Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,9520CA36.0% 1161.1 / 160.4 739intergenic (+336/+122)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base C (226/227);  new base A (187/68);  total (418/321)
Fisher's exact test for biased strand distribution p-value = 8.45e-10
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 768 total aligned reads displayed.

CCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑CTTG‑‑‑‑‑TTTTTTTTTTTTTTTTGT‑A‑AAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAATTATTAAGC  >  CP016816/203827‑204079
                                                                                                                                       |                                                                                                                                
tcTATGTTCATCGGTTTTTATTAAACTTATCAACATTACAACTCTTTCAAATTGTA‑TTTTTTTGG‑CTTGT‑‑‑‑TTTTTTTTTTTTTTTTGT‑A‑AAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATATCa                                                                                                                                 <  1:1391283/127‑1 (MQ=255)
  tagaacatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑CTTGTT‑‑‑TTTTTTTTTTTTTTTTGT‑A‑AAAATAAAAGT‑AATATTTCTTGAAACCAAAACTATATCaa                                                                                                                                >  2:2527236/8‑128 (MQ=255)
    ttttctttgtttttttttATACTTTTCAAAAATAAAACCCTTTAAAATTTTA‑TTTTTTAGG‑GTTGTTT‑‑TTTTTTTTTTTTTTTTGT‑A‑AAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATATCaaa                                                                                                                               <  1:3133757/118‑1 (MQ=255)
     gTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑CTTGTT‑‑‑TTTTTTTTTTTTTTTTTT‑A‑AAAATAAAAGT‑AATATTAGTATAAACCAAAAATATataaataa                                                                                                                             >  2:2490/1‑128 (MQ=255)
         tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑CTTG‑‑‑‑‑TTTTTTTTTTTTTTTT‑T‑A‑AAAATAAAATT‑AATATTTGTATCAACAAAACATAATTAAAAAAAAAT‑aaa                                                                                                                     >  2:1661069/1‑128 (MQ=255)
          agtcTTTTTATTATAATATAAAACATTAAAAAGATTTAAAATTTTA‑TTTTTTTGG‑TTTGTTTT‑TTTTTTTTTTTTTTTTGT‑A‑AAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATATCAAAAAAAt                                                                                                                          <  2:2605719/125‑1 (MQ=255)
          aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑CTTGTT‑‑‑TTTTTTTTTTTTTTTTTT‑A‑AAAATAAAATT‑AAATTTTGTTTAAACCAAAAAAATATCAAAAAAAAT‑a                                                                                                                       >  1:810827/1‑128 (MQ=255)
           ttgttttttttttAATTATAAAAATTAAAAAGCTTTTAAATTTTATTTTTTTTGGTTTTT‑‑‑‑‑TTTTTTTTTTTTTTTTGT‑A‑AAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATATCAAAAAAATT‑aa                                                                                                                      <  1:348050/125‑1 (MQ=255)
             cTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑CTTGTT‑‑‑TTTTTTTTTTTTTTTTTT‑A‑AAAAAAAAATT‑AATATTTTTATAAAAAAAAAATATATAAAAAAAATT‑aaaa                                                                                                                    >  2:682657/1‑128 (MQ=255)
              tttttATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑CTTGTT‑‑‑TTTTTTTTTTTTTTTTTT‑A‑AAAATAAAAGT‑AAAATTTTGATCCACCAAAACAAATAAAAAAAAAAT‑aaaaa                                                                                                                   >  1:2856866/1‑128 (MQ=255)
               ttttATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑CTTGT‑‑‑‑TTTTTTTTTTTTTTTTTT‑A‑AAAATAAAATA‑AAAATTATAATAAAACAAAACTATAAAAAAAAAATa‑aaaaaaa                                                                                                                 >  1:1885700/1‑128 (MQ=255)
                tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑CTTGTT‑‑‑TTTTTTTTTTTTTTTTGT‑A‑AAAATAAAATT‑AAGATTTGGATCAACCAAAACTATATAAAAAAAATT‑aaaaaaa                                                                                                                 >  2:832477/1‑128 (MQ=255)
                tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑CTTG‑‑‑‑‑TTTTTTTTTTTTTTTTTTAA‑AAAATAAAATT‑AAAATTTGTATCAACCAAAACAAAAAAAAAAAAATG‑aaaaaaaa                                                                                                                >  1:2632373/1‑128 (MQ=255)
