Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816165,2520T.60.1% 106.9 / inf 345intergenic (+216/‑326)JCVSYN2_00665/JCVSYN2_00670tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser
Reads supporting (aligned to +/- strand):  ref base T (53/74);  new base . (148/43);  total (201/144)
Fisher's exact test for biased strand distribution p-value = 1.63e-10
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 454 total aligned reads displayed.

AATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACT  >  CP016816/165125‑165378
                                                                                                                                 |                                                                                                                               
      tattttCAATAATTTATAGCACTTGTATTAATTAGTAATAAAATAAAAATATTATCTTTTTATATAATTTTTTTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttttttt                                                                                                                           <  2:2382626/125‑1 (MQ=255)
      tAGGTTCATTAATTTATCGCACTTGTATTTATTACTAATAAAATAATAATTATATATTTTTTTATATTTTTTTTAAATTCAAATTTTTAAAAAATTAATTTGCACTTGTAAAAAATACCttttttttt                                                                                                                           <  1:1001110/128‑1 (MQ=255)
        tttaaaTTAATTTTTCTCAATTTTATTAATTATTAACAAAAAAAAAATATTATATTTTTATATATTTTTTTTATATGAAAATTTTTAAAAAATTAATTTTAACTTGTAAAAAATAGCttttttttttt                                                                                                                         <  1:873459/123‑1 (MQ=255)
             ttttaattATTGCACTTTTATGTATTAGTAATAATATAAAACTATTATGTTTTTATATATTTTTTGTATATTCAAATTTTTAAAAAATTAAATTTAACTTGTAAAAAATAGCttttttttttttttta                                                                                                                    <  2:1365683/122‑2 (MQ=255)
             aTTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtttttttttttttttt                                                                                                                    >  2:981985/1‑128 (MQ=255)
              tttaTTTATCGCACTTGTATGAATTAGTAACTAAATAAAACTATTATCTTTTTAGATATTTTTTTTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGGgttttttttttttttta                                                                                                                   <  2:3186953/125‑2 (MQ=255)
               tAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtttttttttttttttttt                                                                                                                  >  2:2614787/1‑128 (MQ=255)
               tAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttttttttttttttta                                                                                                                  >  1:650788/1‑127 (MQ=255)
                  tttATCTCAATTTTATTAATTATTAATAAAATAAAACTATTATCTTTTTATAAATTTTTTGTATATTCAAATTTTTAAAAAATTAATTTTAACTTGTAAAAAATAGCtttttttttttttttataatg                                                                                                               <  2:2246823/128‑7 (MQ=255)
                  tttATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttttttttttttttataat                                                                                                               >  2:2109351/1‑123 (MQ=255)
                  tttATAGAACTTTTATGAATTATTAATAAATTAAAACTATTATTTTTTTATTTATTTTTTTTATATTCAAATTTTTAAAAAATTAATTTTAAATTGTTAAAAATACCtttttttttttttttataatg                                                                                                               <  1:1411016/128‑7 (MQ=255)
                   tttaagCACTTTTTTTAATTATTAAGAAAATAAAAATATTTTGTTTTTTTATATTTTTTTTATATTCAAATTTTTAAAAAATTAAATTTAACTTTTAAAAAATAGCtttttttttttttttataatgg                                                                                                              <  1:1829843/123‑8 (MQ=255)
                   ttATTGCACTTGTATTAATTAGTAATTAACTAAAAATTTATCTTTTTTTTTATTTTTTGTATATTCAAATTTTTAAAAAATTAATTTTTACTTTTAAAAAATAGCtttttttttttttttataatgga                                                                                                             <  1:70276/128‑9 (MQ=255)
                    tataGCAATTGTTTGTATTATTAATAAAATATAAAAATTATATTTTTATATATTTTTTTTATATTCAAATTTTTAAAAAATTTATTTTTACTTTTTAAAAATAGCttttttttttttttttataatgg                                                                                                             <  1:1745169/128‑8 (MQ=255)
                     aTCGCCCTTGTATGAATTAGTAATAAAAAAAAAATATTATATTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAAATAATTTTAAATTTTAAAAAATATCttttttttttttttttataatgga                                                                                                            <  1:1696364/128‑9 (MQ=255)
