Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,9120GT41.9% 528.7 / 205.7 524intergenic (+296/+162)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base G (83/215);  new base T (215/0);  total (309/215)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 558 total aligned reads displayed.

AAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTG‑‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATAT‑CAAAAAAAT‑T‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTT  >  CP016816/203786‑204039
                                                                                                                                                    |                                                                                                                                  
      aaaaaatTTTTTATTTAAATCCCTTTGTAAAAAATCCAATTTTTTATGTTTTTTATTATACTTATAAACATTAAAACGGTTTA‑AAAGTG‑TA‑TTTTTTTGG‑‑‑C‑‑‑‑TTGT‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGTaaaaa                                                                                                                              <  1:2720758/127‑1 (MQ=255)
       aaaaatTTTTCATTTAAAGCCATTTGTAAAATAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTG‑‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTT‑TAAAAAtta                                                                                                                           >  2:519032/1‑126 (MQ=255)
        aaaatTTTTTAATTAAATCAATTTTTAAAAAACCCTATTTTATATGTTTTTTATTATTATTATAAACATTAAAAATCTTTC‑AAATTG‑TA‑TTTTTTATG‑‑‑CTT‑‑TTT‑‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGTAAAAAt                                                                                                                             <  2:1770264/128‑1 (MQ=255)
        aaaatTTTTAATTTAAATCCATTTTTAAAAAATCTTTTTTTTTATTCTTTTTTTTTTAATTATAAAAATTACAACCCTTTA‑AAATTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTT‑‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGTAAAAATaa                                                                                                                           <  2:2570775/128‑1 (MQ=255)
        aaaaaTTTTAAATTAAATCCATTTTTAAAAAATCCTATGTTCTATGCTTTTTATTATAATTATCAACATTAAAACTCTTTA‑AAATTG‑TT‑TTTTTTATG‑‑‑CTT‑‑TTT‑‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGTAAAAAt                                                                                                                             <  2:2721337/128‑1 (MQ=255)
         aatttttttttttAAATCAATTTTTAAAAAATACTATGTTTTATTCTTTTTATTATAATTATTAAAAATAAAACGCTTTA‑AAATTG‑TT‑TTTTTTTGGTT‑T‑‑‑‑TTT‑‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGTAAAAATa                                                                                                                            <  1:1605825/125‑1 (MQ=255)
             ttttCATTTAAAGCCATTTGTAAAAAATCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTG‑‑‑‑TTATT‑T‑T‑TT‑‑‑TTTTTTTTTTTaaaaaaaaaat                                                                                                                        >  2:1369928/1‑127 (MQ=255)
             ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACTCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGA‑‑‑T‑‑TT‑TGT‑TT‑‑‑TTTTTTTTTGTAAAAATaaaat                                                                                                                        >  2:2088973/1‑127 (MQ=255)
             ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTG‑‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTTTTTaaaaaaaaaat                                                                                                                      >  2:2671137/1‑125 (MQ=255)
              ttttattttaAGTCATTTTTAAAAATGAATAATTTATAGGTTTTTTATTATATTTATCAACATTTCAACTGTTTC‑AATGTT‑TA‑TTTTTTTGG‑‑‑C‑‑‑‑TTGT‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGTAAAAATAAAAGTa                                                                                                                      <  1:1142399/128‑1 (MQ=255)
              tttaatttaaATCCATTTTTAAAAAAGCCTATGTTCATTGCTTTTTATTATAATTATCAACATTACCACGCTTTA‑AAATTGTTT‑TTTTTTTGGT‑‑T‑‑‑‑TTT‑‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGTAAAAATAAAAGt                                                                                                                       <  2:2640749/128‑1 (MQ=255)
                   tttAAAGCCATTTGTAAAAAAGCCTATGATCTAGGCTTTTTATTAAACTTATCAACATTACAACGCATTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTG‑‑‑‑T‑‑TTAT‑TATT‑‑‑TTTTTTTTTGTAAAAATAAAAGAAAGAt                                                                                                                  >  1:2607429/1‑128 (MQ=255)