                 ttattaTACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑CTTG‑‑‑‑‑TTTTTTTTTTTTTTTTTT‑ATAAAAAAAAAATAAAGATTTTTA‑AAACCAAAAAAAAATAAAAAAAATT‑taaaaaaaa                                                                                                               >  2:1712180/1‑127 (MQ=255)
                   attatACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑CTTG‑‑‑‑‑TTTTTTTTTTTTTTTTTT‑A‑AAAATAAAAGT‑AATATTTGGAAAAACCAAAACTATATAAaaaaaaat‑aaaaaaaatatt                                                                                                            >  1:1524402/1‑126 (MQ=255)
                     tataCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑CTTGTTTTTTTTTTTTTTTTTTTTTTT‑A‑AAAAAAAAAAT‑AAATATTGTTTCAAACAAAAAATAAtaaaaaaaatt‑aaaaaaaat                                                                                                               >  2:2665680/1‑128 (MQ=255)
                      ataCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑CTTGTT‑‑‑TTTTTTTTTTTTTTTTTT‑A‑AAAAAAAAATT‑AATATTTTTATAAAAAAAAAATAAATAAAAAAATTT‑aaaaaaaaaaata                                                                                                           >  2:1204753/1‑123 (MQ=255)
                          ttATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑CTTGTTT‑‑TTTTTTTTTTTTTTTTTT‑A‑AAAAAAAAATT‑AATATTTGTATAAACCAAAAATATATAAAAAAAATA‑AAAAAAAAtattttat                                                                                                        >  2:202190/1‑127 (MQ=255)
                            aTCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑CTTGTTTT‑TTTTTTTTTTTTTTTTTT‑A‑AAAATAAAATT‑AATATTTTTATAAACAAAAAATATATAAAAAAAATT‑AAAAAAAAtattttttt                                                                                                       >  2:2187818/1‑125 (MQ=255)
                             tCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑CTTGTT‑‑‑TTTTTTTTTTTTTTTTTT‑T‑AAAAAAAAATT‑ATGATTTGGATAAACCAAAACTATAAAAAAAAAAAT‑AAAAAAAAtagtttatatta                                                                                                    >  2:569022/1‑123 (MQ=255)
                             tCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑CTTGTT‑‑‑TTTTTTTTTTTTTTTTTT‑A‑AAAATAAAATT‑AAGTTTTGTAAAAACAAAAACAATATAAAAAAAAAT‑AAAAATAAtaatttttttta                                                                                                    >  2:885830/1‑122 (MQ=255)
                             tCAAAATTACAACGGTTTAAAAGTGTATTTTTTTGGG‑TTTT‑‑‑‑‑TTTTTTTTTTTTTTTTGT‑A‑AAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAg                                                                                                   <  1:2758364/128‑1 (MQ=255)
                               aaCATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑CTTGTT‑‑‑TTTTTTTTTTTTTTTTTT‑A‑AAAATAAAATT‑TATTTTTTGATAAACAAAAAATATATAAAAAAAATT‑AAAAAAATTATTTTATTTGatt                                                                                                  >  2:627610/1‑126 (MQ=255)
                                aCATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑CTTGTT‑‑‑TTTTTTTTTTTTTTTTTT‑A‑AAAATAAAATT‑AAAATTTGGATAAACCAAAAATATAAAAAAAAAATT‑AAAAAAAAtattttattttattt                                                                                                 >  2:1160918/1‑123 (MQ=255)
                                      cAACGCTTTCAAAGTGTA‑TTTTTTAGG‑CTTG‑‑‑‑‑TTTTTTTTTTTTTTTTTTAA‑AAAATAAAATT‑AAAATTTGGAAAAACCAAAAATATAAAAAAAAAATA‑AAAAAAAATAGTTTTTTTTATTTTAAAAta                                                                                          >  2:2081706/1‑127 (MQ=255)
                                        aCGCTTTCAAAGTGTA‑TTTTTTAGG‑CTTGTTT‑‑TTTTTTTTTTTTTTTTTT‑A‑AAAAAAAAATA‑AAGATTTGTATAAACCAAAACAAATTCAAAAAAAAT‑AAAAAAAATAATATATTTGAGTTTaaaaaa                                                                                          >  2:1606747/1‑126 (MQ=255)
                                        aCGCTTTCAAAGTGTA‑TTTTTTAGG‑CTTGTT‑‑‑TTTTTTTTTTTTTTTTTT‑A‑AAAATAAAAGT‑AAAATTTGGATCAACCAAAACTAAATAAAAAAAAAT‑AAAAAAAAAATTTTATTTTATTTTaaaaaat                                                                                         >  1:2696101/1‑125 (MQ=255)
                                        aCGCTTTCAAAGTGTA‑TTTTTTAGG‑CTTGT‑‑‑‑TTTTTTTTTTTTTTTTGT‑A‑AAAATAAAATT‑AAAATTTGGAACAACAAAAAAT‑TATAAAAAAAATTAAAAAAAAAAATTTTAGTTGATGTTAAAATATg                                                                                        >  2:3169364/1‑128 (MQ=255)
                                         cGCTTTCAAAGTGTA‑TTTTTTAGG‑CTTGTTT‑‑TTTTTTTTTTTTTTTTTT‑A‑AAAATAAAATT‑AAAATTTGTATAAACCAAAAATATATAAAAAAAATT‑AAAAAAAATTTTTTATTTAATTTTaaaaaat                                                                                         >  2:1935321/1‑125 (MQ=255)
