Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,8951.T69.2% 945.8 / inf 422intergenic (+279/+179)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base . (63/66);  new base T (237/53);  total (302/120)
Fisher's exact test for biased strand distribution p-value = 1.94e-11
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 544 total aligned reads displayed.

TTTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATA  >  CP016816/203768‑204021
                                                                                                                                           |                                                                                                                                        
tttAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTg                                                                                                                                           >  2:2506894/1‑128 (MQ=255)
 ttAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTGTCAACATTACAACGCTTTCAAATTGGATTTTTTAGG‑‑C‑‑TGG‑‑‑‑t                                                                                                                                      >  2:1631558/1‑128 (MQ=255)
 ttAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTAGTTTTTAGG‑‑C‑‑gtg‑‑‑‑t                                                                                                                                      >  1:1784822/1‑128 (MQ=255)
  tAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTATCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑‑tt                                                                                                                                     >  2:226249/1‑128 (MQ=255)
   atttttttttATAAAAAAAATAAAAATTTTTATTTTAAAGCCATTTTTAAAAAATCCTTTTTTTTAGGCTTTTTTTTTTACTTATCAAAATTACAACGCTTTCAAAGTTTATTTTTTAGG‑‑C‑‑Ttt‑‑‑‑tttt                                                                                                                                  <  1:1478597/126‑1 (MQ=255)
    aatttttttATAAAAAAAAATAAAAATTTTTAATTTAAATCCATTTGTAAAAAAGCCTATTTTTTATGTTTTTTTTTATAATTATCAAAATTACAACGCTTTCAAATTGTTTTTTTTAGG‑‑C‑‑TTG‑‑‑‑tttt                                                                                                                                  <  1:304430/126‑1 (MQ=255)
     ttttttttATAAAAAAAAATTAAAATTTTTAATTTAAAGCCATTTTTAAAAAAGCCTATTTTTTTGGGTTTTTTTTATACTTATCAACATTACAACGCTTTAAAAGTGTTTTTTTTTGG‑‑C‑‑ttt‑‑‑‑ttttt                                                                                                                                 <  1:1088221/128‑1 (MQ=255)
        tttttATAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑‑ttttttttt                                                                                                                            >  1:936772/1‑128 (MQ=255)
         ttttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑A‑‑TTG‑‑‑‑ttttttttt                                                                                                                            >  2:1366832/1‑128 (MQ=255)
             tataaaaaaaaTAAAAATTTTTCATTTAAAGCCCTTTGTAAAAAAGCCGATGTTCTAGGATTTTTATTATACTTATCATCATTACAACGCTTTCAAAGTGTATTCTTTTGG‑‑C‑‑TTG‑‑‑‑ttttttttttttt                                                                                                                        >  1:2925522/4‑128 (MQ=255)
             ataAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑‑ttttttttttttt                                                                                                                        >  2:1980113/1‑128 (MQ=255)
              taAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑‑tttttttttttttt                                                                                                                       >  1:2743793/1‑128 (MQ=255)
              taAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑‑tttttttttttttt                                                                                                                       >  1:2703499/1‑128 (MQ=255)
               aaaaaaaaaaaaaaATTTTTTATTTTAAATCAATTTTTAAAAAATCATTTGTTATTTTCTTTTTATTTTAATTATCAAATTTAAAACGTTTTTAAATTTTATTTTTTAGG‑‑C‑‑TTG‑‑‑‑tttttttttttttt                                                                                                                       <  1:2350178/128‑1 (MQ=255)
               aaaaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑‑tgttttttttttttt                                                                                                                      >  2:1582565/1‑128 (MQ=255)
                aaaaaaaaTAAAAATTTTTCATTTACAGCCATTTGTAAAAAACCCTATGTTCTATGCTTTTTATTATAATTATCAACATTACAACGCTTTAAAAGTGTATTTTTTAGG‑‑C‑‑TTT‑‑‑‑gttttttttttttttt                                                                                                                     <  2:3033139/128‑1 (MQ=255)