                     tAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGT‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTTTAAAAATAAAATTAATAtttt                                                                                                               >  2:481060/1‑127 (MQ=255)
                      aaaGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGT‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGTAAAAAATAAAATAATAttttt                                                                                                              >  2:408281/1‑126 (MQ=255)
                      aaaGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTG‑‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTATTTaaaaaaaaaattaatatatg                                                                                                             >  2:224181/1‑116 (MQ=255)
                        attcATTTTTAAAAAAGACTATTTTTTATTCTTTTTATTATAATTATAAAAATTAAAACTCTTTC‑AAATTT‑TA‑TTTTTTTGG‑‑‑C‑‑‑‑TTT‑‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATc                                                                                                           <  2:1058358/125‑1 (MQ=255)
                         gCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGTT‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGTAAAAAAAAAATTAATAttttata                                                                                                            >  1:2921852/1‑124 (MQ=255)
                           cttttGTAAAAAATGATTTTTTTTAGTGTTTTTTTTATAATTAACAAAATTAAAAGGTTTTC‑AAATTG‑TA‑TTTTTTTGT‑‑‑C‑‑‑‑TTG‑‑‑‑‑‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAAcc                                                                                                       <  1:1748693/126‑1 (MQ=255)
                                 tAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGTT‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTTTAAAAAAAAAATTAATATTTTGATAAACCaaa                                                                                                    >  1:1319499/1‑128 (MQ=255)
                                 tAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTG‑‑‑‑T‑‑TT‑T‑T‑TTTTATTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCaa                                                                                                     >  1:2632966/1‑128 (MQ=255)
                                  aaaaaaTCTTATGTTATATTATTTTTTTTATAATTATAAACATTTCAACGCTTTC‑AAATTT‑TT‑TTTTTTATG‑‑‑CTT‑‑TTT‑‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCaaaa                                                                                                   <  2:3149888/128‑1 (MQ=255)
                                  aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTC‑AATGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGT‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGTTAAAATAAATATAATATTTGGATAAACAaaaaa                                                                                                  >  1:3011426/1‑127 (MQ=255)
                                  aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGTTTTT‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGTAAAAATAAAATTAAGATTTGGATAAACCaa                                                                                                     >  2:1903415/1‑128 (MQ=255)
                                    aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGTT‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGTAAAAATAAAATTAAGATTTGGTAAAACCaaaaat                                                                                                 >  2:2965873/1‑126 (MQ=255)
                                      aaGCCTATGTTATATGCTTTTTATTTTACTTATTAACATTAAAACGCTTTC‑AAATTG‑TT‑TTTTTTTGG‑‑‑C‑‑‑‑TTGTT‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACtat                                                                                               <  2:2655755/128‑1 (MQ=255)
                                       agcatttGTTCTAGGCTTTTTATTTTAATTATAAAAATTAAAACGCTTTC‑AAATTG‑TT‑TTTTTTTGG‑‑‑C‑‑‑‑TTG‑‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATAT‑c                                                                                           <  1:831114/122‑1 (MQ=255)
                                          cTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGTT‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTTTAAAAAAAAAATTAAAATTTGATAAAACAAAAACTatataa                                                                                           >  1:332140/1‑126 (MQ=255)
                                           tATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTG‑‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTTTAAAAATAAAATTAAGATTTGGATACAAAAAAACTATAT‑Caaaa                                                                                       >  2:1623214/1‑128 (MQ=255)