                                          gCTTTCAAAGTGTA‑TTTTTTAGG‑CTTGTT‑‑‑TTTTTTTTTTTTTTTTTT‑A‑AAAATAAAATT‑AATATTTTGATCAACCAAAACTATAAAAAAAAAATT‑AAAAAAAAAATTTTAATTAATTTTaaaaaatgc                                                                                       >  1:2666823/1‑123 (MQ=255)
                                          gCTTTCAAAGTGTA‑TTTTTTAGG‑CTTGTT‑‑‑TTTTTTTTTTTTTTTTTT‑A‑AAAAAAAAATT‑AATATTTGGATAAACCAAAAAAATATAAAAAAAATT‑AAAAAAAAAATTTTATTTTTGTTTaaaaaaagc                                                                                       >  2:1810147/1‑123 (MQ=255)
                                            tttataattgtA‑TTTTTTAGG‑CTTG‑‑‑‑‑‑‑‑TTTTTTTTTTTTTGT‑A‑AAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCAtatata                                                                                <  2:1765300/120‑1 (MQ=255)
                                             ttCAAAGTGTA‑TTTTTTAGG‑CTTGTTT‑‑TTTTTTTTTTTTTTTTTT‑A‑AAAAAAAAAGT‑AATATTTTGAAAAACCAAAAAAATAAAAAAAAAAAT‑AAAAAAAAAAATTTAATTAATTTTCAAAtatacaa                                                                                     >  1:3094538/1‑122 (MQ=255)
                                              tCAAAGTGTA‑TTTTTTAGG‑CTTGTT‑‑‑TTTTTTTTTTTTTTTTGT‑A‑AAAATAAAATT‑AATATTTGGATCAACAAAAAAATTATCAAAAAAATT‑AAAAAAAAAATTTTATTTGAATTTAAAATATgaaata                                                                                   >  2:454064/1‑123 (MQ=255)
                                                aaaGTGTA‑TTTTTTAGG‑CTTGTTT‑‑TTTTTTTTTTTTTTTTGT‑A‑AAAATAAAAGT‑AATTTTTGGTACAACAAAAAATATATAAAAAAAATT‑AAAAAAAATATTTTTTTTGATTGTCaaaatgcaataat                                                                                  >  2:1398126/1‑118 (MQ=255)
                                                aaaGTGTA‑TTTTTTAGG‑CTTGT‑‑‑‑TTTTTTTTTTTTTTTTTT‑A‑AAAATAAAATT‑AAGATTTGGAAAAACAAAAACTAATACAAAAAAATT‑AAAAAAAAAATTTTATTTTATTTTAAAAAATGAAtatata                                                                                >  2:2311545/1‑128 (MQ=255)
                                                  aGTGTA‑TTTTTTAGG‑CTTGTT‑‑‑TTTTTTTTTTTTTTTTTT‑A‑AAAATAAAATT‑AAGATTTGGATAAACCAAAAAAAAATAAAAAAAATT‑AAAAAAAATATTTTTGTTTTGTTTAAAATATGAatttttat                                                                               >  1:1097327/1‑122 (MQ=255)
                                                     gtA‑TTTTTTTTG‑CTTT‑‑‑‑‑TTTTTTTTTTTTTTTTGT‑A‑AAAATAAAAGT‑AATATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACaa                                                                          <  2:361796/128‑1 (MQ=255)
                                                      tA‑TTTTTTAGG‑CTTGTT‑‑‑TTTTTTTTTTTTTTTTTT‑A‑AAAATAAAAAT‑AAATTTTTGA‑AAACCCAAAAAATATAAAAAAAAAT‑TAAAAAAATATTTTAATTTATTTTTAAATATG‑Atatatatttaaaa                                                                         >  1:1568544/1‑121 (MQ=255)
                                                               aGG‑CTTG‑‑‑‑‑‑TTTTTTTTTTTTTTTGT‑A‑AAAATAAAATT‑AAGATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAAAAGTTTATTTTATTTTAAAAACTGAATATATTGTACAAATGAAtgttt                                                                >  1:618518/1‑124 (MQ=255)
                                                                  gtttG‑‑‑‑‑TTTTTTTTTTTTTTTTGT‑A‑AAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATg                                                               <  1:993060/126‑1 (MQ=255)
                                                                    ttttttttttttttttttttttttGT‑A‑AAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                                                                  <  2:2767702/120‑1 (MQ=255)
                                                                    tgttttttttttttttttttttttGT‑A‑AAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                                                                  <  2:2722236/120‑1 (MQ=255)
                                                                     tttgtttttttttttttttttttGT‑A‑AAAATAAAAGT‑ATGATTTGTATCAACCAAAAATATATAAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa                                                                 <  2:2866387/121‑1 (MQ=255)
                                                                      tttttttttttttttttttttttt‑A‑AATATAAAATT‑AAGATTTGGATAAAACAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                                                <  2:783671/122‑1 (MQ=255)
                                                                      ttttttttttttttttttttttGT‑A‑AAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                                                <  2:2635594/122‑1 (MQ=255)
