Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4850T.72.1% 314.8 / inf 313intergenic (+263/‑412)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base T (19/57);  new base . (74/122);  total (108/205)
Fisher's exact test for biased strand distribution p-value = 4.78e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.68e-01

Only 100 of 343 total aligned reads displayed.

AAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATT‑TTTTTATTTGTTT‑AT‑CTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATAT  >  CP016816/202358‑202603
                                                                                                                                  |                                                                                                                       
aactaaGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTTTT‑TTTTTATTTGTTT‑AT‑CTTCACAAATAAAAAAAAAACAATCCCCt                                                                                                                         <  1:2420619/123‑1 (MQ=255)
  gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATT‑TTTTTATTTGTTT‑AT‑CTTCACAAATAAAAAAAAAACAATCCCCtta                                                                                                                       <  2:2492011/128‑2 (MQ=255)
  gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATT‑TTTTTATTTGTTT‑AT‑CTTCAAAAATAAAAAAAAAAAAATACACtta                                                                                                                       >  2:2778103/1‑127 (MQ=255)
   ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATT‑TTTTTATTTGTTT‑AT‑CTTCACAAATAAAAAAAAAACAAACCCCtaaa                                                                                                                      >  1:2961743/1‑125 (MQ=255)
     aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATT‑TTTTTATTTGTTT‑AT‑CTTCACAAATAAAAAAAAAAAAATCCCCttaaaa                                                                                                                    >  1:388423/1‑124 (MQ=255)
       tgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATT‑TTTTTATTTGTTT‑AT‑CTTCACAAATAAAAAAAAAACAATCCCAttaaaaat                                                                                                                  >  2:371721/1‑122 (MQ=255)
           aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATT‑TTTTTATTTGTTT‑AT‑CTTCACAAATAAAAAAAAAACAATCACCttaaaaattaaa                                                                                                              >  2:337825/1‑118 (MQ=255)
                    gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATT‑TTTTAATTTGTTT‑AT‑CTTCACAAATAAAAAAAAAACAATACC‑‑‑ATAAAAAATaaaaaaaaaaaaa                                                                                                  >  2:2645386/1‑128 (MQ=255)
                     ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATT‑TTTTTATTTGTTT‑AT‑CTTCACAAATAAAAAAAAAACAATCCAC‑‑TTAAAAATTaaaaaaaaaaaaa                                                                                                  >  2:271236/1‑128 (MQ=255)
                     ttAAGGTTAATTAAAATACCATAAACTTAATAAATCTTATAATTTATATCATCTTTATCTAAT‑TTATTATTTTTTT‑AT‑CTTCACAAATAAAAAAAAAAAAAAAAC‑‑‑ATAAAAAATaaaaaaaaaaaaaa                                                                                                 >  2:412607/1‑128 (MQ=255)
                      tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATT‑TTTTTATTTGTTT‑AT‑CTTCACAAATAAAAAAAAAACAATCCCC‑‑‑TAAAAAATtaaaaaaaaaaaaa‑a                                                                                               >  1:2851330/1‑128 (MQ=255)
                      tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATT‑TTTTTATTTGTTT‑AT‑CTTCAAAAATAAAAAAAAAAAAAT‑‑CAAATTAAAAAATaaaaaaaaaaaaaa                                                                                                 >  1:1645183/1‑128 (MQ=255)
                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATT‑TTTTTATTTGTTT‑AT‑CTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTtaaaaaaaaaaaaa‑a                                                                                               >  1:2615315/1‑128 (MQ=255)
                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATT‑TTTTTATTTGTTT‑AT‑CTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaa‑a                                                                                               >  2:2539443/1‑128 (MQ=255)