                                              gTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGTT‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTTTAAAAATAAAATATATATTTGTAAAAACCAAAAAAAAAA‑Caaaaa                                                                                      >  1:3068717/1‑128 (MQ=255)
                                               ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGTTT‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGTAAAAATAAATATAAAATTTTGATAAACCAAAATTA‑AT‑Aaaaaaa                                                                                     >  2:1542133/1‑128 (MQ=255)
                                               ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGTT‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGTAAAAATAAAATTAATATTTTGATAAAACAAAACTATAT‑Caaaaaa                                                                                     >  2:1295582/1‑128 (MQ=255)
                                               ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGA‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTTTAAAAATAAAATTAATATTTGTAAAAAACAAAAATATTT‑aaaaaaaa                                                                                    >  2:331429/1‑128 (MQ=255)
                                                catAGGCTTTTTATTATACTTATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGT‑‑‑C‑‑‑‑TTGT‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTTTAATAATAATATTAAATTTTGTAAAAACCAAAAATA‑AT‑aaaaaaaaat                                                                                  >  2:1693815/3‑126 (MQ=255)
                                                catAGGCTTTTTATTATACTTATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGT‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGTAAAATTAAATTTAATTTTTGGATAAACGAAAAATA‑AT‑aaaaaaaaaa                                                                                  >  2:690790/3‑126 (MQ=255)
                                                catAGGCTTTTTATTATACTTATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTG‑‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTT‑‑‑TAAAAATAAAAGTAATATTTTGAAAAACAAAAATTATAA‑AAAAAAAAA‑T‑aaa                                                                             >  1:645062/3‑128 (MQ=255)
                                                 cTAGGCTTTTTATTATACTTATCAACATTACAACTCTTTC‑AAAGTG‑TA‑TTTTTTATT‑‑‑CTTTTTTT‑‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGTAAAAAAAAAATTAACATTTTTATAAAAAAAAACAATTT‑Aaaaaaa                                                                                     >  2:2620452/1‑128 (MQ=255)
                                                 cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTG‑‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTTTAAAAATAAAAATAATATTTTGTTAAAACAAAACATTAT‑AAAAAAAAT‑T‑a                                                                               >  1:369827/1‑128 (MQ=255)
                                                   aGGCTTTTTATTATACTTATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGTT‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTTTAAAAATAAAAATAAGATTTGGATCAACCAAAAAAATAA‑AAAAAAAAT‑T‑a                                                                               >  1:2476205/1‑128 (MQ=255)
                                                      cTTTTTATTTTAATTATAAAAATTACAACTCTTTA‑AAATTG‑TATTTTTTTTGGTTTT‑‑‑‑TTT‑‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATAT‑CAAAAAAAT‑T‑aa                                                                              <  2:2595183/128‑1 (MQ=255)
                                                      cTTTTTATTATACTTATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGTT‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGTTAAAAATAAATTAATATTTTGATCAACAAAAAATATTA‑AAAAAAAAT‑T‑aaaa                                                                            >  1:199458/1‑128 (MQ=255)
                                                       tttttATTATACTTATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGTTT‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTTTAAAAAAAAAATTAATATTTTTATAAAAAAAAAAAATAT‑AAAAAAAAT‑T‑aaaa                                                                            >  2:1962158/1‑128 (MQ=255)
                                                       tttttATTATACTTATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGTT‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTTTAAAAATAAAAGTAAAATTTTGATCCACCAAAACAAATA‑AAAAAAAAA‑T‑aaaaa                                                                           >  1:2856866/1‑128 (MQ=255)
                                                        ttttttTATAATTATTAAAATTAAAACTGTTTT‑AATTTT‑TT‑TTTTTTTTG‑‑‑C‑‑‑‑TTGTT‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATAT‑CAAAAAAAT‑T‑aaaaaa                                                                          <  1:1094492/128‑1 (MQ=255)