                                                                          gttttttttttttttttttt‑A‑AAAATAAAATT‑AAAATTTGGATAAACCAAAAATAT‑TTAAAAAAATT‑AAAAAAAAAATTTTTTTTTATTTTAAAAAATAAATATAAATTAAAAATTAATTTATgtaat                                                           >  2:2566165/3‑124 (MQ=255)
                                                                            ttttttttttttttttGT‑A‑AAAATATAAGT‑AAGATTTGGATCATCCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTTGTTTAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGa                                                          <  1:1199670/128‑1 (MQ=255)
                                                                                ttttttttttttGT‑A‑AAAATATAAGT‑AAGATTTGGATCAACCATAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa                                                      <  1:2244590/128‑1 (MQ=255)
                                                                                ttttttttttttGT‑A‑AAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa                                                      <  1:2443139/128‑1 (MQ=255)
                                                                                      ttttttGT‑A‑AAAATAAAAGT‑AAGATTTGGATCACCCAAAACTTTATCATAAAAATT‑AAAAAAAATATTTTATTTTAATTTCAAAACTGCAAATATAGTACAAATGAATTTTTTATATAAAAAAATTGa                                                >  2:3106849/1‑128 (MQ=255)
                                                                                       ttttttT‑A‑AAAATAAAAGT‑AATATTTTTATTAAATATAAATATATAAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAt                                               <  1:422597/128‑1 (MQ=255)
                                                                                          tttt‑A‑AATATAAAAGT‑ATGATTTGTATCAAACAAAACTATATCATAAAAATT‑AAAAAAATTAGTTTAGTTGAGCTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat                                            <  2:395709/125‑2 (MQ=255)
                                                                                            gT‑A‑TAAATAAATTT‑AAGATTTGGATAAACCAAAAATTTATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAATGAATTTATGATAGAAAAAAATGGATTatca                                          <  1:2065821/128‑4 (MQ=255)
                                                                                               a‑aaaaTAAAAGT‑AAGATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaac                                        <  2:150899/128‑6 (MQ=255)
                                                                                                   aaTAAAAGT‑AAGATTTGGATCAAACAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATaa                                     <  1:2931407/128‑1 (MQ=255)
                                                                                                    attataGT‑AAGATTTGGATTATTAAAAATTATTTAAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAAt                                    <  1:876223/123‑1 (MQ=255)
                                                                                                    aTAAAAGT‑AAGTTTTTTATCTAACAAAATTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTTCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaactaat                                    <  2:750411/128‑10 (MQ=255)
                                                                                                     tataaGT‑AAGATTTGGATTAAATATAAATATATAAATATTATT‑ATATTAAATAGTTTAGTTGAGTTTTAAATTTGCTTATATAGTACTAAGGATTTTATGATAGATAAAATTGGATTAGTTGATAATc                                   <  1:1951185/125‑1 (MQ=255)
                                                                                                      aaaaGT‑AAGATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGTAATTTATGATAGAAAAAAATGGATTAGGTGATAATcc                                  >  1:2364571/1‑128 (MQ=255)
                                                                                                      aaaaGT‑AAGATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                                  <  2:330976/128‑1 (MQ=255)
                                                                                                      aaaaGT‑AAGATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                                  >  1:2183904/1‑128 (MQ=255)
                                                                                                      aaaaGT‑AAGATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGCAATTTATGATAGAAAAAAATGGATTAGTTCTTAATcc                                  >  1:719254/1‑128 (MQ=255)
                                                                                                          gT‑AAGATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttt                              >  1:918389/1‑128 (MQ=255)