                     aTCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTCTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtttttttttttttttttattgtat                                                                                                            >  1:635765/1‑121 (MQ=255)
                       cGCACTTGTATGAATTAGTAAGAAACTAAAAATATTATATTTTTAGATATTTTTTTTATATCCAAATTTTAAAAAAATTAATTTGAAATTTTAAAAAATAGAttattttattatttaataatttaata                                                                                                          >  2:559890/1‑116 (MQ=255)
                            ttGTATTAATTAGTAATTAAATTAAAATTTTATATTTTTATTTATTTTTTTTTTATGAAATTTTTTAAAAAATTTATTTTATATTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGGAAATATaaa                                                                                                 <  1:1783996/128‑1 (MQ=255)
                             tttattaattattaatAAACTAAATATATTATCTTTTTTTATATTTTTTTTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTATAATGGAAATATaaa                                                                                                 <  1:835946/126‑1 (MQ=255)
                             tgttttaaTTAGTTAGAAAATAAAAATATTTTCTTTTTATTTTTTTTTTGTATTTGTAAATTTTTAAAAAATTAATTTGTACTTGTATAAAA‑‑‑‑‑TTGGTTTTTTTTTTTTTTATAATGGAAATATAAAtt                                                                                               <  2:1305089/122‑1 (MQ=255)
                             tGTTTGAATTTTTAATTAAATAAAACTATTATATTTTTATTTATTTTTTGTATATGAAAATTTTTAAAAAATTAATTTGAACTTTTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATaaa                                                                                                 <  1:578191/128‑1 (MQ=255)
                              tttttaaTTATTAATTAAATAAAACTTTTTACTTTTTATTTATTTTTTTTATATTCAAATTTTTAAAAAATTAATTTTAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGGAAATATAAAtt                                                                                               <  1:785937/123‑1 (MQ=255)
                              tttttaaTTATTAATAAAATAAAAATTTTATATTTTTATATATTTTTTTTATATTCAAATTTTTAAAAAATTAATTTTAAATTTTAAAAAAAA‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATaaa                                                                                                 <  1:116541/123‑1 (MQ=255)
                              ttATGAATAAGATAGTAAATAAAACTATATACTTTTTTTATAATTTTTTTAAATGCAAAATTTTAAAAAATTTATTTTAACTTGTAAAAAATA‑‑‑‑TCTTTTTTTTTTTTTTTATAATGGAAATATAAAtt                                                                                               <  2:1676936/127‑1 (MQ=255)
                              gtttttattattAATAAAATAAAAATATTATTTTTTTAGATTTTTTTTTTATATTTAAATTTTTAAAAAATTTATTTTTACTTGTTAAAAATA‑‑‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAAtt                                                                                               <  1:2527050/122‑1 (MQ=255)
                               tttttattattAATTAAATAAAACTTTTATATTTTTATTTTTTTTTTTTATATTCAAATTTTTAAAAAAATAATTTTAAATTTTTAAAAAT‑‑‑TTCTTTTTTTTTTTTTTTTATAATGGAAATATAAAtt                                                                                               <  1:3183336/123‑1 (MQ=255)
                                 ttaatttttAAGAAAAAAAAAATTTTTTTTTTTTATATTTTTTTTGTATTTTCAAATTTTTAAAAAATTAATTTGAAATTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGGAAATATAAATTTTa                                                                                            <  1:2105554/120‑1 (MQ=255)
                                 tGAATTATTAATAAACAAAAAATATTATATTTTTATATATTTTTTTTATATGCAAATTTTTAAAAAATTAATTTTAACTTGTAAAAAAAAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAAtttt                                                                                             <  1:2974994/128‑1 (MQ=255)
                                 agtaTTAGTAATAAACTACAACTTAAATATTTTTAGATAATTTTTGTATTTTAAAAATTTTAAAAAATTAAAATTAACTTTGAAAAAATA‑‑‑‑TCCTTTTTTTTTTTTTTATAATGGAAATATAAATTTTa                                                                                            <  2:827626/125‑1 (MQ=255)
                                    attattAATAAACTAAAACATTTATCTTTTTTTATATTTTTTGTATATTCAAATTTTTAAAAAAATAATTTTAACTTGTTAAAAATA‑‑‑‑TCTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGt                                                                                         <  1:419775/128‑1 (MQ=255)
                                     ttACTAATAAATAAAAACTATTATTTTTTTAGATATTTTTTGTATATGTATTTTTTTAAAAATTTAATTTTAAATTTTAAAAA‑‑‑‑‑TTATCCTTTTTTTTTTTTTATAATGGTAATATAAATTTTAGGTAt                                                                                       <  2:773405/128‑1 (MQ=255)