                                                        ttttATTATACTTATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGTTT‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTTTAAAAATAAAATTAATATTTGGATAAACCAAAACTATAA‑AAAAAAATT‑T‑aaaaa                                                                           >  2:2871961/1‑128 (MQ=255)
                                                        ttttATTATACTTATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGTT‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTTTAAAAATAAAATTAAAATTTGGAAAAACAAAAAAAATTA‑CAAAAAAAT‑T‑aaaaaa                                                                          >  1:2542216/1‑128 (MQ=255)
                                                         tttATTATACTTATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGTT‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTTTAAAAATAAAATTAATATTTGTTAAAACCAAAAATATAT‑AAAAAAAAT‑T‑aaaaaat                                                                         >  2:1594228/1‑127 (MQ=255)
                                                            attatACTTATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTG‑‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTTTAAAAATAAAAGTAATATTTGGAAAAACCAAAACTATAT‑AAaaaaaaa‑t‑aaaaaaaatatt                                                                    >  1:1524402/1‑126 (MQ=255)
                                                             ttatACTTATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGTTT‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTTTAAAAATAAAAATAAAATTTTGATAAACCAAAAAAATAt‑aaaaaaaat‑t‑aaaaaaaatt                                                                      >  2:936073/1‑127 (MQ=255)
                                                             ttatACTTATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGTT‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTTTAAAAATAAAATTAATATTTGTAAAAAACAAAAATATAT‑AAAAAAAAT‑T‑AAAAAAAAtat                                                                     >  2:2035525/1‑127 (MQ=255)
                                                             ttatACTTATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGTT‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTTTAAAAAAAAAATTAAAATTTTTTTAAAACAAAAATAAAA‑AAAAAAAAT‑T‑AAAAAAAAtat                                                                     >  2:1720759/1‑127 (MQ=255)
                                                              tataCTTATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGTTT‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTTTAAAAATAAAAGTAATATTTTGATAAACCAAAACTATAT‑CAAAAAAAT‑T‑aaaaaaaaata                                                                     >  2:2909878/1‑125 (MQ=255)
                                                                taCTTATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGT‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTATAAAAATAAAAAAAAAATTTTGATAAACCAAAACTAAat‑aaaaaaaaa‑t‑aaaaaaaaaaattaa                                                                 >  1:42730/1‑121 (MQ=255)
                                                                  tttATC‑ACATTACCACGGTTTCTAATTTG‑TT‑TTTTTTGGG‑‑‑G‑‑‑‑TGGT‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATAT‑CAAAAAAAT‑T‑AAAAAAAAtagtttagt                                                               <  1:2790219/127‑1 (MQ=255)
                                                                   ttATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGTT‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTTTAAAAATTAAATTAAGATTTGGATCAACCAAAAATTTTT‑AAAAAAAAT‑A‑aaaaaaaaaatattaat                                                               >  1:2513777/1‑119 (MQ=255)
                                                                   ttATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGTT‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTTTAAAAAAAAAATTAATTTTTTGATAAACCAAAAAAATAT‑AAAAAAAAT‑T‑TAAAAAAAtattttatt                                                               >  2:102186/1‑126 (MQ=255)
                                                                    tttCAACATTAAAACGCTTTT‑AAATTG‑GT‑TTTTTTTGG‑‑‑C‑‑‑‑TTGGT‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATAT‑CAAAAAAAT‑T‑AAAAAAAAtagtttagtt                                                              <  1:2695993/126‑1 (MQ=255)
                                                                     aTCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGTT‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTTTAAAAATAAAATTATTATTTGTATAAACCAAAAAAATATAAAAAAAAAT‑T‑aaaaaaaaattttttttt                                                              >  1:2884054/1‑118 (MQ=255)
