGTAAAATAAATTTAATTTAAATAATAATTTAATTAAATATATAAAAATTTAAGtt                          >  2:5073984/1‑128 (MQ=255)
                                                                                                         tG‑CTC‑G‑TTTTTTTTTTTTTTTT‑T‑AAAAAAATAAAATTTATTTTATTAAACGTATATTTATTTTTAATAAAAATGGAAAAGAAATTAAATTTTAATAAAAATTTAATTAAATATAAAAAaatttaattt                          >  1:4296321/1‑128 (MQ=255)
                                                                                                           ttttttttttttttttttttttt‑t‑AAAAAAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGt                           <  1:6473556/121‑1 (MQ=255)
                                                                                                            tttttttttttttttttttttt‑t‑AAAAAAATATAATTTATTTGATTAAAATTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGtt                          <  2:6797071/122‑1 (MQ=255)
                                                                                                            tttgtttttttttttttttttt‑t‑ACAAATATATAATTTATTTGATTTAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGtt                          <  1:6819972/122‑1 (MQ=255)
                                                                                                             ttttttttttttttttttttt‑t‑ATAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGttt                         <  1:7047820/123‑1 (MQ=255)
                                                                                                              ttg‑TTTTTTTTTTTTTTTT‑T‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTa                       <  1:1212373/126‑1 (MQ=255)
                                                                                                               ttttttttttttttttttt‑t‑tATATAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTa                       <  1:2999007/125‑1 (MQ=255)
                                                                                                               ttttttttttttttttttt‑t‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGATAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTa                       <  2:7839210/125‑1 (MQ=255)
                                                                                                               ttttttttttttttttttt‑t‑ACAAAAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTa                       <  2:1656047/125‑1 (MQ=255)
                                                                                                               ttttttttttttttttttt‑t‑AAAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTACTTAAATATATAACAATGTAAGTTTTa                       <  1:3355010/125‑1 (MQ=255)
                                                                                                               ttttttttttttttttttt‑t‑AAAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTa                       <  1:275210/125‑1 (MQ=255)
                                                                                                               gtttttttttttttttttt‑t‑AAAAAAAAATAATTTATTTGTTTAAACGTATTTTTATTTTTTTTAAAAATTGAAAAAAAAATTAATTTTCATAATAATTTAATTAAATAAATAAAAATGAAATTTTTa                       >  2:7007104/4‑128 (MQ=255)
                                                                                                               cctatttattttttttatt‑t‑ACAAAAATAAAAATAATTTGATTACACGAATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAAATAAATATATAACAATGTAAGTTTTa                       <  1:1956951/124‑1 (MQ=255)
                                                                                                                g‑TTTTTTTTTTTTTTTT‑T‑AAAAAAATATAATTTATTTAATAAAAGGTTTTTTTTTTTTAAATAAAAATGAAAAAAAAATTAAATTTAAATAATAATTAAATTAAATATAAAAAAAT‑TAAATTTTaaaa                    >  2:4066381/1‑128 (MQ=255)
                                                                                                                  tttttttttttttttt‑t‑AATAAATTATAATTTTTTTGATTATAATTATTTTTATTTTTAATAAAAATGTAAAATAAATTTAATTGTAATAATAATTTAATTAAATATATAACAATGTTAGTTTTaaaa                    <  1:1697877/128‑1 (MQ=255)
                                                                                                                  gttttttttttttttt‑t‑ACAAAAATATAATTTATTTGATTAAACGTATTTTTATTTTTAATAAAAATGTAAAATAAAGTGAATTGTAATAATAATTTAATTAAATATAAAAAAATATAATTTTTaaaa                    >  2:9514139/2‑128 (MQ=255)
                                                                                                                  gttttttttttttttt‑t‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATTTTTAATAAAAATGTAAAAGAAATTGAATTGTCATAATAATTTAATTAAATATATAAAAATTTAATTTTTaaaa                    >  1:8974573/2‑128 (MQ=255)
                                                                                                                  cgtttttttttttttt‑t‑AAAAAAATATAATTTATTTGATTAAACGTATATTTATTTTTAATTAAAATGGAAAATAAATTGATTTTTAATAATAATTTAATTAAATATATAAAAATGTAAGTTTTaaaa                    >  1:9139497/3‑128 (MQ=255)