                                      tAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGATAATTAAAtttttgtt                                                                                         >  1:2120916/1‑124 (MQ=255)
                                         tAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATTTAAATAAAAATTTTatttttt                                                                                      >  1:2543549/1‑122 (MQ=255)
                                           tgAAACATAAACTTTTATATTTTTAGTATTTTTTTTTATTTTGAAATTTTTAAATAATTAATTTTTAATTGTTAAAAAT‑‑‑TTGTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTttg                                                                                   <  1:1225313/127‑1 (MQ=255)
                                           ataaaataaaattaTTTTTTTTTTTTATATTTTTTTTATATTAAAATTTTTAAAAAATTAATTTTAAATTTTAAAAAATA‑‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTttg                                                                                   <  1:953944/126‑1 (MQ=255)
                                           ataaaaaaaaaataTTTTATTTTTATATATTTTTTTAAATTTAAATTTTTTATAAAAATTATTTTAAATTGTAAAAAATA‑‑‑ATTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTttg                                                                                   <  1:895724/121‑1 (MQ=255)
                                                  taaacatatttttttttATTTATTTTTTTTTTATTTAAATTTTTAAAAAAATAAATTTTAATTTTAAAAAATAG‑‑‑GTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTCGTTGTCTa                                                                           <  1:1347285/116‑1 (MQ=255)
                                                    aaaattttattttttATATTATTTTTTTTATATTCAAATTTTTTAAAAATTAATTTTTAATTTTAAAAAATTGC‑‑‑‑TTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAg                                                                         <  1:527494/118‑1 (MQ=255)
                                                     aatattttatttTTATATTTTTTTTTGTTATGCAAATTTTTTAAAAATTAATTTTAAATTTTAAAATATA‑‑‑‑TCTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTa                                                                       <  1:1617777/126‑1 (MQ=255)
                                                      ctaTTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTAAAATTTAAATATAAATTTTAGTTATttttttttatattt                                                                         >  2:187016/1‑120 (MQ=255)
                                                       tattatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATTTAAATAAAAATTTTAGTTATTTTTTTTTATAATTa                                                                       >  2:1740386/1‑128 (MQ=255)
                                                       tattatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑‑TTTTTTTTTTTTTTATAATGGAAATATAAATTTTATGTTTTTTTTTTTATAATTaaat                                                                    >  1:285960/1‑125 (MQ=255)
                                                       tattatATTTTTATATATTTTTTTTTTTTTAAAATTTTTAAAAAATTAAATTTAAAATTTAAAAAATA‑‑‑‑TCTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATc                                                                     <  2:2190739/128‑1 (MQ=255)
                                                         ttatCTTTTTGGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑‑‑‑‑TCTTTTTTTTTTTTTAATAATTGAAATTTAAATTTTAGGTATTTTGTTTTATAATTTTCTaa                                                                  >  2:694240/1‑128 (MQ=255)
                                                              tttttATATATTTTTTTTTTATTAAAATTTTTAAAAAATTAATTTTAAATTTTTAAAAATA‑‑‑‑‑TCTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTaaaaaaa                                                             <  1:3096888/128‑1 (MQ=255)
                                                               ttttATAAATTTTTGTTATTGAAAATTTTTAAAAAATAAAATTGAAATTTTAAAAATAAGC‑‑‑‑‑TTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATa                                                           <  2:2930538/128‑1 (MQ=255)
                                                                tttAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTAGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTAATAATTGAAATATAAATTTTAGATAATTTGTTGTATAAATATATaaaaataa                                                            >  1:1443285/1‑125 (MQ=255)
                                                                 tttattttttatttGTATATTCAAAATTATATAAATTTATTTTTCTCTTGTAAAAAATTAC‑‑‑TTTTTTTTTTTTTTTTATAATGGAATTATAAATTTTAGTTATTTTGTTGTCTAAGTATCTaaaaaaa                                                             <  1:2376972/117‑1 (MQ=255)
                                                                 ttAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTT‑‑‑‑‑TAATGTAAATAAAAAATTTATTTATTTTTTTTTATAATTATATAAAAAAATat                                                          >  1:1725977/1‑127 (MQ=255)
