BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	202,480	0	T	A	32.2%	300.3 / 112.4	381	intergenic (+258/‑417)	JCVSYN2_00840/JCVSYN2_00845	hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand): ref base T (105/150); new base A (40/81); total (150/231)
Fisher's exact test for biased strand distribution p-value = 1.41e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 405 total aligned reads displayed.

TAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATAT  >  CP016816/202353‑202603

tagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAACAAt                                                                                                                              <  2:711932/128‑1 (MQ=255)

tagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAACAAt                                                                                                                              <  1:261589/128‑1 (MQ=255)

 agtGAAGTTAGTTTAAATAATAGAGTTAATGTTAATTAAAATAACATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAACAATc                                                                                                                             <  1:510219/128‑1 (MQ=255)

 agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAACAATc                                                                                                                             >  1:299270/1‑128 (MQ=255)

 agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAAATCTTATAATGTAGATCATCTTAATCTATTTTTATAT‑ATATTT‑AT‑CTA‑AAAAAAT‑AAAAAAAAAAAAAta                                                                                                                             >  2:3149333/1‑127 (MQ=255)

  gtctaGTTATTGTAAATAATTGTGGTAAGTTTAATTAAAATAACATAAACTTAATAATTCATATAATGTAGATCCTCGTGATCTATTTTTTTTA‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAACAATcc                                                                                                                            <  2:2009801/124‑1 (MQ=255)

  gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAACAATcc                                                                                                                            <  2:2420484/128‑1 (MQ=255)

  gtGAAGTAAGTGTTAATAATATAGTTAAGTTTAATTAAAATACCATAAACTTAATAATTATTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAACAATcc                                                                                                                            <  1:687095/128‑1 (MQ=255)

  gtGAAGTAAGTGTAAATAATAGAGTTTAGGTTAATTAAAATACCATAAACATAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAACAATcc                                                                                                                            <  2:1720263/128‑1 (MQ=255)

   tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAACAATccc                                                                                                                           >  1:357631/1‑128 (MQ=255)

    ttatttAGTGTTAATTATTTTGTTTAGGTTAATTAAAATAACATAAATATAATAATTCATATAATGTATATCCTCGTGATCTTTTTTTTTAT‑TTGTTT‑AT‑GTT‑CACAAAT‑AAAAAAAAAACAATcccc                                                                                                                          <  2:1941454/124‑1 (MQ=255)

     aagtaagtTTAAATAAAAGAGTTAAGGTTAATTAAAATACAATAAACTTAATAAATCTTAAAATGTAGATCCTCGTGATCAATTTTTTTAT‑TTGTTT‑AT‑CTT‑CACAAATAAAAAAAAAAACAATcccc                                                                                                                          <  2:1216985/128‑1 (MQ=255)

     aactaaGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTTTTTTTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAACAATCCCCt                                                                                                                         <  1:2420619/123‑1 (MQ=255)

      attttttttAATTATTAGAGTTAATGTTAATTAAAATTCCTTAAAATTAATAATTCTTTTAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAACAATCCCCtt                                                                                                                        <  1:570082/120‑1 (MQ=255)

      aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAAAAATACCAtt                                                                                                                        >  1:3130468/1‑128 (MQ=255)

       tttattttatataataGATTTATGTTTAATTATAATAAAATAAATTTAATATTTCTTATAATTTATATACTGGTGATTTATTTTTTTAT‑TTGTTT‑AT‑GTT‑GAAATTT‑AAAAAAAAAACAATCCCCtta                                                                                                                       <  1:2357790/118‑2 (MQ=255)

       tatattgtAAATAAAAGAGTTAAGTTTAATTAAAATAAAATAAACTTATTAATTCTTATAATTTAGATCCTCTTGATCAATTTTTTTAT‑TTGTTT‑AT‑CAT‑CACAAAT‑AAAAAAAAAACAATCCCCtta                                                                                                                       <  2:2292666/123‑2 (MQ=255)

       gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTATTTTTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAAAAAtaacaata                                                                                                                       >  1:3208405/1‑121 (MQ=255)

       gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAACAATcccataa                                                                                                                       >  1:2904223/1‑124 (MQ=255)

       gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAACAATCACCtta                                                                                                                       >  2:2768213/1‑127 (MQ=255)

          aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTAT‑TTTTTT‑AT‑CTT‑AACAAAT‑AAAAAAAAAAAAAtaaacataaaa                                                                                                                    >  2:726962/1‑118 (MQ=255)

          aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAACAATcaaattaaaa                                                                                                                    >  2:2485117/1‑119 (MQ=255)

            tgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAACAATCCCAttaaaaat                                                                                                                  >  2:371721/1‑122 (MQ=255)

            tgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAACAATACACttaaaaat                                                                                                                  >  1:1119358/1‑122 (MQ=255)

                aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAACAATCACCttaaaaattaaa                                                                                                              >  2:337825/1‑118 (MQ=255)

                 ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTT‑AT‑ATT‑CAAAAAT‑AAAAAAAAAAAAATACCCtt‑‑‑aa‑aaataaaaa                                                                                                         >  1:2935883/1‑128 (MQ=255)

                     taGAGTTAAGGTAAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAAAAATCACATT‑‑‑AA‑AAATaaaaaaaaa                                                                                                     >  2:2917663/1‑128 (MQ=255)

                      agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaa                                                                                                     >  1:3057293/1‑128 (MQ=255)

                      agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTAT‑TTTTTT‑AT‑CTT‑CAAAAAT‑AAAAAAAAAACAAAAACC‑‑TAAAA‑AAATaaaaaaaaa                                                                                                     >  1:1098895/1‑128 (MQ=255)

                         gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTAAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAACAATACC‑‑‑ATAAA‑AAATaaaaaaaaaaaaa                                                                                                 >  2:2645386/1‑128 (MQ=255)

                          ttAAGGTTAATTAAAATACCATAAACTTAATAAATCTTATAATTTATATCATCTTTATCTAATTTATTAT‑TTTTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAAAAAAAAC‑‑‑ATAAA‑AAATaaaaaaaaaaaaaa                                                                                                >  2:412607/1‑128 (MQ=255)

                           tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑‑TAAA‑AAATtaaaaaaaaaaaaaa                                                                                               >  1:2851330/1‑128 (MQ=255)

                            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑TAAAAAAAAACAATCCCC‑‑‑TAAA‑AAATtaaataaaaaaaaaaa                                                                                              >  1:2728326/1‑128 (MQ=255)

                            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAACAAACCCC‑‑ATAAA‑AAATaaaaaaaaaaaaaaa                                                                                               >  1:2784375/1‑128 (MQ=255)

                            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAAAAAACACC‑‑‑TAAA‑AAATaaaaaaaaaaaaaaaa                                                                                              >  1:2045293/1‑128 (MQ=255)

                            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAAAAAAACAATT‑‑‑AA‑AAATaaaaaaaaaaaaaaaa                                                                                              >  1:1007304/1‑128 (MQ=255)

                            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGTGATCTATTATTAAAT‑TAATTT‑AT‑CTA‑CACAAAT‑AAAAAAAAAAAAAAACC‑‑AAAAAA‑AAATaaaaaaaaaaaaaaa                                                                                               >  1:1941672/1‑128 (MQ=255)

                             aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTATTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAACAATCCAC‑‑‑TAAA‑AAATaaaaaaaaaaaaaaaaa                                                                                             >  2:1645201/1‑128 (MQ=255)

                              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAACAATCCAC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaa                                                                                             >  2:2499293/1‑128 (MQ=255)

                              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAACAATACCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaa                                                                                             >  1:1667023/1‑128 (MQ=255)

                              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAACAATAACCaaaaaaa‑aaaaaaaaaaaaaaaaaaa                                                                                               >  1:1487684/1‑128 (MQ=255)