                                                                                                                   ttttttttttttttt‑t‑ACAAATATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAac                   <  2:8952490/128‑1 (MQ=255)
                                                                                                                   ttttttttttttttt‑t‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAac                   <  1:9254974/128‑1 (MQ=255)
                                                                                                                   ttttttttttttttt‑t‑AAAAAAATATAATTTTTTTGATTAAACGTATTTTTATGTTTAATAAAAATGGAAAATAAAGTGATTTGTCATATTAATTTAATTAAATTTATAAAAATGTAAGTTTTaaaaa                   >  1:5910473/1‑127 (MQ=255)
                                                                                                                   ttttttttttttttt‑t‑AAAAAAATATAATTTATTTTATTAAACGTATATTTTTTTTTAATAAAAATTGAAAAGAAATTTAATTTTAATAATAATTTAATTAAATATATAAAATTTTAATTTTTaaaaa                   >  2:836760/1‑127 (MQ=255)
                                                                                                                     ttttttttttttt‑t‑AAAAAAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAactt                 <  1:5704738/128‑1 (MQ=255)
                                                                                                                      tttttttttttt‑t‑AAAAAAATATAATTTATTTTATTAAACGTATATTTATGTTTAATAAAAATTGAAAAAAAATTTAATTTTAATAATAATTTAATTAAATATATAAAAATTTAAGTTTTAAAactta                >  2:8805603/1‑128 (MQ=255)
                                                                                                                       ttttttttttt‑t‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATTTTTAATAAAAATGGAAAATAAATTTAATTGTAATAATAATTTAATTAAATATTTAACAATTTAATTTTTAAAaattaa               >  2:8638723/1‑127 (MQ=255)
                                                                                                                          tttttttt‑t‑ATAAAAATATAATTTATTTGATTATACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACttt            <  1:616066/128‑1 (MQ=255)
                                                                                                                           ttttttt‑t‑ATAAAAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACtttt           <  2:2749233/128‑1 (MQ=255)
                                                                                                                           ttttttt‑t‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACtttt           <  1:938141/128‑1 (MQ=255)
                                                                                                                            tttttt‑t‑ACAAAAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGTAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACttttt          <  1:3752138/128‑1 (MQ=255)
                                                                                                                             ttttt‑t‑AAAAAAATATAATTTATTTGATTAAACGTATATTTATTTTTAATAAAAATTGAAAAAAAAGTTAATTTACATAATAATTTAATTAAATATAAAAAAATTTAAGTTTTAAAAATTACtttttt         >  1:10008824/1‑128 (MQ=255)
                                                                                                                              tttt‑t‑AAAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTg        <  1:2469759/128‑1 (MQ=255)
                                                                                                                                tt‑t‑ACAAAAATATATTTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGtt      <  2:9311524/128‑1 (MQ=255)
                                                                                                                                tt‑t‑AAAAAATTATAATTTATTTGTTTAAACTTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTAATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGtt      <  1:5515670/128‑1 (MQ=255)
                                                                                                                                 t‑t‑ACAAAAATATAATTTTTTTGATTTAAGGTATTTTTTTTTTTATTAAATATGGAAAATAATGTTAATTTTAATAATAATTTAATTAAATATATAACAATTTAAGTTTTAAAACTTAAtttttttttt     >  2:741939/1‑128 (MQ=255)
                                                                                                                                      |                                                                                                                               
AGAAAACTACTAGCACTTTTTTAAAAAA‑TTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATG‑CTC‑G‑TTTTTTTTTTTTTTTT‑T‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTA  >  CP016816/420126‑420380

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