                                                                  tAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATTTAAATAAAAATTTTATTTATTTTTTTTTATAATTTTATAAAAAAATat                                                          >  2:1141539/1‑127 (MQ=255)
                                                                   tagtaatTTTTTTTATATTGAAATTTTTAAAAAATTAATTTTAAATTGTTAAAAATA‑‑‑TATTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATa                                                           <  2:1521848/123‑1 (MQ=255)
                                                                    gATATTTTTTGTTTTTTCAAATTTTTTAAAAATTAATTTGTAATTTTAAAAAAA‑‑TTCTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGa                                                         <  1:2611392/128‑1 (MQ=255)
                                                                    gATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTATGTATTTTTTTTTATAATTATATaaaaaaaaata                                                         >  2:2773409/1‑124 (MQ=255)
                                                                      ttatTTTTTTTATATTTAAATTTTTAAAAAATTAATTTTTAATTTTTAAAAATA‑‑‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAg                                                      <  2:412444/127‑1 (MQ=255)
                                                                        tttttttttttATTAAAATTTTTAAAAAATTAATTTTTATTTTTAAAAAAA‑‑‑TTTTTTTTTTTTTTTTTTATAATTTAAATATAATTTTTTGTTTTTTTTTTGTTTAATTATATAAAAAATTATaatga                                                     <  1:163382/127‑4 (MQ=255)
                                                                        atTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑‑TTTTTTTTTTTTTTATAATTAAAATATAAATTTAAGTAATTTTTTTTTATAATTATATAAAAAAATATaaataa                                                    >  2:2038549/1‑125 (MQ=255)
                                                                           ttttttttATGTAAATTTTTAAAAAATTTTTTTTAAATTTTAAAAAATA‑‑‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAGTTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaa                                                  <  1:1537178/128‑1 (MQ=255)
                                                                           ttttGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTAGGTATTTTTTTTTATAATTATATAAAAAAATATaaatta                                                    >  2:1995777/1‑125 (MQ=255)
                                                                           ttttGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTAAAATGTAAATATAAATTTTATTTATTTTTTTTTATAATTTTATAAAAAAAAATAAAGaaaa                                                  >  1:2225253/1‑128 (MQ=255)
                                                                            tttttttatTCAAATTTTTTAAAAATTAATTTTTAATTTTAAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaa                                                  <  1:2826815/122‑1 (MQ=255)
                                                                            tttGTATTTTAAAATTTTTAAAAAATTAATTTTTAATTTTAAAAAAT‑‑‑TTCTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaa                                                  <  2:162308/128‑1 (MQ=255)
                                                                             ttGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGTTTTTTTTTTGTCTAATTTAAAAAAAAAATAAAAAGGaaaa                                                 >  1:2683794/1‑128 (MQ=255)
                                                                              tGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTT‑‑‑‑‑‑TAATGTAAATAAAAATTTTAGTTTTTTTTTTTAAAAATAAACTAAAAAAATAAAAAGAaaaaaaaa                                             >  1:1588983/1‑126 (MQ=255)
                                                                              tGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGTAAATAAAATTTTTATTTATTTTTTTTTAAAATTATATAAAAAAATAAAATATaaaaaa                                               >  2:2339608/1‑128 (MQ=255)
                                                                               gTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTT‑‑‑TAATGTAAATATAAATTTTAGGTATTTTGTTGATAAATTATTAAAAAAAATTAAAAGTaaaaaa                                               >  1:3211547/1‑128 (MQ=255)
                                                                                tataTGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑‑TTTTTTTTTTTTTTAAAATTTAATTATAAATTTTAGTTATTTTTTTTTAAAATTATATAAAAAAATAAAAATAAAAAAatat                                            >  2:1916273/1‑128 (MQ=255)
                                                                                   atGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑‑TTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGTTTTTTTTTTGTATAATTATATAAAAAAATATAAAGGAAAAAAtttttt                                         >  1:276101/1‑126 (MQ=255)