                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATT‑TTTTTATTTGTTT‑AT‑CTTCACAAATAAAAAAAAAAAAAAACAATT‑‑‑AAAAATaaaaaaaaaaaaaa‑aa                                                                                              >  1:1007304/1‑128 (MQ=255)
                        aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATT‑TTTTTATTTTTTT‑AT‑CTTCACAAATAAAAAAAAAAAAAACCCC‑‑‑TAAAAAATtaaaaaaaaaaaaa‑aaa                                                                                             >  2:2414162/1‑128 (MQ=255)
                        aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATT‑ATTTTATTTGTTT‑AT‑CTTCACAAATAAAAAAAAAACAATCCAC‑‑‑TAAAAAATaaaaaaaaaaaaaa‑aaa                                                                                             >  2:1645201/1‑128 (MQ=255)
                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATT‑TTTTTATTTGTTT‑AT‑CTTCACAAATAAAAAAAAAACAATCCCC‑‑‑TAAAAAATaaaaaaaaaaaaaa‑aaaa                                                                                            >  1:1520489/1‑128 (MQ=255)
                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATT‑TTTTTATTTGTTT‑AT‑CTTCACAAATAAAAAAAAAACAATACAC‑‑‑TAAAAAATtaaaaaaaaaaaaa‑aaaa                                                                                            >  1:856112/1‑128 (MQ=255)
                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATT‑TTTTTATTTGTTT‑AT‑CTTCACAAATAAAAAAAAAACAAACACC‑‑TTAAAAATTaaaaaaaaaaaaaa‑aaa                                                                                             >  2:2747456/1‑128 (MQ=255)
                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATT‑TTTTTATTTGTTT‑AT‑CTTCACAAATAAAAAAAAAAAAAACAC‑‑‑AAAAAAAATaaaaaaaaaaaaaa‑aaaa                                                                                            >  1:69321/1‑128 (MQ=255)
                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATT‑TTTTTATTTGTTT‑AT‑CTTCACAAATAAAAAAAAAAAAAAACCAATT‑‑AAAAATaaaaaaaaaaaaaa‑aaa                                                                                             >  1:2650444/1‑128 (MQ=255)
                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATT‑TTATTATTTGTTA‑AT‑CTTAACAAATAAAAAAAAAACAATCCAC‑‑‑TAAAAAATtaaaaaaaaaaaaa‑aaaa                                                                                            >  2:2867253/1‑128 (MQ=255)
                          gTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTAGATCATCTTGATCTATT‑TTTTTATTTTTTT‑AT‑CTTAACAAATAAAAAAAAAAAAAAAAC‑‑‑ATAAAAAATaaaaaaaaaaaaaa‑aaaaa                                                                                           >  1:190269/1‑128 (MQ=255)
                          gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATT‑ATTATATTTGTTT‑AT‑CTTCACAAATAAAAAAAAAACAAACCAATT‑‑‑AAAAATaaaaaaaaaaaaaa‑aaaaa                                                                                           >  1:3172399/1‑128 (MQ=255)
                          gTTAATTAAAATACCATAAACTTAATAATTCTTATAATATATATCCTCATAAACTATA‑TATATAATTATTA‑AT‑CTTCACAAATAAAAAAAAAAAAAACACATaaaaaaaaaaaaaaaaaaaaaaaa‑aa                                                                                              >  1:2028981/1‑128 (MQ=255)
                           ttaattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATT‑TTTTTATTTGTTT‑AT‑CTTCACAAATAAAAAAAAAACAATCAC‑‑ATTAAAAATTaaaaaaaaaaaaaa‑aaaaa                                                                                           >  2:3155066/1‑128 (MQ=255)
                            taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATT‑TTTTTATTTGTTT‑AT‑CTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaa‑aaaaaa                                                                                          >  1:3026621/1‑128 (MQ=255)
                            taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATT‑TTTTTATTTGTTT‑AT‑CTTCACAAATAAAAAAAAAACAATCCAC‑‑TTAAAAATTaaaaaaaaaaaaaa‑aaaaaa                                                                                          >  2:2819327/1‑128 (MQ=255)
                            taattaaAATACCATAAAATTAAAAATTTTTATAATGTATATCATCTTTATCTATT‑TTTTTAATTTTTT‑AT‑ATTCAAAAAAAAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaa‑aaaaaa                                                                                          <  2:2235869/128‑1 (MQ=255)
                             aattaaAATACCATAAAATTAATAATTCTTATAATGTAGATCCTCTTGATCTATT‑TATTTAATTGTTT‑AT‑CTTCAAAAATAAAAAAAAAACAATACCATTAAAAATaaaaaaaaaaaaaaaaa‑aaaaa                                                                                           >  2:2731135/1‑128 (MQ=255)