                                                                                                           tatagttttGGTTGATCCAAATCTATATCAAAAAAATTAAAAAAAAATATTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATTATATAAAAAAATGGATTAGTTTATAATACAtt                               >  1:297318/7‑128 (MQ=255)
                                                                                                           t‑AAGATTTTGATCAACAAAAACTATATCAAAAAAATT‑AAAATAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttt                             <  2:282611/128‑1 (MQ=255)
                                                                                                           t‑AAGATTTGGATCAATAAATATTATATAAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttt                             <  1:3075499/128‑1 (MQ=255)
                                                                                                           t‑AAGATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttt                             <  2:2440828/128‑1 (MQ=255)
                                                                                                           t‑AAGATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTAAAATCTGCATATATATTACAAAGGAATTAATTATATAAAAAAATCTATTAGTTTATAATAAAtttt                             >  1:2527770/1‑128 (MQ=255)
                                                                                                             taGATTTGGATCAATCAAAACTATATCAATAAATTT‑ATAAAAATTTGTTTAGTTGAGTTTCAAATCTTCATATATAGTACAAAGGAATTTATGAAAGAAAAAAATGGATTAGTTGATAATCCAttttt                            <  1:1652863/127‑1 (MQ=255)
                                                                                                             attaTTTGGATCAACCAAAAATATATCAAAAAAATT‑AAAAAAAATAGTTTTGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttttt                            <  1:3201820/125‑1 (MQ=255)
                                                                                                             aaGATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttttt                            >  2:3075185/1‑128 (MQ=255)
                                                                                                              aGATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt                           >  2:297966/1‑128 (MQ=255)
                                                                                                              aGATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAAAGGATTAGTTGATAATCCAtttttt                           >  2:3031781/1‑128 (MQ=255)
                                                                                                              aGATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGAATATATAGAACAAAGGAATTTATGATAGAAAAAAATGGTTTATTTGATAATCAAattttt                           >  1:2112104/1‑128 (MQ=255)
                                                                                                               gATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATTGTACAAAGGAATTTATGATACAAAAAAATGTATTAGATGATAATCAATTTTTTa                          >  1:532759/1‑128 (MQ=255)
                                                                                                                aTTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGTAATTTATGATAGAAAAAAATGTATTAGTTGATAATCCATTTTTTaa                         >  1:2885395/1‑128 (MQ=255)
                                                                                                                  ttGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAtt                       <  1:1003771/128‑1 (MQ=255)
                                                                                                                  ttGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAATAGTTGATAATCCATTTTTTAAtt                       >  2:1332907/1‑128 (MQ=255)
                                                                                                                   tGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAttt                      >  1:2816068/1‑128 (MQ=255)
                                                                                                                     gataaaaaaaaaCTATATTAAAAAAATT‑AAAATAAATATTTTAGTTGAGTTTCTAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTg                    <  2:1085424/120‑1 (MQ=255)
                                                                                                                     gATCAACCAAAACTATATATAAAAAATT‑AAAAATAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTg                    <  2:932792/128‑1 (MQ=255)
                                                                                                                     gATAAACAAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTg                    <  2:2411749/128‑1 (MQ=255)