                 aaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTATG‑‑C‑‑TTG‑‑‑‑ttttttttttttttttt                                                                                                                    >  1:395709/1‑127 (MQ=255)
                  aaaaaaTAATAATTTTTCATTTAAAGCCATTTTTAAAAAATGCTATGTTCTAGGCTTTTTATTAAAATTATTAACATTAAAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑Ttt‑‑‑‑tttttttttttttttttg                                                                                                                   <  1:155124/128‑3 (MQ=255)
                   aaaaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTATGCTTTTTATTATACTTATCAACATTACAACGCATTCAAAGTGTATTTTATAGG‑‑C‑‑TTG‑‑‑‑ttttttttttttttttttt                                                                                                                  >  1:518604/1‑125 (MQ=255)
                    aaaataaaaatTTATAATTTAAAGCCAATTTTAAAAAACCCTATTTTCTACGCTTTTTATTATACTTTACAAAATTACAACCCATTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑‑ttttttttttttttttttgt                                                                                                                 <  2:3151555/128‑5 (MQ=255)
                          aaaatTTTTTATTTAAATCCATTTTTAAAAAAGCCTATTTTTTATGCTTTTTTTTATACTTATAAAAAATAAAACCCTTTAAAAGTGTATTTTTTAGG‑‑C‑‑TTGTT‑‑TTTTTTTTTTTTTTTTGTAAAAAt                                                                                                           <  2:3082796/128‑1 (MQ=255)
                          aaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑‑ttttttttttttttttttttttaata                                                                                                           >  1:2995408/1‑118 (MQ=255)
                          aaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑‑tttttttttttttttttttttaaaat                                                                                                           >  2:2090818/1‑118 (MQ=255)
                          aaaaaTTTTAAATTAAATCCATTTTTAAAAAATCCTATGTTCTATGCTTTTTATTATAATTATCAACATTAAAACTCTTTAAAATTGTTTTTTTTATG‑‑CTTTTT‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAAt                                                                                                           <  2:2721337/128‑1 (MQ=255)
                            attttttATTTTAAATCCAATTTTAAAAAATACTTTGTTATAGGTTTTTTATTATAATTATAAAAATTAAAACGATTTAAAAGTGTATTTTTTTGG‑‑C‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATaaa                                                                                                        <  2:919087/126‑1 (MQ=255)
                            aatTTTTTATTTAAATCAATTTGTAAAAAATACTTTGTTCTTTGATTTTTTTTTTAATTATAAAAATTATAAATCTTTCAAATTGTATTTTTTTGG‑‑C‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATaaa                                                                                                        <  2:1318175/128‑1 (MQ=255)
                            aatTTTTAATTTAAATCATTTTTTTAAAATGCCTTTGTTGTATGATTTTTATTTTAATTATATAAATTACAACTTTTTCAAATTTTTTTTTTTATG‑‑T‑‑TTG‑‑‑‑tttttttttttttttttttgtaaaaata                                                                                                         <  1:2456531/128‑13 (MQ=255)
                             atTTTTAATTTAAATCAATTTTTAAAAAAGAGTATTTTCTAGTTTTTTTATTATACTTATCAAAAATACAACTCTTTAAAATTTTATTTTTTTTG‑‑C‑‑TTT‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAg                                                                                                      <  1:2157824/128‑1 (MQ=255)
                              tttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTT‑‑TTTTTTTTTTTTTTTTTTAAAAATaaaa                                                                                                       >  2:51264/1‑128 (MQ=255)
                               ttttTATTTAAAGACATTTGTAAAAAATACTTTTTTTTATGGTTTTTATTATAATTATAAAAATTACAACCCTTTAAAATTGTTTTTTTTAGG‑‑CTTTT‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGt                                                                                                     <  2:780390/128‑1 (MQ=255)
                               ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTT‑‑TTTTTTTTTTTTTTTTTTAAAAATaaaat                                                                                                      >  2:1037981/1‑127 (MQ=255)
                                tttaatttaaATCCATTTTTAAAAAAGCCTATGTTCATTGCTTTTTATTATAATTATCAACATTACCACGCTTTAAAATTGTTTTTTTTTTGGTT‑‑TTT‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGt                                                                                                     <  2:2640749/128‑1 (MQ=255)
                                tttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTTTTTAaaaaaaaactta                                                                                                   >  1:282482/1‑124 (MQ=255)