                              attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATT‑TTATTATTATTTT‑AT‑ATTCACAAATAAAAAAAAAAAAA‑‑ACCAATAAAAAATTaaaaaaaaaaaaaa‑aaaaaaaa                                                                                        >  1:567076/1‑127 (MQ=255)
                              attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATT‑ATTATATTTGTTT‑AT‑CTTCACAAATAAAAAAAAAAAAAACCCATTAAAAATAaaaaaaaaaaaaaaaa‑aaaaaa                                                                                          >  2:1295156/1‑128 (MQ=255)
                                ttaaataaaataAAATTAATAATTATTAAAAATTATAAACTTGTTATTTAAT‑TTTTTATTTGTTT‑AT‑ATTTACAAATATAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaa‑aaaaactaaa                                                                                      <  2:1155069/126‑6 (MQ=255)
                                taaAATACCATAAACTTAATAATTATTATAATGTAGATCCTCTTGATCTAAT‑TTTTTATTTTTTT‑AT‑CTTCACAAATAAAAAAAAAACAATCCAATTAAAAATaaaaaaaaaaaaaaaaa‑aaaaaaaa                                                                                        >  1:181000/1‑127 (MQ=255)
                                 aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATT‑TTTTTATTTGTTT‑AT‑CTTCACAAATAAAAAAAAAACAATCCC‑‑ATTAAAAATTaaaaaaaaaaaaaa‑aaaaaaaaaaa                                                                                     >  1:2561127/1‑124 (MQ=255)
                                  aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATT‑TTTTTATTTGTTT‑AT‑CTTCACAAATAAAAAAAAAACAAAACCC‑‑TTAAAAATTaaaaaaaaaaaaaa‑aaaaaaaaaaaa                                                                                    >  1:2716511/1‑123 (MQ=255)
                                  aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTAGTGATCTATT‑TTTTTATTTGTTT‑AT‑CTTCAAAAATAAAAAAAAAACAAT‑‑CAAATAAAAAATTaaaaaaaaaaaaaa‑aaaaaaaaaaaa                                                                                    >  1:46182/1‑123 (MQ=255)
                                  aaaTAACATAAAATTAAAAATTTTTATAATGTTTTACATGGGGTTTTATTATTTTTATTTTTTT‑TT‑TTACA‑AAAAAAAAAAAAAACAAACCCC‑‑TTAAAAATTAAAAAAAAAAAAAA‑AAAAAAACTaaa                                                                                    <  1:2476516/128‑1 (MQ=255)
                                   aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATT‑TTTTTATTTTTTT‑AT‑CTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTAaaaaaaaaaaaaa‑aaaaaaaaaaaaa                                                                                   >  2:2940149/1‑128 (MQ=255)
                                   aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATT‑ATTTTATTTGTTT‑AT‑CTTCACAAATAAAAAAAAAACAATCAC‑‑ATTAAAAATTAaaaaaaaaaaaaa‑aaaaaaaaaaaaa                                                                                   >  2:782610/1‑128 (MQ=255)
                                    aaaacataaacataaaAATTCTTAAAATTTAGATCATCTTTTTATATT‑TTTTTATTTTTTT‑AT‑CTTAAAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAAAATTAAAAAAAAAAAAAA‑AAAAAAACTaaaaa                                                                                  <  1:1104681/124‑1 (MQ=255)
                                     tacaaaaaaaTTAAAAATTTTTATAATTTATATACTCTTTTTTTATT‑TTTTTATTTTTTT‑AT‑ATTAAAAAAAAAAAAAAAAAAAAAACCC‑CTTAAAAAATAAAAAAAAAAAAAA‑AAAAAAACTaaaaa                                                                                  <  1:1134689/122‑1 (MQ=255)
                                     tACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATT‑TTTTTATTTGTTT‑AT‑CTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAA‑AAAAAAAATAAaaac                                                                                 >  1:3063722/1‑128 (MQ=255)
                                       caaTAAAAATAATAAATCTTATAATTGATATCCTCTTTATATTTT‑TTTTTTTTTTTTT‑AT‑AATAAAAAATAAAAAAAAAACAATCCCCTTAAAAATTAAAAAAAAAAAAAAAA‑AAAAAAACTAAaaac                                                                                 <  2:2550804/126‑1 (MQ=255)
                                       acATAAAATAAAAAATTATTAAAAATTACAACATCCTTATATATT‑TTTTTATTTGTTT‑AT‑CTTAAACAATAAAAAAAAAAAAAACCCC‑TTAAAAATTAAAAAAAAAAAAAAA‑AAAAAAACTAAaaaca                                                                                <  1:279247/127‑1 (MQ=255)
                                        cATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATT‑TTTTTATTTGTTT‑AT‑CTTCACAAATAAAAAAAAAACAATCCC‑‑ATTAAAAATTAAAAAAAAAAAAAATAAAAAAAAAAAaaacaa                                                                               >  1:1575779/1‑128 (MQ=255)