                                                                                    tGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTT‑‑‑‑TAATGGAATTATAAATTTTATTTATTTTTTTTTATAATTTTCTAAAAAAATAAAAAGTAAAAAATAtttt                                         >  1:2155526/1‑126 (MQ=255)
                                                                                    tGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGTAAATATAAATTTTATGTATTTTTTTTTCTAATTTAATAAAAAAATATAAATAaaaaaaattttt                                         >  2:644359/1‑122 (MQ=255)
                                                                                    tGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTAAAATTTAAAATAAAATTTTAAGTATTTTGTTGAAAAATTATATAAAAAAATAAATAGAAAAAAattattta                                        >  1:2180273/1‑122 (MQ=255)
                                                                                    tGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑‑TTTTTTTTTTTTTTAAAATGTAAATTTAAATTTTAGTTTTTTTTTTGAATAATTATATAAAAAATTATAAAGTAAAAAATATtttt                                        >  2:1813214/1‑128 (MQ=255)
                                                                                     gCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGTAAATATAAATTTTATATATTTTTTTTAATAAGTTAATAAAAAAATAAAAAATAAAAAATATtttt                                        >  2:1196768/1‑128 (MQ=255)
                                                                                       aaaTTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTT‑‑‑‑TAATGGTAATTTTAATTTTTTGTATTTTGTTGTATAATTTTTTAAAAAAATATAAATGAAAAAAAATTGTTaa                                      >  2:287793/1‑128 (MQ=255)
                                                                                       aaaTTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGGAAATATAAATTTAAGTTATTTTGTTTTATAATTATCAAAAAAAAAATAATGTAAAAAAAATTATTaa                                      >  1:1186826/1‑128 (MQ=255)
                                                                                       aaaTTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTAAAATTGAAATATAAATTTTAGGAATTTTTTTGTAAAATTATAAAAAAAAAAATAAAGGAAAAATAATTGTTaa                                      >  1:1958461/1‑128 (MQ=255)
                                                                                              ttaaaaaaTTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGGAAATATAAATTTTTGGTATTTTGTTGTATATTTTTATAAAAAAATAAAAAGTTAAAAATATTGTTTAAATTat                                >  2:246551/3‑127 (MQ=255)
                                                                                               taaaaaaTTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGTAAATTTAAATTTTATTTATTTTTTTTTATAATTATATAAAAAAATTAAAAGTAAAAAATATTTTTAAAATTaa                                >  2:1248356/2‑128 (MQ=255)
                                                                                                   aaattaattTGAACTTGTAAAAAATAGC‑‑‑‑‑TTTTTTTTTTTTTTATAATGGAATTATAAATTTTATGTTTTTTTTTGTATATTTATGTAAAAAAATATAAATGAAAAAAAAATGTTAAAAGTataaatta                          >  1:2355838/2‑121 (MQ=255)
                                                                                                    aattaattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTAT‑‑TAATGTAAAATAATTTTTAATTATTTTATTTTTTAATTTATTTAAAAAATAAAATAAAAAAATAATATTaataattataaaaa                          >  1:1390802/1‑116 (MQ=255)
                                                                                                    aattaattTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTAATAATGTAAATAAAAATTTAAGTTATTTTGTTTTATAATTATAAAAAAAATAAAAAAGTAAAAAATATTTTTAAAATAAataata                           >  2:1555296/1‑128 (MQ=255)
                                                                                                     attaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTTTTGTATAAGTATATAAAAAAATATAAATGAAAAAATATTGTTAAAATTAATACTa                           >  2:1069838/1‑128 (MQ=255)
                                                                                                     attaattTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATTAAAATATAAATTTTATGTATTTTTTTTAATAAGTAAATAAAAAAATAGAAAGGAAAAAATATTTTTaaaataaaaaataaa                         >  1:728464/1‑117 (MQ=255)
                                                                                                     attaattTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGTAAATTAAAATTTAAGTTATTTTTTTGACAATATAACTAAAAAAAAAAAAAGTAAAAAATATTATaaaatatataaataaa                         >  1:2039925/1‑116 (MQ=255)