                              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTT‑AT‑ATT‑CACAAAT‑AAAAAAAAAACAAAAAC‑‑AATAAA‑AATTaaaaaaaaaaaaaaaaa                                                                                             >  2:1841893/1‑128 (MQ=255)

                               gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTATTATAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAACAAACCAATT‑‑‑AA‑AAATaaaaaaaaaaaaaaaaaaa                                                                                           >  1:3172399/1‑128 (MQ=255)

                               gTTAAATAAAAAAAAAAAAAATTAAAAATTATTATAATTTATTTCCCCGGTTTATATTTTTTTTT‑TTGTTT‑AT‑AAT‑AAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaa                                                                                            <  1:843765/128‑1 (MQ=255)

                                ttaattaaAATAACATAAAATTAAAAATTATTAAAATTTATAACAACTTTATATATTTTTTTAT‑TTTTTT‑AA‑ATT‑AAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaa                                                                                           <  2:801899/128‑1 (MQ=255)

                                 taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAACAATc                                                                                                                             <  1:2480943/96‑1 (MQ=255)

                                 taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAACAATCCAC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaaa                                                                                          >  2:2819327/1‑128 (MQ=255)

                                 taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaaa                                                                                          >  2:2873612/1‑128 (MQ=255)

                                 taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TAGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaac                                                                                          >  1:761257/1‑127 (MQ=255)

                                   attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTATTATAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAAAAAACCCATTAAAAA‑TAaaaaaaaaaaaaaaaaaaaaaa                                                                                          >  2:1295156/1‑128 (MQ=255)

                                     ttaaataaaataAAATTAATAATTATTAAAAATTATAAACTTGTTATTTAATTTTTTAT‑TTGTTT‑AT‑ATT‑TACAAAT‑ATAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaactaaa                                                                                      <  2:1155069/126‑6 (MQ=255)

                                     taaAATACCATAAACTTAATAATTATTATAATGTAGATCCTCTTGATCTAATTTTTTAT‑TTTTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAACAATCCAATTAAAAA‑Taaaaaaaaaaaaaaaaaaaaaaaaa                                                                                        >  1:181000/1‑127 (MQ=255)

                                      aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAACAATCCC‑‑ATTAAA‑AATTaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                     >  1:2561127/1‑124 (MQ=255)

                                       aaaaACCATAAAATTAATTAATCATAAAATTTACTTACTTGTGATCTTTTTTTTAAT‑TTTTTT‑AT‑CTT‑CAAAAAA‑AAAAAAAAAACAAACCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTaaa                                                                                    <  2:2746393/128‑1 (MQ=255)

                                       aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAACAAACCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                    >  1:1623399/1‑123 (MQ=255)

                                        aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTATTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAACAATCAC‑‑ATTAAA‑AATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                   >  2:782610/1‑128 (MQ=255)

                                            caaTAAAAATAATAAATCTTATAATTGATATCCTCTTTATATTTTTTTTTTT‑TTTTTT‑AT‑AAT‑AAAAAAT‑AAAAAAAAAACAATCCCCTTAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAaaac                                                                                 <  2:2550804/126‑1 (MQ=255)

                                                  aattAATAATTATTATAATTTAATAACTCTTTATATATTTTTTTTA‑TTTTTT‑AT‑ATA‑TAAAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAt                                                                        <  2:518869/126‑1 (MQ=255)

                                                       ataatTCTTATAATGTAGATACTAGTGATCTATTTTTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                   <  2:100418/128‑1 (MQ=255)

                                                         aatTATTAAAATTTTTATCCTCGTGTTATTTTTTTTTAT‑TTTTTT‑AT‑ATT‑AAAAAAT‑AAAAAAAAAAAAATACCC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                   <  2:2458343/128‑1 (MQ=255)

                                                         aaatCTTATTATTTACTTGCTCGTGATTTATTTTTTTAT‑TTTTTA‑AT‑ATT‑CACAAAA‑TAAAAAAAAAAAAACCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTa                                                                  <  2:2538118/125‑1 (MQ=255)