                                                                      tCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGT‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTTTAAAAATAAAATTAAGATTTGGTTAAACCAAAAATTTAT‑AAAAAAAAT‑A‑AAAAAAAATAGTATAGTTTAg                                                           >  2:625398/1‑128 (MQ=255)
                                                                      tCAAAATTACAACGGTTTA‑AAAGTG‑TATTTTTTTGGG‑‑‑T‑‑‑‑TTT‑‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATAT‑CAAAAAAAT‑T‑AAAAAAAATAGTTTAGTTGAg                                                           <  1:2758364/128‑1 (MQ=255)
                                                                          cATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGTT‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGTTAAAATAAAAGTAAGATTTTTATCAACCAAAACAATAT‑AAAAAAAAT‑T‑AAAAAAAAtattttattttattta                                                        >  1:2819760/1‑122 (MQ=255)
                                                                               cAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGTT‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGAAAAAAAAAAAGTAATATTTTGATCAACAAAAAATATTT‑CAAAAAAAT‑A‑TAAAAAAATAGTTTAGTTgtttgtcataa                                                   >  2:2831762/1‑118 (MQ=255)
                                                                                 aCGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGTT‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTTTAAAAATAAAATTAAAATTTTGAACAACAAAAAATATAT‑AAAAAAAAT‑T‑AAAAAAAAAATTTTATTTTATTTTAAAAACt                                                 >  2:24792/1‑128 (MQ=255)
                                                                                 aCGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGT‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTTTTAAAATAAAATTTATTTTTTGAAAAACAAAAACATTAT‑AAAAAAAAA‑T‑TAAAAAAATATTTTATTTGTTTTTaaaaaatg                                                >  1:101139/1‑124 (MQ=255)
                                                                                 aCGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGT‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGTAAAAATAAAATTAAAATTTGGAACAACAAAAAAT‑TAT‑AAAAAAAAT‑TAAAAAAAAAAATTTTAGTTGATGTTAAAATATg                                                >  2:3169364/1‑128 (MQ=255)
                                                                                    cTTTC‑AAAGTG‑TA‑TTTTTTAAG‑‑‑C‑‑‑‑TTGT‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTTTAAAAATAAAATTAATATTTTTTACAAACAAAA‑AAAAT‑AAAAAAAATAA‑AAAAAAAATTATTTTGTTGATTTTCAAATATgaaa                                             >  2:1823505/1‑125 (MQ=255)
                                                                                     tttC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGTTT‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTTTAAAAATAAAAGTAAATTTTGGATCAACCAAAAAAATAT‑AAAAAAAAT‑T‑AAAAAAAAAAATTTATTTTATTTTCAAAtataca                                              >  1:3153185/1‑123 (MQ=255)
                                                                                     tttC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGTT‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTTTAAAAAAAAAATTAATATTTGTATCAACCAAAAATAAAA‑AAAAAAAAT‑T‑AAAAAAAATATTTTATTTTATTTTAAAATATgaaa                                             >  2:763282/1‑125 (MQ=255)
                                                                                     tttC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTG‑‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGTAAAAAAAAAAATAAGATTTGGATACACCAAAAAAATAT‑AAAAAAAAA‑T‑AAAAAAAAAATTTTAATTGATGTTCATATCTgaaaat                                           >  1:2978247/1‑123 (MQ=255)
                                                                                      ttC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGTTT‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTTTAAAAATAAAAGAAAAATTTGGAACACCCAAAACTATAT‑CAAAAAAAT‑T‑AAAAAAAA‑ATTTTAATTAATTTTCAAATCTTCata                                            >  2:2456211/1‑128 (MQ=255)
                                                                                          aaaGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGT‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTTTAAAAATAAAATTAAGATTTGGAAAAACAAAAACTAATA‑CAAAAAAAT‑T‑AAAAAAAAAATTTTATTTTATTTTAAAAAATGAAtatata                                        >  2:2311545/1‑128 (MQ=255)
                                                                                               g‑tA‑TTTTTTTTG‑‑‑C‑‑‑‑TTT‑‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGTAAAAATAAAAGTAATATTTGGATCAACCAAAACTATAT‑CAAAAAAAT‑T‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACaa                                  <  2:361796/128‑1 (MQ=255)
