Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816165,3030CA35.5% 4889.3 / inf 2847intergenic (+267/‑275)JCVSYN2_00665/JCVSYN2_00670tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser
Reads supporting (aligned to +/- strand):  ref base C (557/1206);  new base A (832/139);  total (1498/1349)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 2882 total aligned reads displayed.

TAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGA  >  CP016816/165174‑165430
                                                                                                                                  |                                                                                                                                
    actaTTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTATTTA‑TTTTTTTTTATaa                                                                                                                               >  2:1128387/1‑128 (MQ=255)
       attatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTTTAAAAAAT‑‑TTCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTA‑TTTTGTTGTCTAAGTAt                                                                                                                           <  2:4129709/128‑1 (MQ=255)
         tatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTAGTTA‑TTTTTTTTTATAATTAta                                                                                                                          >  2:4718433/1‑127 (MQ=255)
          ttttttttATATATTTTTTTTTTATTTAAATTTTTAAAAAATTTATTTTAAATTTTAAAAAATTTCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTA‑TTTTGTTGTCTAAGTAT‑c                                                                                                                         <  2:2800559/125‑1 (MQ=255)
          ttattttttTATATTTTTTGTTTATTCAAATTTTTAAAAAATTTATTTTTACTTGTTAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTA‑TTTTGTTGTCTAAGTAT‑Ct                                                                                                                        <  1:7163242/125‑1 (MQ=255)
                ttATATATTTTTTGTTTATTAAAATTTTTAAAAAATTAATTTTAAATTGT‑AAAAATA‑ATGTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTA‑TTTTGTTGTCTAAGTAT‑CTaaaaaaa                                                                                                                 <  2:4999792/128‑1 (MQ=255)
                    ttatTTTTTTTATATTCAAATTTTTAAAAAATTAATTTTAAATTTTAAAAAATA‑‑TTTTTTTTTTTTTTTTTTTATAATTGAAATATAAATTTTAGGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGa                                                                                                             <  1:3139609/127‑1 (MQ=255)
                         ttttGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTAAAAT‑TAAATATAATATTTAAGTA‑TTTTTTTTTATAATtaa‑aaataaaaataaaaaaca                                                                                                        >  2:1713631/1‑125 (MQ=255)
                          ttttttattcaaaaTTTTTAAA‑AAATAATTTTAAATTTTAAAAAAT‑‑TTGTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGaaa                                                                                                      <  1:7319467/117‑1 (MQ=255)
                           tttttattttaaaTTTTTAAAAATTTATTTTTAATTTTTAAAAAATA‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGaaa                                                                                                      <  1:4443131/118‑1 (MQ=255)
                            ttatatttaaaaTTTTTAAAAATATATTTTTAATTTTTAAAAAA‑ATC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGaaaa                                                                                                     <  1:824094/119‑1 (MQ=255)
                              tttttttaaaTTTTTTAAAAATTAATTTTTAATTTTAAAAAATTTATTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGaaaa                                                                                                     <  2:4889488/121‑1 (MQ=255)
                                 atGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGTTA‑TTTTGTTGTATAAGTAT‑CTAAAAAAATATAAAGGAAAAAatat                                                                                                >  1:6627458/1‑128 (MQ=255)
                                  tGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATTGAAATATAAATTTTATTTT‑TTTTGTTGTATAAGTAT‑ATAAAAAAATATAAAGGaaaaatatt                                                                                                >  2:7099091/1‑124 (MQ=255)
                                    cAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGTTA‑TTTTTTTTTATAATTTT‑ATAAAAAAATATAAATTAAAAAATAttt                                                                                              >  2:7701157/1‑127 (MQ=255)
                                    cAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTAAAATGAAAATATAAATTTTTGTTA‑TTTTTTTTTATAATTAT‑GAAAAAAAATAAAAAGAAAAAAAttttt                                                                                              >  2:3929420/1‑127 (MQ=255)
                                     aaaTTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTT‑‑TAATTAAAAAAAAAAATTTATTTA‑TTTTTTTTTATAATTAA‑AAAAAAAAAAAAAAAATaaaaaaaaattat                                                                                            >  1:2549299/1‑121 (MQ=255)