                                 ttaaTTTAACGCCATTTGTAAAAAAGCCTATGTGCTAGGCTTTTTATTTTACTTTTCAACATTACACCGCTTTTAAATGGTATTTTTTTGG‑‑G‑‑TTGTT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTa                                                                                                    <  1:3180700/125‑1 (MQ=255)
                                      tttAAAGCCATTTGTAAAAAAGCCTATGATCTAGGCTTTTTATTAAACTTATCAACATTACAACGCATTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑‑TTTATTATTTTTTTTTTTGTAAAAATAAAAGAAAGAt                                                                                               >  1:2607429/1‑128 (MQ=255)
                                         aaaGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTGTAAAAAATAAAATAATAttttt                                                                                           >  2:408281/1‑126 (MQ=255)
                                         aaaCCCATTTTTAAAACAGCGTTTGTTATTTGCTTTTTATTATAATTATCAAAATTAAAAAGGTTTCAAAGTGGTTTTTTTAGG‑‑C‑‑TTGTTTTTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGAttt                                                                                             <  2:2389995/128‑1 (MQ=255)
                                          aaGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAATATTTTGAt                                                                                         >  2:1786663/1‑128 (MQ=255)
                                           tgCCATTTTTAAAAAATCCTATGTTATTGGCTTTTTATTTTACTAATAAACATTAAAACGCTTTCAATTTGTATTTTTTTTGTTT‑‑TTT‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGa                                                                                          <  1:2797453/127‑1 (MQ=255)
                                               aTTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAATTAAAAtttttaaaaaa                                                                                     >  2:856992/1‑120 (MQ=255)
                                                     aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTTTTTTTTTTTTTTTTTTTGTAAAAATAAAAGTAATTTTTTGAACaagaaaa                                                                                >  1:1614087/1‑123 (MQ=255)
                                                     aaaaaaGACTATTGTGTAGGTTTTTTTTTATAATTATAAAAATATACACGATATCAAAGTTTATTTTTTAGG‑‑C‑‑TTGTT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCaaaa                                                                               <  2:1656276/128‑1 (MQ=255)
                                                      aaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAATGTATTATTTTGAAAAACCaaaaa                                                                              >  2:1226057/1‑127 (MQ=255)
                                                      aaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTTTTGATAAAAAAAAAGAAAAATTTTGATCAACCaaaaa                                                                              >  2:2814818/1‑127 (MQ=255)
                                                       aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTT‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAATTATGATTTGGAAAACCaaaaaaa                                                                            >  2:2981845/1‑125 (MQ=255)
                                                       aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAAGTAATTTTTTGATAAACCAAAACta                                                                            >  1:363085/1‑128 (MQ=255)
                                                        aaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTT‑‑TTTTTTTTTTTTTTTTGTTAATATATAATTAATATTTGGTTAAAACaaaaaaa                                                                            >  2:2688086/1‑125 (MQ=255)
                                                         aaGCCTATGTTATATGCTTTTTATTTTACTTATTAACATTAAAACGCTTTCAAATTGTTTTTTTTTGG‑‑C‑‑TTGTT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACtat                                                                           <  2:2655755/128‑1 (MQ=255)
                                                              tagaacatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAATATTTCTTGAAACCAAAACTATATCaa                                                                      >  2:2527236/8‑128 (MQ=255)
                                                                ttttctttgtttttttttATACTTTTCAAAAATAAAACCCTTTAAAATTTTATTTTTTAGG‑‑G‑‑TTGTTTTTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCaaa                                                                     <  1:3133757/118‑1 (MQ=255)
                                                                 gTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTT‑‑TTTTTTTTTTTTTTTTGTTAAAATAAAAGTAAGATTTGGTTGAACCAAAAACTTATCaaaaa                                                                   >  2:2590460/1‑128 (MQ=255)