                                             aattAATAATTATTATAATTTAATAACTCTTTATATATT‑TTTTTTATTTTTT‑AT‑ATATAAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTAt                                                                        <  2:518869/126‑1 (MQ=255)
                                             aattAAAAATTCATAAAATTTATATTCACGTGATTTTTT‑TTTTTTTTTTTTT‑AT‑CTTCAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTa                                                                         <  1:1675869/126‑1 (MQ=255)
                                                       tCTTATAATGTTGATCCTAGTTATCTATT‑TTTTTATTTTTTT‑AT‑ATTAACAAATAAAAAAAAAACAATCCCCAT‑‑‑AAAAATTAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAAt                                                              <  2:2904223/128‑1 (MQ=255)
                                                               tttatatcatcTTGATCTATT‑TTTTTTTTTTTTT‑AT‑CTTAAAAAATAAAAAAAAAA‑AATACCC‑‑TTAAAAATTAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatt                                                      <  2:2504317/123‑1 (MQ=255)
                                                                gTAGATCCTCGTGATCTATT‑TTTTTATTTGTTT‑AT‑CTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAATAAAAAAAA‑AAAAAAA‑TAAAAACAAAAATTATATATTAAAAtgacatatat                                                     >  2:2395253/1‑119 (MQ=255)
                                                                  aGATCCTCGTGATCTATT‑TTTTTATTTGTTT‑AT‑CTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAA‑AAAAAAA‑‑AAAAACAAACTAAATTTATAAAAATACACTATTATAc                                                  >  1:2733835/1‑128 (MQ=255)
                                                                     cacttttgttCTTTT‑TTTTTAATTTTTT‑AT‑ATTAACAAATAACAAAAAAAAAATCCCC‑‑TTAAAAAATAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                 <  2:1831825/119‑1 (MQ=255)
                                                                     actactttttttatt‑tttttattttttT‑AT‑AATAAAAAAAAAAAAAAAAAAAAATCCCCTT‑‑AAAAATTAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                 <  2:387584/117‑1 (MQ=255)
                                                                      actttttattattt‑tttttattttttt‑aT‑ATTAAAAAATAAAAAAAAAAAAATACCC‑TTAAAAATTAAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                 <  1:344062/116‑1 (MQ=255)
                                                                       ctcgttttatATT‑TTTTTTTTTTTTT‑AT‑ATTAACAAAAAAAAAAAAAAAAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                               <  2:3019596/119‑1 (MQ=255)
                                                                       atcttgttttATT‑TTTTTTTTTTTTT‑AT‑ATTAAAAAAAAAAAAAAAAAAAATAACC‑‑TAAAAAAATAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                               <  2:72671/119‑1 (MQ=255)
                                                                        tttttaaaatat‑ttattATTTTTTT‑AA‑ATAAAAAAAAAAAAAAAAAAAAAACCCCTTAAAAATTAAAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                <  2:546740/117‑1 (MQ=255)
                                                                        atgttatatATT‑TTTTTTTTTTTTT‑AT‑ATTAAAAAAAAAAAAAAAAAAAAAACCCTTAAAAATAAAAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                <  2:1512194/120‑1 (MQ=255)
                                                                        actttttttATT‑TTTTTTTTTTTTT‑AT‑TATAAAAAAAAAAAAAAAAAAAAAACCC‑‑ATAAAAAATAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcaca                                              <  2:3041010/120‑1 (MQ=255)
                                                                         tgtgttatATT‑TTTTTATTTGTTT‑AT‑ATTAACAAA‑AAAAAAAAAA‑AATACCC‑‑TTAAAAAATAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                           <  2:2623042/121‑1 (MQ=255)
                                                                          tttttatATT‑TTTTTTTTTTTTT‑AT‑ATTTAAAAAAAAAAAAAAAAAAATACC‑‑ATTAAAAATTAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                            <  2:1936362/122‑1 (MQ=255)
                                                                          tttattatat‑tttttattttttt‑at‑TATAAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                            <  2:1101097/119‑1 (MQ=255)
                                                                          tgttatattt‑ttttttttttttT‑AT‑TTATAAAAATAAAAAATATA‑AATTACC‑‑TTAAAAAATTAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                           <  2:1713310/120‑1 (MQ=255)