                                        ttttTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTT‑TATTGGAAATATAATTTTTAGGTT‑TTTTTTTGTATATTTTT‑ATAAAAAAATATAAAGGAAAAAATATTGTTaa                                                                                          >  2:3246315/1‑128 (MQ=255)
                                            taaaaaaTTAATTTTAATTTTTAAAAAATATC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGt                                                                                      <  1:4178729/127‑1 (MQ=255)
                                            taaaaaaTTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTTTAATGGAAATAAAATTTTTTGTTA‑TTTTTTTTTATAATTTT‑ATAAAAAAATATAAAGTAAAAAATTTTTTTAAAAg                                                                                       >  2:7353350/2‑128 (MQ=255)
                                            taaaaaaTTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGTTA‑TTTTTTTGTATAATTAT‑ATAAAAAAATATAAAGTAAAAAATATTGTTaaaata                                                                                      >  2:3417804/2‑126 (MQ=255)
                                             aaaaaaTTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTATTTTTTTTTAAAATCTAAAAAAAAATTTTAATAA‑TATTTTTTTCTAATTAT‑ATAAAAAAATAAAAATCAAAAAATTTTATaaaattaa                                                                                     >  2:5156142/1‑124 (MQ=255)
                                               aaaattaattTTAAATTTTAAAAAATAG‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATa                                                                                  <  2:29182/126‑1 (MQ=255)
                                                aaattaattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATTGAAAAATAAATTTTAGTTA‑TTTTTTTTTAAAATTTT‑AAAAAAAAATATAAATTAAAAAATTTTTTTAAATTTAAt                                                                                   >  2:1865800/2‑128 (MQ=255)
                                                aaattaattTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGTAAATTTAAATTTTATGTT‑TTTTTTTTTATAATTAT‑ATAAAAAAATAGAAAGTAAAAAATATTTTTAAAATTaaaa                                                                                  >  1:2763204/2‑126 (MQ=255)
                                                aaattaattTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTA‑TTTTGTTGTCAAAGTAT‑CTAAAAAAATAGAAAGTAAAAAATATTGTTAAAAGTATTa                                                                                  >  2:5954064/2‑128 (MQ=255)
                                                 aattaattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTT‑‑TAATGTAAATAAAAATTTTATTTA‑TTTTTTTTTGTAATTAT‑ATAAAAAAATAGAAAGTAAAAAATTATTTTAAAATTAAAACt                                                                                >  1:7738137/1‑128 (MQ=255)
                                                  attaattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTT‑TAATGAAAAAAAAAATTTT‑TTTT‑TTTTTTTTTTTAAATATAAAAAAAAAATAAAAAAAAAAAAATATTATTAAaataaataaa                                                                                >  1:3637527/1‑126 (MQ=255)
                                                  attaattTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGGAAATAAAAATTTTAGGTA‑TTTTGTTGTCTAAGTAT‑CAAAAAAAATAAAAATGAAAAAATATTTTTAAAAGTAATAca                                                                                >  1:164380/1‑127 (MQ=255)
                                                  attaattTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTAAATTGTAAAAATAAATTTTAGGTA‑TTTTTTTGTATAATTAT‑AAAAAAAAATAAAAAGTAAAAAATATTTTTAAAAttattaat                                                                                >  2:198486/1‑126 (MQ=255)
                                                  attaattTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTATTATAATGGAAATATAAATTTTAGGTA‑TTTTGTTTTATAAGTAT‑CTAAAAAAATATAAAGGAAAAAATATTTTTAAATTTAATaat                                                                                >  1:5374724/1‑126 (MQ=255)
                                                   ttaattTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTAAAATAAAAAAAAAAATTATAAATA‑TTTTATTTAATAAGTAT‑AAAAAAAAATATAAAAAAAAAAAAAAT‑TTAAAAATaaaaaaaa                                                                              >  1:3758849/1‑122 (MQ=255)
                                                     aattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTTTAAATGAAATAAAAATTTAAGTTA‑TTTTTTTTAAAAAATAA‑AAAAAAAAATAAAAAGAAAAAAATATATTTAAAATtaataataa                                                                              >  2:6220375/1‑128 (MQ=255)
                                                          taaattttAAAAAATA‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAattatt                                                                       <  2:6679624/121‑1 (MQ=255)
                                                          gAACTTTTAAAAAATTGC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTA‑TTTTGTTGTCTAAGCAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAattat                                                                        <  2:6989055/128‑1 (MQ=255)
                                                           aaCTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTAATAATTGAAAAATAAATTTAAGTAA‑TTTTTTTTTATAATTAT‑AAAAAAAAAAAAAAAAAAAAAAAAAATTTTAAAAATAAAAAAAAAattatt                                                                       >  1:4599916/1‑128 (MQ=255)
                                                           aaCTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTATGTA‑TTTTGTTTTATAAGTAA‑ATAAAAAAATATAAAGTAAAAAATTTTTTTAAAATTAATAAAAAATTAAttt                                                                      >  2:2092655/1‑128 (MQ=255)