                                                                  ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTTTTTTTTTTTTTTTTTTTGTAAAAATAAATATAAAATTTTGATAAACCAAAATTAATAaaaaaa                                                                  >  2:1542133/1‑128 (MQ=255)
                                                                   catAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGT‑‑C‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAATAATAATATTAAATTTTGTAAAAACCAAAAATAATaaaaaaaaat                                                               >  2:1693815/3‑126 (MQ=255)
                                                                   catAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑‑TTTTTTTTTTTTTT‑‑‑TAAAAATAAAAGTAATATTTTGAAAAACAAAAATTATAAAAAAAAAAATaaa                                                           >  1:645062/3‑128 (MQ=255)
                                                                      aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAAATTTTGTTTAAACCAAAAAAATATCAAAAAAAATa                                                             >  1:810827/1‑128 (MQ=255)
                                                                      aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAATTAAGTTTTGGTTAAACCAAAAGATTTTAAAAAAAATTaaa                                                           >  2:2613898/1‑128 (MQ=255)
                                                                           ttttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAAAATTTGTATCAACCAAAAAAATATAAAAAAAATTaaaaaa                                                        >  1:2865017/1‑128 (MQ=255)
                                                                            tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTTTTAAAAAATAAAATTAAAATTTGTATCAACCAAAACAAAAAAAAAAAAATGaaaaaaaa                                                      >  1:2632373/1‑128 (MQ=255)
                                                                               attatAATTATCAAAATAACAACGCTTTCAAATTTTATTTTTTATGG‑‑G‑‑TGTT‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAAta                                                    <  1:2519003/128‑1 (MQ=255)
                                                                                ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTTTTTTTTTTTTTTTTTTTTTAAAAATAAAAATAAAATTTTGATAAACCAAAAAAATAtaaaaaaaattaaaaaaaatt                                                    >  2:936073/1‑127 (MQ=255)
                                                                                ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAATATTTGTAAAAAACAAAAATATATAAAAAAAATTAAAAAAAAtat                                                   >  2:2035525/1‑127 (MQ=255)
                                                                                ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTT‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAATTAAAATTTTTTTAAAACAAAAATAAAAAAAAAAAATTAAAAAAAAtat                                                   >  2:1720759/1‑127 (MQ=255)
                                                                                 tataCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTTTTTTTTTTTTTTTTTTTTTAAAAATAAAAGTAATATTTTGATAAACCAAAACTATATCAAAAAAATTaaaaaaaaata                                                   >  2:2909878/1‑125 (MQ=255)
                                                                                   taCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTT‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAAAAAAAATTTTGAAAAAACAAAAACTAAAAAAAAAAAATTAAAAAAAAtattt                                                 >  2:714739/1‑128 (MQ=255)
                                                                                    aCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAATTTAATATTTTGTTAAAAAAAAAATATATAAAAAAAATTAAAAAAAAaattttt                                               >  2:1850445/1‑127 (MQ=255)
                                                                                     cTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTTTTTTTTTTTTTTTTTTTTTAAAAATAAAAATAATTTTTTGAAAAAACAAAAAAAATAAAAAAAAATTaaaaaaaaaatttaa                                               >  1:3094788/1‑121 (MQ=255)
                                                                                     cTTATCAACATTACAACGCTTTCAAAGTGTATTTTATAGG‑‑C‑‑TTGTTTTTTTTTTTTTTTTTTTGTAAAAATAAAATTAAGTTTTGGATCAACCAACACTATTTAAAAAAAATTAAAAAAAAtatttat                                               >  1:2482832/1‑126 (MQ=255)
                                                                                        aTCAACATTACAACGCTTTCAAAGTATATTTTTTAGG‑‑C‑‑TTGTT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAATATTTTGTTAAAACAAAACTATATAAAAAAAAATAAAAAAAAtattttagttt                                           >  2:353584/1‑127 (MQ=255)