                                                                          ggatattATT‑TTTTTTTTTTTTT‑AT‑GATCAAAAAAAAAAAAAAAAAAAACCACAT‑‑‑AAAAATTAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                           <  1:3134443/122‑1 (MQ=255)
                                                                            tttatttt‑ttttttttttttt‑tt‑tttATAAAATAAAAAAAAAAAAATCACC‑TTTAAAAAATAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                           <  2:46182/122‑1 (MQ=255)
                                                                            gtaatATT‑TTTTTATTTGTTT‑AA‑ATTAAAAAAAAAAAAAAAAACAAAACC‑‑ATTAAAAATTAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                          <  2:755283/124‑1 (MQ=255)
                                                                            atgataat‑ttattAATTGTTT‑AT‑ATTAAAAAAAAAAAAAAAAAAAAT‑‑CCTTTTAAAAATAAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                          <  1:1226124/121‑1 (MQ=255)
                                                                             atatatt‑tttttattttttT‑AT‑ATAAAAAAATAAAAAAAAAAAAATAACC‑‑TTAAAAATTAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                         <  2:1454284/125‑1 (MQ=255)
                                                                              taaatt‑tttttattttttt‑AA‑ATT‑AAAAAAAAAAAAAAAAAAAAACCCATTAAAAATTAAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                         <  2:3209572/125‑1 (MQ=255)
                                                                               tattt‑tttttattttttt‑tt‑attAAAAAATAAAAAAAAAAAAATAACC‑‑‑TAAAAAATTAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttattt                                      <  1:734131/125‑1 (MQ=255)
                                                                               caatt‑tttttattttttt‑AT‑ATTAAAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                     <  2:2196565/126‑1 (MQ=255)
                                                                                 ttt‑ttttttttttTAT‑AT‑ATAAAAAAATAAAAAAAAAAAAAAACC‑‑ATTAAAAAATTAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                     <  1:1707966/127‑1 (MQ=255)
                                                                                  tt‑tttttattttttt‑aT‑ATTTAAAAAAAAAAAAAAAAAAATACCC‑‑TTAAAAATTAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                    <  2:1363306/128‑1 (MQ=255)
                                                                                  tt‑tttttattttttt‑aT‑ATTAAAAAAAAAAAAAAAAAAAATCCCCTTT‑‑AAAATTAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                    <  2:2095933/128‑1 (MQ=255)
                                                                                   t‑ttttttttttttt‑AT‑ATTCAAAAAAAAAAAAAAAACAAACCCCTT‑‑‑AAAAATTAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                  <  1:2528358/128‑1 (MQ=255)
                                                                                   t‑ttttttttttttt‑AA‑TTTAAAAAAAAAAAAAAAAAAAATACAC‑TTAAAAATTAAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                    <  1:32803/128‑1 (MQ=255)
                                                                                   t‑tttttattttttt‑at‑TATAAAAAAAAAAAAAAAAAAAAAACCCATT‑‑AAAAATAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                   <  1:2768213/128‑1 (MQ=255)
                                                                                   t‑tttttATTTGTTTAAT‑TTAAAAAAAAAAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                   <  2:910056/128‑1 (MQ=255)
                                                                                   t‑tttttATTTGTTT‑AT‑TTTTACAAAAAAAAAAAAAAAAAACCCC‑TTAAAAATAAAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                    <  1:2211355/128‑1 (MQ=255)
                                                                                   t‑tttttAATTTTTT‑AT‑TATAAAAAATAAAAAAAAAAAAATACCCAT‑‑‑ATAAATTTAAAAAAAAAAAA‑AAAAAAACTAAATACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                  <  1:2569432/128‑1 (MQ=255)
                                                                                     ttttttttttttT‑ATAATTAAAAAAAAAAAAAAAAACACTACCC‑‑AAAAAAAATAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTAAACCACATTTTATTTTTa                                   <  1:2898329/128‑1 (MQ=255)
                                                                                     tttttATATGTTT‑AT‑ATTAACAAAAAAAAAAAAAAAAAATCCCCTT‑‑AAAAAT‑TAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                 <  2:856984/128‑1 (MQ=255)