                                                           aaCTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAATTATAAATTTTAGTTA‑TTTTTGTGTCTTAGTTT‑CTTAAAAAATAGAAAGGATAAATTATTGTTATAAGTAATACTAAAATTAttt                                                                      >  2:6080479/1‑128 (MQ=255)
                                                            aCTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGTAATTAAAAATTTTTGGTT‑TTTTGTTGTAAAAGTTA‑ATAAAAAAATAAAATGTAAAAAATATTGTTAAATTTAAAAATAAAAtttttt                                                                      >  1:2955503/1‑128 (MQ=255)
                                                             attttAAAAAATTTTTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTAttt                                                                      <  2:721413/124‑1 (MQ=255)
                                                              ttGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTTAAATTAAAAAAAAAATTTTTTTTA‑TTTT‑TTTTAAAAATAA‑AAAAAAAAATTAAAAAAAAAAAAAATTTTTAAAAATAAAAAAAAAAATAtttta                                                                    >  1:2197880/1‑126 (MQ=255)
                                                              ttGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGAAAATTAAAATTTTAGTTA‑TTTTTTTTTATAATTTT‑ATAAAAAAATATAAAAAAAAAAAAATTTTTAAAAATAAAAATAAAATTATTTAAt                                                                   >  1:7871938/1‑128 (MQ=255)
                                                                 tAAAAAATATC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAAGTA‑TTTTTTTGTATATTTTT‑AAAAAAATATAAAATTTTAAAAATATTTTTAAAATAAATAATAAAA‑TATTTaaattt                                                                >  2:378827/1‑124 (MQ=255)
                                                                 tAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATATTTGAAA‑ATATAATTTATTTATTTTTGTTTTTTAATAAT‑GTAAAAAAATATAAAGTAAAAATAATTATTAAAAGTATTAAAAAAATTATTTAATGt                                                                 >  2:6430106/1‑128 (MQ=255)
                                                                   ttaaaaaatttcttttttttttttttttATAATGGAAATATAAATTTTAGGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGtt                                                                <  2:1554219/116‑1 (MQ=255)
                                                                   tataattattttttttttttttttttttATAATTGAAATATAAATTTTATGTA‑TTTTGTTGTCTGAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGtt                                                                <  1:1127431/119‑1 (MQ=255)
                                                                   taaatatattttttttttttttttttttATAATGGAAATATAAATTTTAGGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGtt                                                                <  2:6566127/119‑1 (MQ=255)
                                                                   taaaattattttttttttttttttttttATAATGGAAATATAAATTTTATGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGtt                                                                <  2:4262732/119‑1 (MQ=255)
                                                                      aaattttttttttttttttttttttATAATGGAAATATAAATTTTATGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaat                                                             <  2:2532702/122‑1 (MQ=255)
                                                                      aaaatttttttttttttttttttttATAATGGAAATATAAATTTTAGGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaat                                                             <  1:68004/122‑1 (MQ=255)
                                                                      aaTAGCTTTTTTTTTTTTTTTTTT‑‑TAATTTAAATATAAATTTTAGTTA‑TTTTGTTTAATAAGTAA‑AAAAAAAAATATAAAGTAAATAATATTTTTAAAATTAATAATAAAATTTTTTAATTttaatta                                                           >  1:4939837/1‑128 (MQ=255)
                                                                       aTAGCTTTTTTTTTTTTTTTTTTT‑TAATGGAAATTAAATTTTTTGTTT‑TTTTTTTTTATATTTAT‑ATAAAAAATTATAATGTAAAAATTATTGTTAAATTTATAAATAAAATTATTTAATTttaatta                                                           >  2:3110852/1‑128 (MQ=255)
                                                                       aTAGC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAATTTTTAGTTT‑TTTTGTTTTATAATTAT‑ATAAAAAAATAAAAAGGAAAAAATATTTTTAAAATAAAAAATAAAATTTTTTAATTttattaa                                                           >  2:2672719/1‑124 (MQ=255)
                                                                        atagtttttttttttttttttttATAATGGAAATATAAATTTTAGGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatta                                                           <  1:1784699/124‑1 (MQ=255)
                                                                        aatttttttttttttttttttttATAATTGAAATATATATTTTAGGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatta                                                           <  1:513580/124‑1 (MQ=255)
                                                                        aatagctttttttttttttttttATAATGGAAATATAAATTTTAGTTT‑TTTTTTTTTCTAATTAT‑ATAAAAAAATAAAAAGAAAAAAAAATTTTTAAAATTATAAATAAAATTATTAAATTttattaa                                                           >  1:7055062/7‑124 (MQ=255)