                                                                                               g‑tA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGTTT‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTTTAAAAATAAAATTAAAATTTTGAAAAACAAAAAAATTAT‑AAAAAAAAT‑A‑AAAAAAAATATTTTTTTTTAGTTTAAAAAGTGAatattattaa                                     >  2:2497999/1‑122 (MQ=255)
                                                                                               g‑tA‑TTTTTTAGG‑‑‑C‑‑‑‑TTGTT‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTTTAAAAAAAAAATTAAAATTTGGAAAAACAAAAAAAATAA‑CAAAAAAAT‑T‑AAAAAAAATATTTTATTTAAGTTTCAAAAATTCATATATATTaa                                    >  1:3095592/1‑127 (MQ=255)
                                                                                                    ttttttAGG‑‑‑C‑‑‑‑TTG‑‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGTAAAAAAAAAAGAAAGATTTCTAACAACCAAAACTAAAA‑CAAAAAAAA‑T‑AAAAAAAAATATTAATTTGAGATTAAAAACTGCAATTTTTTTACAAAgg                               >  1:2425183/1‑128 (MQ=255)
                                                                                                      ttttAGG‑‑‑C‑‑‑‑TTGTT‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGTAAAAATAAAAGTAAAATTTTGATAAACCAAAACTATAT‑AAAAAAAAT‑T‑AAAAAAAAAAGTTTTTTTTAGTTTCAAATCTGAATATAAATTAAAAAga                               >  2:3082542/1‑127 (MQ=255)
                                                                                                      ttttAGG‑‑‑C‑‑‑‑TTGTT‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGTAAAAAAAAAATTAATATTTGGAGAAACCAAAACTTTAT‑AAAAAAAAT‑T‑AAAAAAAAAATTTTTTTTGAATATCAAAAATGCAAAAAAACTACAAAgc                               >  2:1447416/1‑127 (MQ=255)
                                                                                                                   gtttG‑‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATAT‑CAAAAAAAT‑T‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATg                       <  1:993060/126‑1 (MQ=255)
                                                                                                                    ttttttttt‑‑tt‑t‑t‑tt‑‑‑tttttttttGTTTAAATAAATTTAATATTTTGATCAACCAAAACTATAT‑CAAAAAAAT‑T‑ATAAAAAATAGTTTATTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                          <  2:2852442/120‑1 (MQ=255)
                                                                                                                    ttttttttt‑‑tt‑t‑t‑tt‑‑‑tttttttttGTAATAATAAAAGTAAGATTTGGATCTATCATAACTATAT‑CTAAAAATT‑T‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                          <  1:58904/120‑1 (MQ=255)
                                                                                                                    ttttttttt‑‑tt‑t‑t‑tt‑‑‑tttttttttGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATAT‑CAAAAAAAT‑T‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                          <  2:2767702/120‑1 (MQ=255)
                                                                                                                      ttttttt‑‑tt‑t‑t‑tt‑‑‑tttttttttGTAAAAATAAAAGTTAGATTTGGATCAAACAAAACTATAT‑CAAAAAAAT‑T‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                        <  1:856992/122‑1 (MQ=255)
                                                                                                                       ttgttt‑‑tt‑t‑t‑tt‑‑‑tttttttttttAAAAAAAAAATTAAGATTTGGAACAACCAAAACTAAAA‑AAAAAAAAT‑T‑AAAAAAAATAATTTTGTTGTTTTAAAAAAATGCATATATAATAAAAAGGTATTTATg                       >  1:1391780/6‑128 (MQ=255)
                                                                                                                        gtttt‑‑tt‑t‑t‑tt‑‑‑tttttttttttAAAAAAAAAATTAATATTTGGATAAACCAAAAATATAA‑CAAAAAAAA‑T‑AAAAAAAATAGTTTTGTTTATTTTAAAATCTGCATATATTGTACAAAGGAATTTAtta                      >  2:611327/5‑126 (MQ=255)
                                                                                                                         tttt‑‑tt‑t‑t‑tt‑‑‑tttttttttGTAAAAATAATAGTAAGATTTGGATCAAACAAAACTATAT‑AAAAAAAAT‑T‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGAt                     <  1:2081706/125‑1 (MQ=255)
                                                                                                                         tttt‑‑tt‑t‑t‑tt‑‑‑tttttttttGTAAAAATAAAAGTAAGATTTTGATTAATTAAAACTATAT‑CAAAAAAAT‑T‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGAt                     <  1:1884407/125‑1 (MQ=255)
                                                                                                                           tt‑‑tt‑t‑t‑tt‑‑‑tttttttttttAAAAATAAAAGTAAGATTTGGATAAACAAAAAATATAT‑AAAAAAAAT‑T‑AAAAAAAATATTTTATTTTATTTTAAAATATGAATATTTTTTAAAAAGTAATTTATtatat                   >  2:11773/2‑127 (MQ=255)
                                                                                                                           tt‑‑tt‑t‑t‑tt‑‑‑tttttttttGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATAT‑CAAAAAAAT‑T‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAg                   <  1:1662823/127‑1 (MQ=255)
                                                                                                                           tt‑‑tt‑t‑t‑tt‑‑‑tttttttttGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATAT‑AAAAAAAAT‑T‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAg                   <  2:814242/127‑1 (MQ=255)
                                                                                                                            t‑‑tt‑t‑t‑tt‑‑‑tttttttttttAAAATAAAAAGTAAGATTTGGTTCAAACAAAAATTTAT‑CAAAAAAAT‑T‑AAAAAAAAAAATTTAATTTATTTTAAAATCTTGATATTTAATACAAACGTATTTAtttttta                  >  2:876013/1‑122 (MQ=255)
                                                                                                                            t‑‑tt‑t‑t‑tt‑‑‑tttttttttGTAAAAATATAAGTAAGATTTGGATCATCCAAAACTATAT‑CAAAAAAAT‑T‑AAAAAAAATAGTTTTGTTTAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGa                  <  1:1199670/128‑1 (MQ=255)
                                                                                                                               tt‑t‑t‑tt‑‑‑tttttttttGTAAAAATAAAAGTATGATTTGGATCAAACAAAAATATAT‑CAAAAAAAT‑T‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                 <  2:3049488/128‑1 (MQ=255)
                                                                                                                               tt‑t‑t‑tt‑‑‑tttttttttGTAAAAATAAAAGTAAGATTTGGATCAACAAAAACTATAT‑AAAAAAAAT‑T‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                 <  1:913416/128‑1 (MQ=255)
                                                                                                                                    t‑tt‑‑‑tttttttttttAAAAATATAAGTAAGATTTGGATAAACCAAAACTATAT‑CAAAAAAAT‑T‑AAAAAAAATTGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa              <  1:224181/128‑1 (MQ=255)
                                                                                                                                    t‑tt‑‑‑tttttttttGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATAT‑CAAAAAAAT‑T‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa              <  2:2422966/128‑1 (MQ=255)
                                                                                                                                            ttttttttGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATAT‑CAAAAAAAT‑T‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATg          <  2:2743793/128‑1 (MQ=255)
                                                                                                                                               tttttGTAAAAATAAAAGTAAGATTTTGATCAAACAAAACTATAT‑CAAAAAAAT‑T‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAt       <  2:902850/128‑1 (MQ=255)
                                                                                                                                                ttttGTAAAAATAAAATTAAGATTTGGATCAACCAAAACTATAT‑CAAAAAAAT‑T‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAtt      <  2:2539660/128‑1 (MQ=255)
                                                                                                                                                 tttGTAAAAATAAAAGTAATATTTTTATAAATATTAACTATAT‑AAAATAAAT‑T‑AAAAAAAATAGTTTAGTTGATTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTa     <  2:1103911/128‑1 (MQ=255)
                                                                                                                                                  ttGTAATAATTTTAGTTAGATTTTGATTAATAAAAATTATAT‑AAAAAAAAT‑T‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGAATATATAGTACAAAGGAATTTATTATAGAAAAAAATGGATTAg    <  1:2300158/128‑1 (MQ=255)
                                                                                                                                                   tGTAAAAATAAAAGTAAGATTTGGATCTAATAAATCTATAT‑AAAAAAAAT‑T‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGt   <  2:2513777/128‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                  
AAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTC‑AAAGTG‑TA‑TTTTTTAGG‑‑‑C‑‑‑‑TTG‑‑‑‑T‑‑TT‑T‑T‑TT‑‑‑TTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATAT‑CAAAAAAAT‑T‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTT  >  CP016816/203786‑204039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