                                                                   aTGTACAACCACGTGATCTATTTTTTTAT‑TTTTTT‑AT‑CAT‑CAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCta                                                        <  2:2401526/128‑1 (MQ=255)

                                                                         atactagttttatatttttttat‑tttttT‑AT‑ATT‑AACAAAA‑AAAAAAAAAAAAAAAACC‑‑ATAAA‑AAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                <  1:2740403/116‑1 (MQ=255)

                                                                          tcctagtgtataaTTTTTTTAA‑TTGTTT‑AT‑TTTACAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                  <  1:2678410/116‑1 (MQ=255)

                                                                          taatctttatatATTTTTTAAT‑TTTTTT‑AT‑CAT‑AAAAAAA‑AAAAAAAAAACAATACC‑‑ATTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                 <  2:2990024/117‑1 (MQ=255)

                                                                           aatatttatttatttttttat‑tttttT‑AA‑AAT‑AAAAAAT‑AAAAAAAAAAAAAAACCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                               <  2:549285/118‑1 (MQ=255)

                                                                            tattttttttttttttttAT‑TT‑TTT‑AT‑ATT‑AAAAAAT‑AAAAAAAAAAAAATCACCTTAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                <  2:2938804/117‑1 (MQ=255)

                                                                            atatttttattttttttttt‑tttttT‑AT‑ATT‑AAAAAAT‑AAAAAAAAAAAAATACCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcaca                                              <  2:26110/117‑1 (MQ=255)

                                                                            actatgttCTATTTTTTTTT‑TTTTTT‑AA‑AAT‑AAAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                               <  2:2209287/121‑1 (MQ=255)

                                                                             actttttttATTTTTTTTT‑TTTTTT‑AT‑TAT‑AAAAAAA‑AAAAAAAAAAAAAAACCC‑‑ATAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcaca                                              <  2:3041010/120‑1 (MQ=255)

                                                                              ttttttaattttttttAT‑TTTGTT‑AT‑TTT‑CAAAAAT‑TAAAAAAATATAATACCCTTAAAAA‑TTATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                               <  1:2832070/119‑1 (MQ=255)

                                                                              agttatatatttttttat‑tttttT‑AT‑ATT‑AAAAAAT‑AAAAAAAAAAAAATACCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACat                                             <  1:259865/121‑1 (MQ=255)

                                                                               tttattatattttttat‑tttttt‑at‑TAT‑AAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                            <  2:1101097/119‑1 (MQ=255)

                                                                                 tttattttttttttt‑tttttt‑tt‑ttt‑ATAAAAT‑AAAAAAAAAAAAATCACC‑TTTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                           <  2:46182/122‑1 (MQ=255)

                                                                                 ttattaattttttAT‑TTTTTT‑TT‑ATT‑AAAAAAA‑AAAAAAAAAAAAATACCC‑TTAAAA‑ATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                           <  2:2718521/121‑1 (MQ=255)

                                                                                 gtaatATTTTTTTAT‑TTGTTT‑AA‑ATT‑AAAAAAA‑AAAAAAAAAACAAAACC‑‑ATTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                          <  2:755283/124‑1 (MQ=255)

                                                                                  tttattttttttAA‑TTTTTT‑ATAATT‑CAAAAAA‑AAAAAAAAAAAAAACCCATT‑‑‑AA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                         <  2:1496290/123‑1 (MQ=255)

                                                                                  atatatttttttat‑tttttT‑AT‑ATA‑AAAAAAT‑AAAAAAAAAAAAATAACC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                         <  2:1454284/125‑1 (MQ=255)

                                                                                    tattttttttat‑tttttt‑tt‑att‑AAAAAAT‑AAAAAAAAAAAAATAACC‑‑‑TAAA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttattt                                      <  1:734131/125‑1 (MQ=255)

                                                                                     tttttttttATATTTTTT‑TT‑ATT‑AAAAAAA‑AAAAAAAAAAAAAAACCCTTAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                         <  2:3208405/126‑1 (MQ=255)