                                                                                         tCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTT‑‑TTTTTTTTTTTTTTTTTTTAAAAAAAAATTATGATTTGGATAAACCAAAACTATAAAAAAAAAAATAAAAAAAAtagtttatatta                                          >  2:569022/1‑123 (MQ=255)
                                                                                         tCAAAATTACAACGGTTTAAAAGTGTATTTTTTTGGG‑‑T‑‑TTT‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAg                                         <  1:2758364/128‑1 (MQ=255)
                                                                                          cAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTTTTGAAAAAAAAAATTTAAATTTTTAAAACACCAAAAATAATTAAAAAAATTTAAAAAAAAttatttatttatg                                         >  2:2871028/1‑125 (MQ=255)
                                                                                           aaCATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTTATTTTTTGATAAACAAAAAATATATAAAAAAAATTAAAAAAATTATTTTATTTGatt                                        >  2:627610/1‑126 (MQ=255)
                                                                                            aCATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAAAATTTGGATAAACCAAAAATATAAAAAAAAAATTAAAAAAAAtattttattttattt                                       >  2:1160918/1‑123 (MQ=255)
                                                                                               ttACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAAATTATATTTTGATAAACAAAAAATATATAAAAAAAATTAAAAAAAAATTTTTAATTGATTTTaaa                                   >  2:2202522/1‑128 (MQ=255)
                                                                                                  taaaCGTTTTTAAATTGTTTTTTTTTGGG‑‑T‑‑TTT‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAAt                                 <  1:2037904/126‑1 (MQ=255)
                                                                                                  aataCGCTTTCAAATTGTATTTTTTTGTG‑‑T‑‑TTT‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAAt                                 <  1:1709105/125‑1 (MQ=255)
                                                                                                   taaatattttAAAGTGTTTTTTTTTGG‑‑T‑‑TTGTT‑‑TTTTTTTTTTTTTTTTGTAAAAAAAATAGTAATATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAAt                                 <  1:2669622/122‑1 (MQ=255)
                                                                                                   cAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTTTTTTTTTTTTTTTTTTTTTAAAAAAAAAAGTTAATTTTTTTTAAACAAAAAAAAAAAAAAAAAAATTAAAAAAAAAATTTTATTTGATTTTaaaa                                  >  1:870046/1‑128 (MQ=255)
                                                                                                     aCGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAAAATTTTGAACAACAAAAAATATATAAAAAAAATTAAAAAAAAAATTTTATTTTATTTTAAAAACt                               >  2:24792/1‑128 (MQ=255)
                                                                                                     aCGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTTAAAATAAAATTTATTTTTTGAAAAACAAAAACATTATAAAAAAAAATTAAAAAAATATTTTATTTGTTTTTaaaaaatg                              >  1:101139/1‑124 (MQ=255)
                                                                                                     aCGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAATATTTGGATCAACCAAAAAATTATAAAAAAAATTAAAAAAAAAAGTTTTTTTGAATTTAAAATATg                              >  1:1316306/1‑128 (MQ=255)
                                                                                                     aCGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAATTAAAATTTGGAACAACAAAAAATTATAAAAAAAATTAAAAAAAAAAATTTTAGTTGATGTTAAAATATg                              >  2:3169364/1‑128 (MQ=255)
                                                                                                      cGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTTTTTTTTTTTTTTTTTTTTTAAAAATAAAATTAAAATTTGTATAAACCAAAAATATATAAAAAAAATTAAAAAAAATTTTTTATTTAATTTTaaaaaat                               >  2:1935321/1‑125 (MQ=255)
                                                                                                         tttCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTTTTTTTTTTTTTTTTTTTTTTAAAAATAAAATTAAAATTTTGTTAAAAAAAAAATATAAAAAAAAAAATAAAAAAAATAATTTATTTTAATTTAAAAtatag                             >  1:1136345/1‑124 (MQ=255)
                                                                                                         tttCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAAAAAAAATAAGATTTGGATACACCAAAAAAATATAAAAAAAAATAAAAAAAAAATTTTAATTGATGTTCATATCTgaaaat                         >  1:2978247/1‑123 (MQ=255)