                                                                            gctttttttttttttttttATAATGGAAATATAAATTTTATGTA‑TTTTGTTTTATAAGTAT‑ATAAAAAAATATAAAGTAAAAAATATTTTTAAAATTAATAATAAAATTATTTAATGTTAATTaaaaa                                                       >  2:2269790/3‑127 (MQ=255)
                                                                             ttttttttttttttttttATAATGGAAATATAAATTTTAGGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACt                                                      <  1:1000140/128‑1 (MQ=255)
                                                                             ttttttttttttttttttATAATGGAAATATAAATTTTAGGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACt                                                      <  2:886417/128‑1 (MQ=255)
                                                                               ttttttttttttttttAAAATGAAAAAAAAAATTTTAGTTA‑TTTTTTTTAATAATTAA‑AAAAAAAAAATAAAATTAAAAAAAATTATAAAAATTAAAAATAAATATATTAATTTTTAATAAAAAATta                                                    >  1:1280666/1‑128 (MQ=255)
                                                                                tttttttttttttttATAATGGAAATATAAATTTTAGGTT‑TTTTTTTGTATATTTTT‑ATAAAAAAATATAAAGGAATAAATTTTTTTAATATTATTAATAAAATTTTTTAATGTTAATTAAAAATtaa                                                   >  2:1339863/1‑128 (MQ=255)
                                                                                    tttttttttttATAATTGAAATATAAATTTTAGGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTtaaataa                                               <  2:7942869/128‑1 (MQ=255)
                                                                                    tttttttttttATAATGGAAATATAAATTTTAGGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTtaaataa                                               <  1:6037327/128‑1 (MQ=255)
                                                                                        tttttttATAATGGAAATATAAATTTTAGGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACa                                           <  1:993245/128‑1 (MQ=255)
                                                                                         ttttttATTATGGAAATATAAATTTTAGGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACAt                                          <  1:2077243/128‑1 (MQ=255)
                                                                                               ataATGGAAATATAAATTTTAGGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAAtt                                    <  2:4020677/128‑1 (MQ=255)
                                                                                                  aTGGAAATATATATTTTATGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATtaat                                 <  1:2460398/128‑1 (MQ=255)
                                                                                                    ggAAATATAAATTTTAGGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATtaataa                               <  1:557666/128‑1 (MQ=255)
                                                                                                     gatatatAAATTTTATGTA‑TTTTTTTGTCTAAGTAT‑ATTAAAAAATAGAAAGGAAAAAATTTTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAATTTTATaaa                              <  1:750133/125‑1 (MQ=255)
                                                                                                     gAAATATAAATTTTAGGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATaaa                              <  1:6942989/128‑1 (MQ=255)
                                                                                                     gAAATATAAATTTTAGGTA‑TTTTGTTGTATAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATaaa                              <  2:5340905/128‑1 (MQ=255)
                                                                                                       aaTATAAATTTTAGGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATaaaaa                            <  2:7492659/128‑1 (MQ=255)
                                                                                                       aaTATAAATTTTAGGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATaaaaa                            >  1:1954566/1‑128 (MQ=255)
                                                                                                         tataAATTTTATGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATa                          <  2:4586280/128‑1 (MQ=255)
                                                                                                           taAATTTTAGGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGt                        >  1:6156162/1‑128 (MQ=255)
                                                                                                             aaTTTTATGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAATGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGttt                      <  2:6843036/128‑1 (MQ=255)
                                                                                                             aaTTTTAGTTA‑TTTTGTTGTATAAGTAT‑CTAAAAAAATAGAAATGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATAAATAAAAATAGttt                      <  2:7591128/128‑1 (MQ=255)
                                                                                                             aaTTTTAGGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGttt                      >  2:5636516/1‑128 (MQ=255)
                                                                                                             aaTTTTAGGTA‑TTTTGTTGTATAAGTAT‑CTAAAAAAATAGAAATGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGttt                      <  1:5771359/128‑1 (MQ=255)
                                                                                                              aTTTTAGGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTtta                     >  1:6260280/1‑128 (MQ=255)
                                                                                                              aTTTTAGGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTtta                     >  2:4391405/1‑128 (MQ=255)
                                                                                                              aTTTTAGGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTtta                     >  1:6446977/1‑128 (MQ=255)
                                                                                                              aTTTTAGGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTtta                     >  2:239432/1‑128 (MQ=255)
                                                                                                               ttttAGGTA‑TTTTGTTGTATAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTttat                    <  1:3931970/128‑1 (MQ=255)
                                                                                                                tttAGGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTttatt                   <  1:4304945/128‑1 (MQ=255)
                                                                                                                tttAGGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTttatt                   <  2:3576058/128‑1 (MQ=255)
                                                                                                                       a‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTaa            <  1:2636249/128‑1 (MQ=255)
                                                                                                                       a‑TTTTGTTGTCTAAGTAT‑CT‑AAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAt           <  1:329797/128‑1 (MQ=255)
                                                                                                                         ttttGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAt           <  1:2338172/128‑1 (MQ=255)
                                                                                                                         ttttGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAt           >  1:7624079/1‑128 (MQ=255)
                                                                                                                         ttttGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATAAAACTAAt           >  1:4777383/1‑128 (MQ=255)
                                                                                                                         ttttGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGCTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAt           >  2:5863995/1‑128 (MQ=255)
                                                                                                                           ttgttgTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAATTAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAttt         >  2:5505863/1‑128 (MQ=255)
                                                                                                                           ttgttgTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAttt         >  2:7843833/1‑128 (MQ=255)
                                                                                                                           ttgttgTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGATAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAttt         >  1:4072526/1‑128 (MQ=255)
                                                                                                                           ttgttgTATAAGTAT‑ATAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAttt         <  1:3469910/128‑1 (MQ=255)
                                                                                                                            ttttgtCTAAGTAT‑ATAAAAAAATAGAAATGAAAAAATATTGTTAATAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTc        <  2:1455257/126‑1 (MQ=255)
                                                                                                                            tgttgtCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTc        >  2:3679769/1‑128 (MQ=255)
                                                                                                                              ttgtATAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGt      <  1:1467526/128‑1 (MQ=255)
                                                                                                                                  cTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGa  <  1:5916756/128‑1 (MQ=255)
                                                                                                                                  |                                                                                                                                
TAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTA‑TTTTGTTGTCTAAGTAT‑CTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGA  >  CP016816/165174‑165430

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