                                                                                                     attaattTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGTAAATAAAAATTTTATTATTTTTGTTGTATAATTATATAAAAAAATAAAAAGTAAAAAAAATTTTTAAaataaataaaaaa                         >  1:2900794/1‑123 (MQ=255)
                                                                                                     attaattTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGGAATAATAAATTTTTGTTATTTTGTTTTATAATTATATAAAAAAAAATAAAGGAAAAAATATTTTTTAAATTAATaattaa                         >  1:2251867/1‑123 (MQ=255)
                                                                                                      ttaattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTT‑‑‑TAATGGAAATATAAATTTTAGTTATTTTTTTTAATATTTTTATAAAAAAATTTAATGGAAAAAATATTTTTAAATTTATTACTaaa                         >  2:455268/1‑128 (MQ=255)
                                                                                                      ttaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTAAATGGAAATTTAATTTTAAGGTATTTTTTTTAATATGTATATAAAAAAATTTAATGGAAAAAATTTTTTTAAAAGTAATATTaaa                         >  2:886141/1‑128 (MQ=255)
                                                                                                      ttaattTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTAAATTAAAAAAAAAATTTTTGGTTTTTTTTGTAATAAGAAAATAAAAAAAATAAATCAAAAAAAATTTGTAAAAGTTATACTAAAat                       >  1:2007166/1‑128 (MQ=255)
                                                                                                      ttaattTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGGAAATTTAAATTTTATGTATTTTTTTGTATAAATATATAAAAAAAAAAAAATGAAAAAATATTTTTAAAATTAAAAATaaaa                        >  1:3021243/1‑128 (MQ=255)
                                                                                                                   aatttttaaaaatttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAAt               <  1:490397/116‑1 (MQ=255)
                                                                                                                    tttttaaaaattttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATTGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATg              <  1:1248356/117‑1 (MQ=255)
                                                                                                                    aattttaaaaaatttgttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATg              <  1:1065882/116‑1 (MQ=255)
                                                                                                                         aaatatattttttttttttttttttATAATGGAAATATAAATTTTATGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaat         <  2:1429834/121‑1 (MQ=255)
                                                                                                                         aaaaaatttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaat         <  2:3057595/122‑1 (MQ=255)
                                                                                                                          aaaaatttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatt        <  1:2469979/123‑1 (MQ=255)
                                                                                                                           aatttatttttttttttttttttATTATTGAAATATATATTTTAGGTATTTTGTTGTATAAGTTTCTAAAAAAATAGAAAGGAAATAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatta       <  1:2261941/122‑1 (MQ=255)
                                                                                                                           aaaatttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTATAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatta       <  1:1906048/124‑1 (MQ=255)
                                                                                                                            atagctttttttttttttttttAATTGTAAATTAAAATTTTAGGTTTTTTTTTTTATAATAAAATAAAAAAAAATAATGTAAAAAATTTTTTTAAATTTAATAATAAATTATTTTAATTTTATTTaaa     >  2:169968/6‑128 (MQ=255)
                                                                                                                             tttttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTaaa     <  2:2819309/126‑1 (MQ=255)
                                                                                                                              ttttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTaaaa    <  2:3023300/127‑1 (MQ=255)
                                                                                                                                 |                                                                                                                               
AATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACT  >  CP016816/165125‑165378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: