Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4770CA48.9% 240.9 / 189.8 406intergenic (+255/‑420)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base C (118/86);  new base A (54/141);  total (172/234)
Fisher's exact test for biased strand distribution p-value = 1.09e-09
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 461 total aligned reads displayed.

AAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATAT  >  CP016816/202349‑202603
                                                                                                                                   |                                                                                                                               
aaattaGTGAAGTTAGTGTAAATAATATAGATAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAAAGTATATCCACCTGATCTA‑TTTTTTATTTGATT‑ATCTTCAC‑AAAT‑AAAAAAAAAAc                                                                                                                                 <  2:1909527/128‑1 (MQ=255)
 aagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCAC‑AAAT‑AAAAAAAAAAc                                                                                                                                 <  1:2548188/128‑1 (MQ=255)
 aagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCAC‑AAAT‑AAAAAAAAAAc                                                                                                                                 <  2:168955/128‑1 (MQ=255)
 aagtaGAGAAGTTATTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCAC‑AAAT‑AAAAAAAAAAc                                                                                                                                 <  2:1386629/128‑1 (MQ=255)
  agtagtTAATTTATTGTAAATAATATATTTAATGTTAATTAAAATAAAATAAACTTAATAATTCTAATAATGTAGATCCACGTGATCTATTTTTTTATTTGATT‑ATCTTCAC‑AAAT‑AAAAAAAAAACa                                                                                                                                <  2:247125/128‑1 (MQ=255)
  agtagtGAAGTTAGTGTAAATAATAGAGTTAATGTTAATTAAAATACCATAAACTTAATAATTCATATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTT‑ATCTTAAC‑AAAT‑AAAAAAAAAAcc                                                                                                                                >  1:2426658/1‑127 (MQ=255)
  agtagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACATAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCAC‑AAAT‑AAAAAAAAAACa                                                                                                                                <  2:357323/128‑1 (MQ=255)
   gtagtTAAGTTATTGTAAATAATAGTGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTAGTGATCTATTTTTTTATTTGTTT‑ATCTTCAC‑AAAT‑AAAAAAAAAACaa                                                                                                                               <  1:1941178/128‑1 (MQ=255)
   gtagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATAAAATAAACTTAATAAATCTTATAATTTAAATAATAAAAATCTATTAAATAATAATAAT‑ATCTACAC‑AAAT‑Aaaaaaaaaaaaa                                                                                                                               >  1:1968672/1‑128 (MQ=255)
     agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATAGCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCAC‑AAAT‑AAAAAAAAAACAATc                                                                                                                             <  2:1454417/128‑1 (MQ=255)
     agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTAAAATACTCAAAATCTATATTAATAAATAATA‑ATCTAAAC‑AAAT‑Aaaaaaaaaaaaaaa                                                                                                                             >  1:537036/1‑126 (MQ=255)
     agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTA‑ATCTTCAC‑AAAT‑AAAAAAAAAACAATc                                                                                                                             >  2:798617/1‑128 (MQ=255)
     agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCAC‑AAAT‑AAAAAAAAAACaaac                                                                                                                             >  1:2477202/1‑126 (MQ=255)
     agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTATAATAATGTAGATCATATAAATATAATTTTTTATTTATTT‑ATATTCAC‑AAAT‑Aaaaaaaaaaaaaaa                                                                                                                             >  1:2267532/1‑126 (MQ=255)
      gttaagtatttgtAAATAATAGATTTAATGTAAAATAAAATAAAATAAAATTAATAATTATTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCAC‑AAAT‑AAAAAAAAAACAATcc                                                                                                                            <  2:2080678/118‑1 (MQ=255)
      gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCAC‑AAAT‑AAAAAAAAAACAATcc                                                                                                                            <  2:1479397/128‑1 (MQ=255)
      gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTAATCTATTTTTTTATTTGTTT‑ATCTTCAC‑AAATAAAAAAAAAAACAATc                                                                                                                             >  1:2927366/1‑128 (MQ=255)
       tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCAC‑AAAT‑AAAAAAAAAAAAATccc                                                                                                                           >  1:386337/1‑128 (MQ=255)
          aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCAC‑AAAT‑AAAAAAAAAAAAATACCAtt                                                                                                                        >  1:3130468/1‑128 (MQ=255)
          aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACAATAAACTTAATAATTCTTATAATATATATCATAGTGATCTATTTTATAATTAATTA‑ATATAAAA‑AAAT‑Aaaaaaaaaaaaaacaaaaa                                                                                                                        >  1:1848439/1‑121 (MQ=255)
          aGTTAGAGTAAATAATAGAGTTAAGGTTAATTAAAATAACATAAACTTAATAATTCTTATAATGTAAATAATCTTGATCTATTTATTTATAATATA‑AAATTAAC‑AAAT‑AAAAAAAAAAAAAtaaaaaa                                                                                                                        >  1:2678/1‑122 (MQ=255)
           tttattttatataataGATTTATGTTTAATTATAATAAAATAAATTTAATATTTCTTATAATTTATATACTGGTGATTTATTTTTTTATTTGTTT‑ATGTTGAA‑ATTT‑AAAAAAAAAACAATCCCCtta                                                                                                                       <  1:2357790/118‑2 (MQ=255)
           gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTATTTTTTTATTTGTTT‑ATCTTCAC‑AAAT‑AAAAAAAAAAAAATcacatta                                                                                                                       >  1:1081783/1‑122 (MQ=255)
           gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCCtta                                                                                                                       <  2:2492011/128‑2 (MQ=255)
           gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCAA‑AAAT‑AAAAAAAAAAAAATACACtta                                                                                                                       >  2:2778103/1‑127 (MQ=255)
            ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTCATCTATATTTTTATTTTTTT‑ATCTTCAC‑AAAT‑AAAAAAAAAAAAAtaacattaa                                                                                                                      >  1:744320/1‑120 (MQ=255)
             tAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTATTATTTTTTT‑AAATTCAC‑AAAT‑Aaaaaaaaaaaaaaaaaataaaa                                                                                                                     >  1:1534009/1‑118 (MQ=255)
                tgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCAC‑AAAT‑AAAAAAAAAACAATACACttaaaaat                                                                                                                  >  1:1119358/1‑122 (MQ=255)
                    aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCAC‑AAAT‑AAAAAAAAAACAAACCCAttaaaaataaaa                                                                                                              >  1:2838841/1‑118 (MQ=255)
                         tttattttattttaaataaAAAAACATAAACTTTATAATTTTTTAAATTTATATTCTTGTTTTATTTTTTTTTTTTTGTTT‑TTTTTAAA‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaa                                                                                                      <  1:1645505/117‑1 (MQ=255)
                         taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCACGTTATCTATTATTTTATTTATTT‑AACTTCAC‑AAAT‑AAAAAAAAAAAAAAACCC‑AAAAAA‑AAATaaaaaaa                                                                                                       >  1:1803456/1‑128 (MQ=255)
                          agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCAC‑AAAT‑AAAAAAAAAACAAAAACATT‑‑‑AA‑AAATaaaaaaaaaa                                                                                                    >  1:663106/1‑128 (MQ=255)
                             gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTAATTTGTTT‑ATCTTCAC‑AAAT‑AAAAAAAAAACAATACC‑‑‑ATAAA‑AAATaaaaaaaaaaaaa                                                                                                 >  2:2645386/1‑128 (MQ=255)
                               tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCAC‑AAAT‑AAAAAAAAAACAATCCAC‑‑TTAAA‑AAATaaaaaaaaaaaaaa                                                                                                >  1:2521932/1‑128 (MQ=255)
                                aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTtaaaaaaaaaaaaaa                                                                                               >  1:2615315/1‑128 (MQ=255)
                                aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaa                                                                                               >  1:3041010/1‑128 (MQ=255)
                                aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCAC‑AAAT‑AAAAAAAAAACAAAACCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaa                                                                                               >  2:2410997/1‑128 (MQ=255)
                                aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCAC‑AAAT‑AAAAAAAAAAAAAACACC‑‑‑TAAA‑AAATaaaaaaaaaaaaaaaa                                                                                              >  1:2045293/1‑128 (MQ=255)
                                aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCAC‑AAAT‑AAAAAAAAAAAAAAACAATT‑‑‑AA‑AAATaaaaaaaaaaaaaaaa                                                                                              >  1:1007304/1‑128 (MQ=255)
                                aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATATTCAC‑AAAT‑AAAAAAAAAAAAAAACC‑‑AATAAA‑AATTaaaaaaaaaaaaaaa                                                                                               >  1:1607864/1‑128 (MQ=255)
                                aaGGTTAATTAAAATACCATAAAATTAAAAATTCTTATAATGTATATCCTCGTGATCTAATTATATATATGAAT‑ATATTAAC‑AAAT‑AAAAAAAAAAAAAAAAAC‑‑‑TAAA‑AAATaaaaaaaaaaaaaaaa                                                                                              >  1:496372/1‑128 (MQ=255)
                                  ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCAC‑AAAT‑AAAAAAAAAACAAACACC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaa                                                                                             >  2:2747456/1‑128 (MQ=255)
                                   gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTATTATATTTGTTT‑ATCTTCAC‑AAAT‑AAAAAAAAAACAAACCAATT‑‑‑AA‑AAATaaaaaaaaaaaaaaaaaaa                                                                                           >  1:3172399/1‑128 (MQ=255)
                                   gTTAAATAAAAAAAAAAAAAATTAAAAATTATTATAATTTATTTCCCCGGTTTATATTTTTTTTTTTGTTT‑ATAATAAA‑AAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaa                                                                                            <  1:843765/128‑1 (MQ=255)
                                    ttaattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCAC‑AAAT‑AAAAAAAAAACAATCAC‑‑ATTAAA‑AATTaaaaaaaaaaaaaaaaaaa                                                                                           >  2:3155066/1‑128 (MQ=255)
                                     taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCAC‑AAAT‑AAAAAAAAAACAATCCAC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaaa                                                                                          >  2:2819327/1‑128 (MQ=255)
                                     taattaaAATAAAAAAAAAATAAAAAATATTATAATTTATATAAAATTTATATATTTTTTTTTTTTTTT‑ATATTAAC‑AAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaaa                                                                                          <  2:619837/128‑1 (MQ=255)
                                      aattaaAATACCATAAAATTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTATTTAATTGTTT‑ATCTTCAA‑AAAT‑AAAAAAAAAACAATACCATTAAAAA‑Taaaaaaaaaaaaaaaaaaaaaa                                                                                           >  2:2731135/1‑128 (MQ=255)
                                       attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTT‑ATCTTCAC‑AAAT‑AAAAAAAAAACAA‑‑ACCAATTAAA‑AAATaaaaaaaaaaaaaaaaaaaaaa                                                                                        >  2:3135483/1‑127 (MQ=255)
                                         taaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCAC‑AAAT‑‑AAAAAAAAACAATAAAC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                     >  2:410217/1‑124 (MQ=255)
                                           aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCAC‑AAAT‑AAAAAAAAAACAAAACCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                    >  1:2716511/1‑123 (MQ=255)
                                                caaaaaaCTTAAAAAATTTTAAAATTTTTTTCCACGTGAATTATTTTTTTATTTTTTT‑ATATTAAA‑AAAA‑AAAAAAAAAAAAATCCCC‑TAAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                <  1:703272/124‑1 (MQ=255)
                                                acATAAAATAAAAAATTATTAAAAATTACAACATCCTTATATATTTTTTTATTTGTTT‑ATCTTAAA‑CAAT‑AAAAAAAAAAAAAACCCC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                <  1:279247/127‑1 (MQ=255)
                                                  aTAAAAATAATAATTTTTTTAATTTATATACTTCTTTTAAATTTTTTTTTTTTTTT‑ATAATAAA‑AAAA‑AAAAAAAAAAAAAACCCC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAaaacaaa                                                                              <  1:327799/128‑1 (MQ=255)
                                                     aaCTTAATAATTATTATAAATTATAACCTAGTGATCTATTTTTTTTTTTGTTT‑ATAATAAA‑AAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                         <  2:3027901/128‑1 (MQ=255)
                                                      acataaaaaatattATAATGTAGAACCTCGTTTTGATTTTTTTTATTTTTTT‑ATATTAAA‑AAAA‑AAAAAAAAAAAAATCCCCTTT‑‑AA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                         <  2:770944/116‑1 (MQ=255)
                                                      aattAATAATT‑TTAATATTAAGATCATCCTGATTAATTTTTTTATTTGTTT‑TTCTTAAC‑AAAT‑AAAAAATAAAAAATACC‑‑ATTAAA‑AATTTAAAAAAATAAAAAAAAAAAACTAAAAACAAACTCTAt                                                                        <  2:1997638/126‑1 (MQ=255)
                                                      aCTTAATAATTATTATAAATTACATACTCGTTTTATATTTTTTTATTTTTTT‑ATATTAAA‑AAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                         <  2:51903/128‑1 (MQ=255)
                                                         taataaTTCTTTTAAATTACATCCACTGGATATATTTTTTTATTTTTTT‑AACTTCAC‑AAAT‑AAAAAAAAAACAAAACCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                                     <  2:2848247/128‑1 (MQ=255)
                                                          tataatTCTTATAATTTATATTATCGTTTTTTTATTTTTTATTTTTTT‑ATATTTAA‑AAAA‑AAAAAAAAAAAAATACCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCt                                                                    <  2:2893562/127‑1 (MQ=255)
                                                          aataatTTTTATAATTTATATACTCTGTATCTTTTTTTTTATTTTTTT‑ATATTCA‑‑AAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                   <  2:563184/128‑1 (MQ=255)
                                                           aaaattgatataATTTATATCCTCTTTATATATTTTTTTATTTTTTT‑TAATTAAA‑AAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTa                                                                  <  1:439226/120‑1 (MQ=255)
                                                            taatTCTTTTAATGTTTTTACTCTTTATATATTTTTTTTTTTTTTT‑ATATTAAA‑AAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                   <  1:1461494/128‑1 (MQ=255)
                                                                         ttatatacTCGTTATATATTTTTTTTTTTTTTT‑ATATTAAA‑AAAA‑AAAAAAAAAAAAATACCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatt                                                      <  2:1172223/121‑1 (MQ=255)
                                                                             ttattatttatatatttttttattttttT‑ATAATAAA‑AAAA‑AAAAAAAAAAAAATCCCC‑‑ATAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                  <  2:182510/116‑1 (MQ=255)
                                                                             atactagttttatatttttttattttttT‑ATATTAAC‑AAAA‑AAAAAAAAAAAAAAAACC‑‑ATAAA‑AAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                <  1:2740403/116‑1 (MQ=255)
                                                                              actactttttttatttttttattttttT‑ATAATAAA‑AAAA‑AAAAAAAAAAAAAATCCCCTT‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                 <  2:387584/117‑1 (MQ=255)
                                                                               actttttattattttttttattttttt‑aTATTAAA‑AAAT‑AAAAAAAAAAAAATACCC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                 <  1:344062/116‑1 (MQ=255)
                                                                                atatttttattttttttttttttttT‑ATATTAAA‑AAAT‑AAAAAAAAAAAAATACCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcaca                                              <  2:26110/117‑1 (MQ=255)
                                                                                 atgttatatATTTTTTTTTTTTTTT‑ATATTAAA‑AAAA‑AAAAAAAAAAAAAAACCCTTAAAAA‑TAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                <  2:1512194/120‑1 (MQ=255)
                                                                                   ttttattttttttttAATTTTTT‑ATTATAAA‑AAAA‑AAAAAAAAAAAAAAACC‑‑ATTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                            <  2:130271/120‑1 (MQ=255)
                                                                                   tttattatattttttattttttt‑atTATAAA‑AAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                            <  2:1101097/119‑1 (MQ=255)
                                                                                   ttGATATATTTTTTTATTTTTTT‑ATATTAAA‑AAAA‑AAAAAAAAAAAAATCCCC‑‑ATAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                            <  2:2961743/127‑1 (MQ=255)
                                                                                     tttattttttttttttttttt‑tttttATA‑AAAT‑AAAAAAAAAAAAATCACC‑TTTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                           <  2:46182/122‑1 (MQ=255)
                                                                                     gATATATTTTTTTATTTTTTT‑AACATCA‑‑AAAA‑AAAAAAAAAAAAAAAACCAATAAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                           <  2:722190/128‑1 (MQ=255)
                                                                                         attttttttATTT‑TTA‑AAATTAAA‑AAAA‑AAAAAAAAAAAAAAACC‑‑ATTAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                     <  2:2219029/126‑1 (MQ=255)
                                                                                          tttttttttttttTAT‑ATATAAAA‑AAAT‑AAAAAAAAAAAAAAACC‑‑ATTAAA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                     <  1:1707966/127‑1 (MQ=255)
                                                                                          aTTTTTTTTTTTGTTT‑ATCATAAA‑AAAA‑AAAAAAAAAACAAAACCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                     <  1:2873612/128‑1 (MQ=255)
                                                                                            ttttttattttttt‑atTTTTAA‑AAAA‑AAAAAAAAAAAAAATCCC‑‑ATAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                   <  2:2446671/128‑1 (MQ=255)
                                                                                            ttttttattttttt‑atTATAAA‑AAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                 <  2:2147505/128‑1 (MQ=255)
                                                                                            ttttttATTTGTTTAATTTAAAA‑AAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                   <  2:910056/128‑1 (MQ=255)
                                                                                            ttttttAATTTTTT‑ATTATAAA‑AAAT‑AAAAAAAAAAAAATACCCAT‑‑‑AT‑AAATTTAAAAAAAAAAAAAAAAAAACTAAATACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                  <  1:2569432/128‑1 (MQ=255)
                                                                                              ttttattt‑ttt‑attTTAAAAAAAA‑AAAAAAAAAAAAAAAACCTAAAAAA‑TAAAAATAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                   <  1:761612/128‑1 (MQ=255)
                                                                                               tttATTTGTTT‑ATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAAATAAAAACAAAAGCAATTTATAAAAATTCCATATATAACCACAATTTTTTTTTtaaa                                >  2:2550699/1‑128 (MQ=255)
                                                                                                  aTTTTTTT‑ATTATAAA‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                             <  2:2329949/128‑1 (MQ=255)
                                                                                                    tttttt‑ATATTCAA‑AAAA‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                           <  2:3188396/125‑1 (MQ=255)
                                                                                                       ttt‑ATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAA‑TAAAAAAAACCAATATATATTAAAATTCCAAATTATACACCATTTTATTTTTAAAATATGATAtt                       >  2:2928180/1‑128 (MQ=255)
                                                                                                         ttttaattaaaaaaa‑aaaaaaaaaaaaATTCCCTTAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGat                          <  2:731451/117‑1 (MQ=255)
                                                                                                          ttatataaaaaaaa‑aaaaaaaaaaaaATACCCTTT‑‑AA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                       <  2:1014662/118‑1 (MQ=255)
                                                                                                          taaaaataaaaaaa‑aaaaaaaaaaCAATACC‑‑ATTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                       <  1:1210251/118‑1 (MQ=255)
                                                                                                             tattaaaaaaT‑AAAAAAAAAACAATACCC‑‑TAAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGAc                    <  2:1592948/121‑1 (MQ=255)
                                                                                                                tac‑aAAA‑AAAAAAAAAAAAAACACATTAAAAATTAATAATAAAAAAAAAAAAAAAAAATTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                   <  2:2685811/127‑1 (MQ=255)
                                                                                                                taaaaaaa‑aaaaaaaaaaaaATCACATT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAAGTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataa                <  1:2990359/124‑1 (MQ=255)
                                                                                                                taaaaaaT‑AAAAAAAAAAAAATAACC‑‑TTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataa                <  2:1734711/124‑1 (MQ=255)
                                                                                                                  c‑aAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAA‑AAAAAACAAACACTATTTATTAAAAATCCAAATTTAACAACATTTTATTTTAAAAATAAAATATTTAAAAAatat             >  1:2752206/1‑128 (MQ=255)
                                                                                                                        aaaaaaaaaaaaaATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata          <  2:2537304/127‑1 (MQ=255)
                                                                                                                        aaaaaaaaaaaCAAAACCATTT‑‑AA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata          <  2:123644/127‑1 (MQ=255)
                                                                                                                          aaaaaaaaaaaaACCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc        <  2:331876/128‑1 (MQ=255)
                                                                                                                            aaaaaaaCAATTCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTaa     <  2:3056636/128‑1 (MQ=255)
                                                                                                                                aaaCAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAAAAAAATGTTATAAAATAACGTTTTTTACAAAATTTTTTTTTTAAAAAAAAAAATTGAAataataattttaatatat  >  1:1327813/1‑116 (MQ=255)
                                                                                                                                   |                                                                                                                               
AAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATAT  >  CP016816/202349‑202603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