                                                                                                          ttCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTTTTTTTTTTTTTTTTTTTTTAAAAATAAAATTTAAATTTGTAAAACAAAAAAATAATAAAAAAAAATTAAAAAAAATAGTTAATTTTATTTTaaaaatttaat                           >  2:2559028/1‑121 (MQ=255)
                                                                                                          ttCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTTTTTTTTTTTTTTTTTTTTTAAAAATAAAAGAAAAATTTGGAACACCCAAAACTATATCAAAAAAATTAAAAAAAAATTTTAATTAATTTTCAAATCTTCata                          >  2:2456211/1‑128 (MQ=255)
                                                                                                           tCAAAGTGTATTTTTTAGG‑‑C‑‑TTGTT‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAATTAATATTTGGATCAACAAAAAAATTATCAAAAAAATTAAAAAAAAAATTTTATTTGAATTTAAAATATgaaata                         >  2:454064/1‑123 (MQ=255)
                                                                                                            cAAAGTGTATTTTTTAGG‑‑C‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTGTAAAAAAAAAAGTAAGATTTGGATTAACCAAAACTATATAAAAAAAATTAAAAAAAATATTTTAGTTTAGTTTAAAATATGCatatat                       >  2:1014587/1‑128 (MQ=255)
                                                                                                             tttattttttttttttTGC‑‑T‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATAAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCatatat                       <  2:2763333/118‑1 (MQ=255)
                                                                                                             aaaGTGTATTTTTTAGG‑‑C‑‑TTGTTTTTTTTTTTTTTTTTTTGTAAAAATAAAAGTAATTTTTGGTACAACAAAAAATATATAAAAAAAATTAAAAAAAATATTTTTTTTGATTGTCaaaatgcaataat                        >  2:1398126/1‑118 (MQ=255)
                                                                                                             aaaGTGTATTTTTTAGG‑‑C‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAAGATTTGGAAAAACAAAAACTAATACAAAAAAATTAAAAAAAAAATTTTATTTTATTTTAAAAAATGAAtatata                      >  2:2311545/1‑128 (MQ=255)
                                                                                                              aaGTGTATTTTTTAGG‑‑C‑‑TTGTT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAAAATTTTTATAAAAAAAAAAAAATAAAAAAAAATTAAAAAAAAAATTTTATTTTATTTTAAAAAATGCAtatata                      >  1:1223576/1‑128 (MQ=255)
                                                                                                                    tATTTTTTAGG‑‑C‑‑TTGTT‑‑TTTTTTTTTTTTTTTTGTAAAAAAAAAAATAACATTTGGAACAACCAAAACATTATAAAAAAAATATAAAAAAATAGTTTATTTGTCTTTAAAATATGAaaataaataaca                 >  1:33435/1‑121 (MQ=255)
                                                                                                                     aTTTTTTAGG‑‑C‑‑TTGTT‑‑TTTTTTTTTTTTTTTTGTAAAAAAAAAATTAATATTTGTATCACCCAAAAATTTAAAAAAAAAATTAAAAAAAAAGTTAATATTAGTTTAAATTATGCATATATAGAACaat               >  1:2884315/1‑127 (MQ=255)
                                                                                                                       ttttttAGG‑‑C‑‑TTGTTTTTTTTTTTTTTTTTTTTTAAAAATAAAATTAATATTTGGATAAAACAAAACTATTAAAAAAAAATTAAAAAAAATATTTTTGTTTTGTTTAAAATATGCattttatttaaaa                >  1:3077109/1‑117 (MQ=255)
                                                                                                                       ttttttAGG‑‑C‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAAAAAAAGAAAGATTTCTAACAACCAAAACTAAAACAAAAAAAATAAAAAAAAATATTAATTTGAGATTAAAAACTGCAATTTTTTTACAAAgg             >  1:2425183/1‑128 (MQ=255)
                                                                                                                          tttAGG‑‑C‑‑TTGTT‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAAGTAAGTTTTTTATAAACCAAAAATATAAAAAAAAAATTAAAAAAATAAATTTATTTTATTTTCAAAAAAGAATATATATTAaaaaata            >  2:1472986/1‑125 (MQ=255)
                                                                                                                          tttAGG‑‑C‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAATATTTTGAAAAAACAAAAATATAAAAAAAAAATTAAAAAAAAAATTTTAATATCTTTTAAAATAAGAATATATAGTAaaaaatca           >  1:2541324/1‑124 (MQ=255)
                                                                                                                                 g‑‑C‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTTTATCAAAAAAATTAAAAAAAAAAGTTTAGTTGAGTTTCAAATCTGCTTTTAAAGTACAAAGTAAttttt      >  2:1079598/1‑126 (MQ=255)
                                                                                                                                           |                                                                                                                                        
TTTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATA  >  CP016816/203768‑204021

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: