Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,9370CA35.0% 1037.8 / 108.0 679intergenic (+321/+137)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base C (205/219);  new base A (180/48);  total (394/285)
Fisher's exact test for biased strand distribution p-value = 1.48e-14
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 685 total aligned reads displayed.

AGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAA‑GTGTATTTTTTA‑GGCT‑TG‑‑‑‑TT‑TTTTTTTTTTTTTTGTAAAAAT‑AAAAGTAAGATTTGGATCA‑ACCAAAACTATAT‑CAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTT  >  CP016816/203810‑204064
                                                                                                                                         |                                                                                                                                  
attcATTTTTAAAAAAGACTATTTTTTATTCTTTTTATTATAATTATAAAAAT‑TAAAACTCTTTCAAA‑TTTTATTTTTTT‑GGCT‑TT‑‑‑‑TT‑TTTTTTTTTTTTTTGTAAAAAT‑AAAAGTAAGATTTGGATc                                                                                                                                    <  2:1058358/125‑1 (MQ=255)
     ttttTAAAAAATGTTATGTTCTATTTTTTTTATTTTAATTATTAAAAT‑TACAACGCTTTAAAATTTTTTTTTTTTT‑GGGTGTT‑‑‑‑TT‑TTTTTTTTTTTTTTGTAAAAAT‑AAAAGTAAGATTTGGATCA‑Ac                                                                                                                                <  2:2722448/128‑1 (MQ=255)
        gTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAA‑GTGTATTTTTTA‑GGCT‑TGTT‑‑TT‑TTTTTTTTTTTTTTTTAAAAAA‑AAAATTAATATTTTGATaa‑aaaaa                                                                                                                             >  1:1569269/1‑124 (MQ=255)
          tataatgCCTATTTTATAGGATTTTTATTATACTTATAAAAAT‑TACAACGCTTTCAAA‑TTTTTTTTTTTA‑GGCT‑TGTT‑‑TT‑TTTTTTTTTTTTTTGTAAAAAT‑AAAAGTAAGATTTGGATCA‑ACCaaaa                                                                                                                           <  2:2524617/122‑1 (MQ=255)
          aaaaaaTCCATTTTTCTTGGCTTTTTATTATAATAATCAAAAT‑TTAAAATGTTTCAAA‑TTGTATTTTTTA‑TGCT‑TGT‑‑‑TT‑TTTTTTTTTTTTTTGTAAAAAT‑AAAAGTAAGATTTGGATCA‑ACCAAAAc                                                                                                                          <  1:3061948/128‑1 (MQ=255)
          aaaaaaGACTATTGTGTAGGTTTTTTTTTATAATTATAAAAATATAC‑ACGATATCAAA‑GTTTATTTTTTA‑GGCT‑TGTT‑‑TT‑TTTTTTTTTTTTTTGTAAAAAT‑AAAAGTAAGATTTGGATCA‑ACCaaaa                                                                                                                           <  2:1656276/128‑1 (MQ=255)
            aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAA‑GTGTATTTTTTA‑GGCT‑TGTT‑‑TT‑TTTTTTTTTTTTTTTTAAAAAA‑AAAATTATGATTTGGA‑AA‑ACCaaaaaaa                                                                                                                        >  2:2981845/1‑125 (MQ=255)
               agcatttGTTCTAGGCTTTTTATTTTAATTATAAAAAT‑TAAAACGCTTTCAAA‑TTGTTTTTTTTT‑GGCT‑TG‑‑‑‑TT‑TTTTTTTTTTTTTTGTAAAAAT‑AAAAGTAAGATTTGGATCA‑ACCAAAACTATAT‑c                                                                                                                   <  1:831114/122‑1 (MQ=255)
                    tttttttatgtttttttttttACTTTTCAATAT‑TAAAACGCTTTTAAT‑TTTTTTTTTTTA‑TGTT‑TGTTT‑TT‑TTTTTTTTTTTTTTGTAAAAAT‑AAAAGTAAGATTTGGATCA‑ACCAAAACTATAT‑Caa                                                                                                                 <  2:2423869/117‑1 (MQ=255)
                     gaacatAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAA‑GTGTATTTTATA‑GTCT‑TG‑‑‑‑‑‑‑‑TTTTTTTTTTTTTGTAAAAAT‑TAAAGTAAGATATGTATAA‑ACAAAAAATATAT‑AAATAAAttt                                                                                                          >  1:107820/6‑128 (MQ=255)
                      gTTCTAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAA‑GTGTATTTTTTA‑GGCT‑TGT‑‑‑TT‑TTTTTTTTTTTTTTTTAAAAAT‑AAAATTAATTTTTGGATAA‑ACCAAAAAGAAAT‑Aaaaaaa                                                                                                             >  1:2806347/1‑128 (MQ=255)
                       ttCTAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAA‑GTGTATTTTTTA‑GGCT‑TGTT‑‑TT‑TTTTTTTTTTTTTTGTAAAAAT‑AAAAGTAATTTTTTCATAA‑AACAAAAATATAT‑Caaaaaa                                                                                                             >  2:743906/1‑128 (MQ=255)
                       ttCTAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAA‑GTGTATTTTTTA‑GGCT‑TGT‑‑‑TT‑TTTTTTTTTTTTTTAGAAAAAA‑AAAAATAACATTTTTATCACACAAAAAATA‑AT‑aaaaaaaa                                                                                                            >  2:2107766/1‑128 (MQ=255)
                         cTAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAA‑GTGTATTTTTTA‑GGCT‑TG‑‑‑‑TT‑TTTTTTTTTTTTTTTTAAAAAT‑AAAAATAATATTTTGTTAA‑AACAAAACATTAT‑AAAAAAAATT‑a                                                                                                        >  1:369827/1‑128 (MQ=255)
                          tAGGCTTTTTATTATACTTATCAACAT‑TACATCGCTTTAAAA‑GTTTATTTTTTA‑GGCT‑TG‑‑‑‑TT‑TTTTTTTTTTTTTT‑TAAAAAT‑AAAATAAAAATTTTTATAA‑AAAAAAATAAAAT‑AAAAAAAATT‑aaa                                                                                                      >  1:740801/1‑128 (MQ=255)
                           aGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAA‑GTGTATTTTTTA‑GGCT‑TG‑‑‑‑TT‑TTTTTTTTTTTTTTTTAAAAAT‑AAAAGTAAGATTTGGATAA‑AACAAAAATTTAT‑AAAAAAAATT‑aaa                                                                                                      >  2:2625731/1‑128 (MQ=255)
                                 tttATTATACTTATCAACAT‑TACAACGCTTTCAAA‑GTGTATTTTTTA‑GGCT‑TGTT‑‑TT‑TTTTTTTTTTTTTTGTAAAAAT‑AAAATTAAGATTTGGATCA‑ACCAAAACTATAT‑AAAAAAAATT‑aaaaaaa                                                                                                  >  2:832477/1‑128 (MQ=255)
                                   tattatACTTATCAACAT‑TACAACGCTTTCAAA‑GTGTATTTTTTA‑GGCT‑TGTT‑‑TT‑TTTTTTTTTTTTTTTTAAAAAT‑TAAATTTATATTTTGAACA‑ACCAAAAATATAT‑CAAAAAAATT‑aaaaaaata                                                                                                >  1:2240576/1‑126 (MQ=255)
                                    attatAATTATCAAAAT‑AACAACGCTTTCAAA‑TTTTATTTTTTATGGGTGTT‑‑‑‑TT‑TTTTTTTTTTTTTTGTAAAAAT‑AAAAGTAAGATTTGGATCA‑ACCAAAACTATAT‑CAAAAAAATT‑AAAAAAAAta                                                                                               <  1:2519003/128‑1 (MQ=255)
                                       ataCTTATCAACAT‑TACAACGCTTTCAAA‑GTGTATTTTTTA‑GGCT‑TGT‑‑‑TT‑TTTTTTTTTTTTTTTTAAAAAT‑AAAATTAATATTTTGATAA‑ACCAAAAAAATAT‑AAAAAAAATT‑AAAAAAAAtatttt                                                                                           >  1:3162523/1‑128 (MQ=255)
                                       ataCTTATCAACAT‑TACAACGCTTTCAAA‑GTGTATTTTTTA‑GGCT‑TG‑‑‑‑TTATTTTTTTTTTTTTTTTAAAAATAAAAATTAATATTTATAAAA‑AAAAAAAAAATAT‑‑AAAAAAATT‑aaaaaaaaaaataa                                                                                           >  2:1346587/1‑122 (MQ=255)
                                         aCTTATCAAACA‑AACCACGCTATCAAA‑GTGTATTTTTTA‑GGCT‑TG‑‑‑‑TT‑TTTTTTTTTTTTTTGTAAAAAT‑AAAAGTAAGATTTGGATCA‑ACCAAAACTATAT‑CAAAAAAATT‑AAAAAAAAtagtttagt                                                                                        <  1:2610124/128‑1 (MQ=255)
                                          cTTATCAACAT‑TACAACGCTTTCAAA‑GTGTATTTTATA‑GGCT‑TGTTT‑TT‑TTTTTTTTTTTTTTGTAAAAAT‑AAAATTAAGTTTTGGATCA‑ACCAACACTATTT‑AAAAAAAATT‑AAAAAAAAtatttat                                                                                          >  1:2482832/1‑126 (MQ=255)
                                           ttATCAACAT‑TACAACGCTTTCAAA‑GTGTATTTTTTA‑GGCT‑TGTT‑‑TT‑TTTTTTTTTTTTTTTTAAAAAT‑AAAAATAAATATTGGAAAA‑AAAAAAAATATAT‑AAAAAAAATT‑AAAAAAAAtaattaata                                                                                        >  1:2982537/1‑124 (MQ=255)
                                            tATCAACAT‑TACAACGCTTTCAAA‑GTGTATTTTTTA‑GGCT‑TGTTT‑TT‑TTTTTTTTTTTTTTTTAAAAAA‑AAAATTAATATTTTGAAAA‑AACAAAAAAATAT‑AAAAAAAATT‑AAAAAAAAtatttttat                                                                                        >  2:1973887/1‑125 (MQ=255)
                                             aTCAACAT‑TACAACGCTTTCAAA‑GTGTATTTTTTA‑GGCT‑TGTTTTTT‑TTTTTTTTTTTTTTTTAAAAAA‑AAAATTAATATTTTGATAA‑ACCAAAAAAATAT‑AAAAAAAATT‑aaaaaaaaatttttatt                                                                                        >  2:232985/1‑119 (MQ=255)
                                             aTCAACAT‑TACAACGCTTTCAAA‑GTGTATTTTTTA‑GGCT‑TGTT‑‑TT‑TTTTTTTTTTTTTTTTAAAAAT‑AAAATTATTATTTGTATAA‑ACCAAAAAAATATAAAAAAAAATT‑aaaaaaaaattttttttt                                                                                       >  1:2884054/1‑118 (MQ=255)
                                             aTCAACAT‑TACAACGCTTTCAAA‑GTATATTTTTTA‑GGCT‑TGTT‑‑TT‑TTTTTTTTTTTTTTTTAAAAAT‑AAAATTAATATTTTGTTAA‑AACAAAACTATAT‑AAAAAAAAAT‑AAAAAAAAtattttagttt                                                                                      >  2:353584/1‑127 (MQ=255)
                                              tCAACAT‑TACAACGCTTTCAAA‑GTGTATTTTTTA‑GGCT‑TGTT‑‑TT‑TTTTTTTTTTTTTTTTAAAAAT‑AAAATTAAGTTTTGTAAAA‑ACAAAAACAATAT‑AAAAAAAAAT‑AAAAATAAtaatttttttta                                                                                     >  2:885830/1‑122 (MQ=255)
                                              tCAACAT‑TACAACGCTTTCAAA‑GTGTATTTTTTA‑GGCT‑TGT‑‑‑TT‑TTTTTTTTTTTTTTTTAAAAAT‑AAAATTAAGATTTGGTTAA‑ACCAAAAATTTAT‑AAAAAAAATA‑AAAAAAAATAGTATAGTTTAg                                                                                    >  2:625398/1‑128 (MQ=255)
                                               cAACAT‑TACAACGCTTTCAAA‑GTGTATTTTTTA‑GGCT‑TGTT‑‑TT‑TTTTTTTTTTTTTTTTAAAAAT‑AAAATTAAAATTTTAAAAA‑ACCAAAACAAAAA‑AAAAAAAATT‑AAAAAAAATATTTTAATTTAg                                                                                    >  1:2748348/1‑128 (MQ=255)
                                                        cAACGCTTTCAAA‑GTGTATTTTTTA‑GGCT‑TGTTT‑TT‑TTTTTTTTTTTTTTTTTAAAAA‑AAAATTAAAATTTTGATAA‑ACCAAAAATTTTA‑AAAAAAAATT‑AAAAAAAAAATTTTTATTTAGTTTaaaa                                                                             >  2:1744777/1‑128 (MQ=255)
                                                          aCGCTTTCAAA‑GTGTATTTTTTA‑GGCT‑TGTTT‑TT‑TTTTTTTTTTTTTTTTAAAAAA‑AAAATAAAGATTTGTATAA‑ACCAAAACAAATT‑CAAAAAAAAT‑AAAAAAAATAATATATTTGAGTTTaaaaaa                                                                           >  2:1606747/1‑126 (MQ=255)
                                                          aCGCTTTCAAA‑GTGTATTTTTTA‑GGCT‑TGTT‑‑TT‑TTTTTTTTTTTTTTTTAAAAAT‑AAAATTAAAATTTTGAACA‑ACAAAAAATATAT‑AAAAAAAATT‑AAAAAAAAAATTTTATTTTATTTTAAAAACt                                                                          >  2:24792/1‑128 (MQ=255)
                                                          aCGCTTTCAAA‑GTGTATTTTTTA‑GGCT‑TGTT‑‑TT‑TTTTTTTTTTTTTTTTAAAAAT‑AAAATTAAAATTTGGTTCA‑ACCAAAACTATTT‑AAAAAAAATT‑AAAAAAAAAAGTTTAATTGAGTTTAAAAACt                                                                          >  2:519249/1‑128 (MQ=255)
                                                          aCGCTTTCAAA‑GTGTATTTTTTA‑GGCT‑TG‑‑‑‑TT‑TTTTTTTTTTTTTT‑TAAAAAT‑AAAAGTAAAATTTGGATCA‑ACCAAAAATATAT‑AAAAAAAATT‑AAAAAAAATATTTTATTTGAGTTTAAAATCTgaa                                                                       >  2:775166/1‑126 (MQ=255)
                                                           cGCTTTCAAA‑GTGTATTTTTTA‑GGCT‑TGTTT‑TT‑TTTTTTTTTTTTTTTTAAAAAT‑AAAATTAAAATTTGTATAA‑ACCAAAAATATAT‑AAAAAAAATT‑AAAAAAAATTTTTTATTTAATTTTaaaaaat                                                                          >  2:1935321/1‑125 (MQ=255)
                                                            gCTTTCAAA‑GTGTATTTTTTA‑GGCT‑TGTT‑‑TT‑TTTTTTTTTTTTTTTTAAAAAA‑AAAATTAATATTTGGATAA‑ACCAAAAAAATAT‑AAAAAAAATT‑AAAAAAAAAATTTTATTTTTGTTTaaaaaaagc                                                                        >  2:1810147/1‑123 (MQ=255)
                                                               ttCAAA‑GTGTATTTTTTA‑GGCT‑TGTT‑‑TT‑TTTTTTTTTTTTTTTTAAAAAA‑AAAAGTAAGATTTGGATCA‑ACCAAAAATATAT‑AGAAAAAATT‑AAAAAAAAAATTTTAGTTGATTTTCaaaatagcatt                                                                     >  2:2445222/1‑120 (MQ=255)
                                                                 cAAA‑GTGTATTTTTTA‑GGCT‑TGTTT‑TT‑TTTTTTTTTTTTTTGTAAAAAT‑AAAATTAATATTTGGATAA‑ACCAAAAATATAA‑AAAAAAAATT‑AAAAAAAATATTTTTTTTTAGTTTAAAATATGCaaaa                                                                    >  2:117126/1‑125 (MQ=255)
                                                                         tATTTTTTA‑GGCT‑TGTT‑‑TT‑TTTTTTTTTTTTTTGTAAAAAA‑AAAAATAACATTTGGAACA‑ACCAAAACATTAT‑AAAAAAAATA‑TAAAAAAATAGTTTATTTGTCTTTAAAATATGAaaataaataaca                                                            >  1:33435/1‑121 (MQ=255)
                                                                                 a‑GGCT‑TG‑‑‑‑‑T‑TTTTTTTTTTTTTTGTAAAAAT‑AAAATTAAGATTTGGATCA‑ACCAAAACTATAT‑CAAAAAAATT‑AAAAAAAAAAGTTTATTTTATTTTAAAAACTGAATATATTGTACAAATGAAtgttt                                                 >  1:618518/1‑124 (MQ=255)
                                                                                     ttttttttttt‑ttttttttttttttGTAAAAAT‑AAAAGTTAGATTTGGATCA‑ACCAAAACTATAT‑CAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAtt                                                    <  1:936073/119‑1 (MQ=255)
                                                                                      tttttttttt‑ttttttttttttttGTAAAAAT‑AAAAGTAAGATTTGGATCA‑AACAAAACTATAT‑AAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                                                   <  2:392589/120‑1 (MQ=255)
                                                                                      ttattatttt‑ttttttttttttttGTAAAAAT‑AAAAGTAAGATTTGGATCA‑AACAAAACTATAT‑CAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                                                   <  2:2846414/120‑1 (MQ=255)
                                                                                       ttttttttt‑ttttttttttttttttTAAAAT‑AAAAGTAAGATTTTTATAA‑AAAAAAATTATAT‑AAAAATAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa                                                  <  1:521133/121‑1 (MQ=255)
                                                                                        tttttttt‑ttttttttttttttGTATAAAT‑AAAAGTAAGATTTGGATCT‑ACCAAAACTATAT‑CAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                                 <  1:2952689/122‑1 (MQ=255)
                                                                                        tttttttt‑ttttttttttttttGTAAAAAT‑AAAAGTAAGATTTGGATCA‑ACAAAAACTATAT‑CAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                                 <  1:2844760/122‑1 (MQ=255)
                                                                                           ttttt‑ttttttttttttttGTAAAATT‑AAAAGTAAGATTTGGATCA‑ACCAAAACTATAT‑CAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGAt                                              <  1:1133875/125‑1 (MQ=255)
                                                                                           ttttt‑ttttttttttttttGTAAAAAT‑AATAGTAAGATTTGGATCA‑AACAAAACTATAT‑AAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGAt                                              <  1:2081706/125‑1 (MQ=255)
                                                                                            gttt‑ttttttttttttttttAAAAAT‑AAAAGTAAGATTTGGATAA‑ACCAAAACTATAT‑AAAAAAAATT‑AAAAAAAATAGTTTAGTTTTGTTTAAAATCTTCATATAATTTAAAAATGAATTTataata                                             >  2:323117/3‑128 (MQ=255)
                                                                                             ttt‑ttttttttttttttGTAAAAAT‑AAAAGTAAGATTTGTATCA‑ACAAAAACTATAT‑CAAAAAAATT‑AAATAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAg                                            <  1:2417168/127‑1 (MQ=255)
                                                                                             ttt‑ttttttttttttttGTAAAAAT‑AAAAGTAAGATTTGGATCA‑ACCAAAACTATAT‑CAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAg                                            <  2:2589999/127‑1 (MQ=255)
                                                                                              tt‑ttttttttttttttttAAAAAT‑AAAATTAAGATTTGGTTAA‑ACCAAAAATATTT‑AAAAAAAATT‑AAAAAAAATATTTTATTTTAGTTACAAATATGAAAATATAGAAAAAAAGATTTTTTtataaa                                           >  2:2759472/1‑126 (MQ=255)
                                                                                              tt‑ttttttttttttttGTAAAAAT‑ATAAGTAAGATTTGGATCA‑TCCAAAACTATAT‑CAAAAAAATT‑AAAAAAAATAGTTTTGTTTAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGa                                           <  1:1199670/128‑1 (MQ=255)
                                                                                               t‑tttttttttttttttTAAAATT‑AAAAGTAATATTTTGATTA‑ATTATTAATATTT‑TAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                                          <  1:1941638/128‑1 (MQ=255)
                                                                                               t‑tttttttttttttttTAAAAAT‑AAAAGTAAGATTTGTATAA‑AACAAAAATATAT‑AAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                                          <  2:1710979/128‑1 (MQ=255)
                                                                                                 ttttttttttttttGTAAAAAT‑ATAAGTAATATTTTTTTCA‑ACAAAAACTATAT‑GAAATAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGAATATATAGTACAAAGGAATTTATGATAGaaa                                         <  1:153234/128‑1 (MQ=255)
                                                                                                    ttttttttttttTATAAAT‑AAAAGTATGATTTGGATCA‑ATCAAAACTATAT‑AAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaa                                      <  2:2493470/128‑1 (MQ=255)
                                                                                                       ttttttttGTAAAAAT‑AAAAGTAAGATTTGGATCA‑ACCAAAAATATAT‑CAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATg                                   <  2:2935634/128‑1 (MQ=255)
                                                                                                         ttttttGTAAAAAT‑AATTTTAATATTTGTATCA‑ACTAAAACTATAT‑CAAAAAAATT‑AAAATAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGa                                 <  1:1366832/128‑1 (MQ=255)
                                                                                                         ttttttGTAAAAAT‑AAAAGTAAGATTTGGATCA‑CCCAAAACTTTAT‑CATAAAAATT‑AAAAAAAATATTTTATTTTAATTTCAAAACTGCAAATATAGTACAAATGAATTTTTTATATAAAAAAATTGa                                 >  2:3106849/1‑128 (MQ=255)
                                                                                                             ttGTAATAAT‑TTTAGTTAGATTTTGATTA‑ATAAAAATTATAT‑AAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGAATATATAGTACAAAGGAATTTATTATAGAAAAAAATGGATTAg                             <  1:2300158/128‑1 (MQ=255)
                                                                                                              tGTAAAAAT‑ATAAGTAAGATTTGGATAA‑ACCTAAACTATAT‑TAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGATTTTATGATAGAAAAAAATGGATTatc                            <  1:852173/128‑3 (MQ=255)
                                                                                                                tAAAAAT‑AAAAGTAAGATTTGGATCA‑ACAAAAACTATAT‑CAAAAAAATT‑AAAAAAATTAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaa                          <  2:2677918/128‑5 (MQ=255)
                                                                                                                 ttaaaT‑AATATTATGTTTTTGATTA‑AGAAAAACTATAT‑TAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCTAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGa                         <  1:202492/126‑1 (MQ=255)
                                                                                                                 aaaaaT‑ATAAGTAAGATTTTGATAA‑AACAAAAATATAT‑AAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAATGAATTTATGATAGAAAAAAATGGATTAGTTGa                         <  2:1515730/128‑1 (MQ=255)
                                                                                                                 aaaaaT‑AAAAGTAAGATTTTGATCA‑ACCAAAACTATAT‑CAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGa                         <  1:2695998/128‑1 (MQ=255)
                                                                                                                  aaaaT‑AAAAGTAAGATTTGGATCA‑ATCAAAACTATAT‑CAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGAATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGAt                        <  2:1097327/128‑1 (MQ=255)
                                                                                                                  aaaaT‑AAAAGTAAGATTTGGATCA‑ACCAAAACTATAT‑CAAAATAATT‑AAAAAAAATAGTTTAGTTTAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaact                        <  2:2881254/128‑7 (MQ=255)
                                                                                                                      t‑AAAAGTATTATTTTTATAA‑AATAAAAATATAT‑AAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                    <  1:126825/128‑1 (MQ=255)
                                                                                                                      t‑AAAAGTATGATTTGGATCA‑AACAATACTATAT‑CAAAAAAATT‑‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                   <  1:897859/128‑1 (MQ=255)
                                                                                                                      t‑AAAAGTAAGATTTGGATCA‑ACCAAAACTATAT‑TAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                    <  2:3162523/128‑1 (MQ=255)
                                                                                                                      t‑AAAAGTAAGATTTGGATCA‑ACCAAAACTATAT‑CAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAATAAATGGATTAGTTGATAAtg                    >  1:442879/1‑127 (MQ=255)
                                                                                                                      t‑AAAAGTAAGATTTGGATCA‑ACCAAAACTATAT‑CAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGATGATAATc                    >  2:1243285/1‑128 (MQ=255)
                                                                                                                        aaaaGTTAGTTTTTGATAA‑AAGAAAACTATAT‑TAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                   <  1:2553357/128‑1 (MQ=255)
                                                                                                                        aaaaGTATGATTTTGATCA‑AACAAATCTATAT‑AAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCATATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                   <  2:444357/128‑1 (MQ=255)
                                                                                                                        aaaaGTAAGATTTGGATCA‑ACCAAAACTATAT‑CAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                   >  2:2811395/1‑128 (MQ=255)
                                                                                                                        aaaaGTAAGATTTGGATCA‑ACCAAAACTATAT‑CAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                   <  1:2649137/128‑1 (MQ=255)
                                                                                                                         aaaGTAAGATTTGGATCA‑ACCAAAACTATAT‑CAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATTGATTAGTTGATAATCCa                  >  1:146477/1‑128 (MQ=255)
                                                                                                                           tgTAAGTTTTGTATCA‑ACCAAAACTATAT‑CAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtt                <  2:3043992/127‑1 (MQ=255)
                                                                                                                           attAAGATTTTGATCA‑AACAAAACTATAT‑CAAAAAAATT‑AAAAATAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtt                <  2:101139/126‑1 (MQ=255)
                                                                                                                            tatagttttGGTTGA‑TCCAAATCTATAT‑CAAAAAAATTAAAAAAAAATAGTTTAGTTGAGTTTCAAATATGCATATATAGTACAAAGGAATTTATGATAGAAAAAAAAGGATTAATTGATAATACAtt                >  1:308645/7‑128 (MQ=255)
                                                                                                                            gTAAGATTTGGATCA‑ACCAAAACTATAT‑CAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttt               >  2:2555059/1‑128 (MQ=255)
                                                                                                                              taGATTTGGATCA‑ATCAAAACTATAT‑CAATAAATTT‑ATAAAAATTTGTTTAGTTGAGTTTCAAATCTTCATATATAGTACAAAGGAATTTATGAAAGAAAAAAATGGATTAGTTGATAATCCAttttt             <  1:1652863/127‑1 (MQ=255)
                                                                                                                              aaGATTTGGATCA‑ACCAAAACTATAT‑CAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttttt             >  2:3075185/1‑128 (MQ=255)