                                                                                      tttttttttt‑tttTAT‑AT‑ATA‑AAAAAAT‑AAAAAAAAAAAAAAACC‑‑ATTAAA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                     <  1:1707966/127‑1 (MQ=255)

                                                                                      tatttattTT‑TTTTTT‑AT‑AAT‑AAAAAAA‑AAAAAAAAAAAAATATCC‑TAAAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttattt                                      <  2:1357065/126‑1 (MQ=255)

                                                                                      atttttttat‑tttttt‑AT‑ATT‑AACAAAA‑AAAAAAAAAAAAATACCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                     <  2:389630/128‑1 (MQ=255)

                                                                                       tttttttat‑tttttt‑aT‑ATT‑AAAAAAA‑AAAAAAAAAAAAATCCCCTTT‑‑AA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                    <  2:2095933/128‑1 (MQ=255)

                                                                                        tttttttt‑tttttt‑AT‑ATT‑CAAAAAA‑AAAAAAAAAACAAACCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                  <  1:2528358/128‑1 (MQ=255)

                                                                                        ttttttAT‑TTGTTTAAT‑TTA‑AAAAAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                   <  2:910056/128‑1 (MQ=255)

                                                                                         ttttttt‑tttttT‑AT‑TTT‑AAAAAAT‑AAAAAAAAAACAAAAACC‑‑TTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                  <  2:1465762/128‑1 (MQ=255)

                                                                                            tttt‑tttttT‑AT‑TTT‑TAAAAAT‑AAAAAAAAAAAAATAAAC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaaa                                <  1:1550188/125‑1 (MQ=255)

                                                                                             tAT‑TTTTTT‑AT‑ATT‑AAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                              <  2:175905/128‑1 (MQ=255)

                                                                                              tt‑tttttT‑AT‑ATT‑AAAAAAA‑AAAAAAAAAAAAAT‑CCCATTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                              <  2:3073258/127‑1 (MQ=255)

                                                                                              aT‑TTTTTT‑AT‑TTT‑AAAAAAA‑AAAAAAAAAAAAATTCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                             <  2:1550622/128‑1 (MQ=255)

                                                                                              aT‑TTTTTT‑AT‑ATT‑TAAAAAT‑AAAAAAAAAAAAAACACC‑‑TTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                            <  2:601305/128‑1 (MQ=255)

                                                                                                 tttttt‑AT‑ATT‑AAAAAAA‑AAAAAAAAAAAAATAAC‑‑ATTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                           <  2:3171651/125‑1 (MQ=255)

                                                                                                      tttttttttaaaaaaT‑AAAAAAAAAAAAATACCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                         <  1:396018/116‑1 (MQ=255)

                                                                                                        ttatataaaaaaaa‑aaaaaaaaaaaaaaACCCTT‑‑‑AA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                      <  2:2838841/118‑1 (MQ=255)

                                                                                                        taaaaataaaaaaa‑aaaaaaaaaaCAATACC‑‑ATTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                       <  1:1210251/118‑1 (MQ=255)

                                                                                                           aaattaaaaaa‑aaaaaaaaaaaaaaaaCCA‑TTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                     <  1:342284/121‑1 (MQ=255)

                                                                                                               tacaAAA‑AAAAAAAAAAAAAACACATTAAAAATTAATAATAAAAAAAAAAAAAAAAAATTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                   <  2:2685811/127‑1 (MQ=255)

                                                                                                                 caAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAA‑AAAAAACAAACACTATTTATTAAAAATCCAAATTTAACAACATTTTATTTTAAAAATAAAATATTTAAAAAatat             >  1:2752206/1‑128 (MQ=255)

                                                                                                                              aaaCAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAAAAAAATGTTATAAAATAACGTTTTTTACAAAATTTTTTTTTTAAAAAAAAAAATTGAAataataattttaatatat  >  1:1327813/1‑116 (MQ=255)

TAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTT‑AT‑CTT‑CACAAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATAT  >  CP016816/202353‑202603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`