                                                                                                                        cAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGttt                 >  1:837045/1‑128 (MQ=255)
                                                                                                                          aCCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATGGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTttat               >  1:1752366/1‑128 (MQ=255)
                                                                                                                           caaaaaCTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTttatt              <  2:2476205/126‑1 (MQ=255)
                                                                                                                            aatatcTATATTAATAAATTT‑TATAAAATTAGTTTAGTTGAGTTTCATATATGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTttatta             <  1:1340940/123‑1 (MQ=255)
                                                                                                                             ttatatatataATAAATTTT‑ATAATAAATAGTTTAGTTGATTTTATAATCTGCATATATATTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTaa            <  1:482127/123‑1 (MQ=255)
                                                                                                                             aaaaCTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTaa            >  1:2991949/1‑128 (MQ=255)
                                                                                                                               aaCTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAat          >  2:1980273/1‑128 (MQ=255)
                                                                                                                                aCTATATCAAAAAAATTAAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAat          >  2:106416/1‑128 (MQ=255)
                                                                                                                                  tttatTAAATATATT‑AAAATAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAATGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAattat       <  1:202190/126‑1 (MQ=255)
                                                                                                                                  tataTCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTATTTAATTTTTTTTATTAAattat       >  1:1263691/1‑128 (MQ=255)
                                                                                                                                   atatAAATAAAATT‑AAAATAAATAGTTTAGTTGAGTTTCTAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAattatt      <  2:2907637/128‑1 (MQ=255)
                                                                                                                                    tatCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAAttatta     >  2:1855447/1‑128 (MQ=255)
                                                                                                                                     atCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                                                         <  2:2850063/75‑1 (MQ=255)
                                                                                                                                      tCAAAATAATT‑AAAATAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAATTATTAAg   <  1:1176762/128‑1 (MQ=255)
                                                                                                                                      tCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAATTATTAAg   <  1:2501353/128‑1 (MQ=255)
                                                                                                                                       cAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGGTAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAATTATTAAGc  >  1:2584145/1‑128 (MQ=255)
                                                                                                                                       cAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAATTATTAAGc  >  1:1031208/1‑128 (MQ=255)
                                                                                                                                       |                                                                                                                                
CCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑CTTG‑‑‑‑‑TTTTTTTTTTTTTTTTGT‑A‑AAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAATTATTAAGC  >  CP016816/203827‑204079

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