                                                                                     ttttaATTTTTTT‑AT‑AATAAAAAATAAAAAAAAAAAAAAACAC‑TTAAAAATTAAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                   <  2:3082137/128‑1 (MQ=255)
                                                                                       ttttttttttT‑AT‑ATTTACAAAAAAAAAAAAAAAAAT‑AAAATTAAAAAATAAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                 <  1:772358/128‑1 (MQ=255)
                                                                                         tttattttt‑AT‑ATTAACAAATAAAAAAAAAACAAAACCCAT‑‑‑AAAAATTAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                             <  2:623100/122‑1 (MQ=255)
                                                                                         tATTTTTTT‑AT‑ATTAAAAAAAAAAAAAAAAAAAAAACCC‑‑TTAAAAAATAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                              <  2:175905/128‑1 (MQ=255)
                                                                                          aTTTTTTT‑AT‑TTTAAAAAAAAAAAAAAAAAAAATTCCC‑‑TTAAAAATTAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                             <  2:1550622/128‑1 (MQ=255)
                                                                                            tttttt‑AT‑ATTCAAAAAAAAAAAAAAAACAATCCCC‑‑TTAAAAAATAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                           <  2:3188396/125‑1 (MQ=255)
                                                                                               ttt‑AT‑CTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAA‑AAAAAAA‑TAAAAAAAACCAATATATATTAAAATTCCAAATTATACACCATTTTATTTTTAAAATATGATAtt                       >  2:2928180/1‑128 (MQ=255)
                                                                                                 tttaaattaacaAATAAAAAAAAAACAAT‑ACCATTAAAAATTAAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                         <  2:576697/119‑1 (MQ=255)
                                                                                                 atatatttaaaaaaTAAAAAAAAAA‑AATAACCTAT‑‑AAAAATTAAAAAAAAAAAAA‑AAAAAATCTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                       <  2:2009687/117‑1 (MQ=255)
                                                                                                  tttacttaaaaaaaaaaaaaaaaaaaATCCCAATT‑‑AAAATTAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                       <  1:2744151/118‑1 (MQ=255)
                                                                                                  ttatataaaaaaaaaaaaaaaaaaaaaaACCCTT‑‑‑AAAAATAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                      <  2:2838841/118‑1 (MQ=255)
                                                                                                  ttatataaaaaaaaaaaaaaaaaaaaATACCCTTT‑‑AAAATTAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                       <  2:1014662/118‑1 (MQ=255)
                                                                                                          aaaaaaaaaaaaaaaaaaATCACATTAAAAATTAAAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                 <  2:1481280/126‑1 (MQ=255)
                                                                                                               aaaaaaaaaaaCAAAACCATTT‑‑AAAATTAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata          <  2:123644/127‑1 (MQ=255)
                                                                                                                 aaaaaaaaaCAATACAC‑TTAAAAATTTAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatatat         <  2:2458485/128‑1 (MQ=255)
                                                                                                                       aaaCAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAAAAAAATGTTATAAAATAACGTTTTTTACAAAATTTTTTTTTTAAAAAAAAAAATTGAAataataattttaatatat  >  1:1327813/1‑116 (MQ=255)
                                                                                                                                  |                                                                                                                       
AAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATT‑TTTTTATTTGTTT‑AT‑CTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATAT  >  CP016816/202358‑202603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