                                                                                                                              aaGATTTGGATCA‑ACCAAAACTATAT‑CAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATAATAGAAAAAAATGGATTAGTTGATAATCCAttttt             >  1:1734484/1‑128 (MQ=255)
                                                                                                                               aGATTTTGATAA‑AAAAAAAATATAT‑AATATAAATT‑AAAAATATTAGTTTTGTTGAGTTTAATATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt            <  2:2038818/128‑1 (MQ=255)
                                                                                                                               aGATTTGGATCA‑ACCAAAACTATAT‑CAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt            >  1:3112035/1‑128 (MQ=255)
                                                                                                                               aGATTTGGATCA‑ACCAAAACTATAT‑CAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt            >  2:1405433/1‑128 (MQ=255)
                                                                                                                               aGATTTGGATCA‑ACCAAAACTATAT‑CAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt            >  2:1881711/1‑128 (MQ=255)
                                                                                                                               aGATTTGGATCA‑ACCAAAACTATAT‑CAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt            >  2:221470/1‑128 (MQ=255)
                                                                                                                               aGATTTGGATCA‑ACCAAAACAATAT‑CAAAAAAATT‑AAAAAAAATAGTTTAGATGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGTATTAGTAGATAATCCAttttta            >  2:2652748/1‑127 (MQ=255)
                                                                                                                                gATTTGGATCA‑ACCAAAACTATAT‑CAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCTGTTTTTa           >  1:187617/1‑128 (MQ=255)
                                                                                                                                  tttGGATCA‑ACCAAAACTATAT‑CAAAAAAATT‑‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAtt        >  1:2149894/1‑128 (MQ=255)
                                                                                                                                   ttGGATCA‑ACGAAAACTATAT‑AAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAtt        <  1:2926708/128‑1 (MQ=255)
                                                                                                                                   ttGGATCA‑ACCAAAACTATAT‑CAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAtt        <  1:1003771/128‑1 (MQ=255)
                                                                                                                                    tGGATCA‑ACCAAAACTATAT‑CAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAttt       >  2:681513/1‑128 (MQ=255)
                                                                                                                                      gATCA‑ACCAAAACTATAT‑ATAAAAAATT‑AAAAATAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTg     <  2:932792/128‑1 (MQ=255)
                                                                                                                                         cA‑ACCAAAACTATAT‑CAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAACGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGttt  >  2:2865817/1‑128 (MQ=255)
                                                                                                                                         |                                                                                                                                  
AGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAA‑GTGTATTTTTTA‑GGCT‑TG‑‑‑‑TT‑TTTTTTTTTTTTTTGTAAAAAT‑AAAAGTAAGATTTGGATCA‑ACCAAAACTATAT‑CAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTT  >  CP016816/203810‑204064

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