Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4770CA41.4% 731.6 / inf 809intergenic (+255/‑420)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base C (297/172);  new base A (88/244);  total (386/423)
Fisher's exact test for biased strand distribution p-value = 2.81e-25
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 901 total aligned reads displayed.

AAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTT‑‑‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATAT  >  CP016816/202350‑202605
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aagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAc                                                                                                                                        <  1:5762943/128‑1 (MQ=255)
 agtagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACa                                                                                                                                       <  2:7037442/128‑1 (MQ=255)
  ttagtGAAGTTAGTGTAAATATTAGATTTAAGTTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACaa                                                                                                                                      <  1:3749131/127‑1 (MQ=255)
   tagtTAAGTTAGTGTAAATAATAGAGTTAATTATAATTAAAAAACCATAAACATAAAAAATATTATAATTTATAAAATCTAAATCAATAATATAATATAATAATCTACACAAATAaaaaaaaaaaaaa                                                                                                                                     >  1:3301261/1‑127 (MQ=255)
   tactGAATTTATTGTAAATAATAAATTTAAGGTTAATTAAAATACCATAAAATTAATAAATCATATAAAGTATATACTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAt                                                                                                                                     <  2:5631565/125‑1 (MQ=255)
    agtGAATTTAGTTTAAATAATATAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATc                                                                                                                                    <  2:240256/128‑1 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTATATAATCTTGATCTATTTTTTTATTTTATTATCTTAACAAATAAAAAAAAAAAAAta                                                                                                                                    >  1:2845606/1‑127 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAaaaaaaaaaaaaaa                                                                                                                                    >  1:7858630/1‑126 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATc                                                                                                                                    <  1:6913042/128‑1 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTAATCTATTATTTTATTTATTTATCTTCACAAATAaaaaaaaaaaaaac                                                                                                                                    >  1:3588718/1‑126 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTACTGATCTATTTTTTTATTTGTTTATATTCACAAATAAAAAAAAAACAAta                                                                                                                                    >  1:3910336/1‑127 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATATATATCCTCTTTATCTATTATATTATTATATTATATACACAaaaaaaaaaaaaaaaaaa                                                                                                                                    >  1:4310627/1‑126 (MQ=255)
     gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTATATACTCATTATCTAATAATTTATTTATATATCTTAAAAAATAaaaaaaaaaaaaaaa                                                                                                                                   >  1:2452/1‑125 (MQ=255)
     gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAtac                                                                                                                                   >  1:749589/1‑126 (MQ=255)
      tGAAGTTAGTGTAAATAATAGAGTTAAGTTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTAAATTATTATTTATTTATCTTAACAAATAAAAAAAAAACAAtaaa                                                                                                                                  >  2:2537103/1‑125 (MQ=255)
      tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATccc                                                                                                                                  <  2:2829274/128‑1 (MQ=255)
       gAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATATAGATCATCATGATCTAATTATTTATTTTTTAATCTTCACAAATAAAAAAAAAACAAtaaac                                                                                                                                 >  2:2217135/1‑124 (MQ=255)
         aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATcacata                                                                                                                               >  2:6588472/1‑123 (MQ=255)
         aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCTTGATCTAATTTTTTATTAGTATATCTTCACAAATAAAAAAAAAACAATcaaata                                                                                                                               >  2:2104038/1‑123 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAAACCCtta                                                                                                                              >  2:6839653/1‑127 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAAATTAATAATTCTTATAATGTATATAATCGTGATCTATTTTTTTATTTGATTATATTAAAAAATAAAAAAAAAAAAATcaaatta                                                                                                                              >  2:7276805/1‑122 (MQ=255)
           ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTATATTTTTTTATCTTCACAAATAAAAAAAAAACaaaacccaaaa                                                                                                                             >  1:4991077/1‑119 (MQ=255)
           ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCttaa                                                                                                                             >  2:7671588/1‑126 (MQ=255)
           ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAACAATCCCCttaaa                                                                                                                            >  1:7736444/1‑125 (MQ=255)
            tAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTAGTTTATCTTCACAAATAaaaaaaaaaaaaaaacaataaa                                                                                                                            >  2:7454319/1‑118 (MQ=255)
             aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCATCGTGATCTATTTTTTTATTTGTTTATATTCACAAATAAAAAAAAAACAAtaaaataaaaa                                                                                                                           >  1:1020966/1‑118 (MQ=255)
             aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAAAcccaataaaa                                                                                                                           >  1:6345304/1‑121 (MQ=255)
             aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACAATAAACTTAATAATTCTTATAATTTAGATCCTCTATATCTATTTTTTTATTTGTTAATCTTAACAAATAaaaaaaaaaaaaaaaaaataaaa                                                                                                                           >  1:1645715/1‑117 (MQ=255)
                    ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAATAAAAAAAAAACAATCACC‑‑‑‑‑‑Ttaaaaattaaaa                                                                                                            >  2:6390793/1‑128 (MQ=255)
                        taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGCTCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAAACCATT‑‑‑‑AAaaataaataaaaa                                                                                                           >  1:7113036/1‑128 (MQ=255)
                        taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTATATCTATATTTTTATTAATTTATCATCACAAATAAAAAAAAAACAAAACACTa‑‑‑‑aaaaaaaaaaaaaaa                                                                                                          >  1:4736226/1‑128 (MQ=255)
                        taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGTGATCTATTTTTTTATTTGTATATCTTCACAAATAAAAAAAAAACAAT‑‑CAAA‑‑‑‑TTAAAAATTaaaaaaaa                                                                                                        >  2:6105752/1‑128 (MQ=255)
                         agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACaa                                                                                                                                      >  2:3483005/1‑105 (MQ=255)
                         agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATATGTTTATCTTCACAAATAAAAAAAAAACAAACACC‑‑‑‑‑‑TTAAAAATTaaaaaaaaa                                                                                                       >  2:6657448/1‑128 (MQ=255)
                           agTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑‑‑‑‑TAAAAAATtaaaaaaaaaaa                                                                                                    >  1:680555/1‑128 (MQ=255)
                             ttATGGTTAATTAAAAAACAATAAAAATAATAATAATAAAAATTTAAAACCTCGTTATATATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑‑‑‑‑TTAAAAATTaaaaaaaaaaaaa                                                                                                   <  2:1682705/128‑1 (MQ=255)
                             ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATACCC‑‑‑‑‑‑TTAAAAATTaaaaaaaaaaaaa                                                                                                   >  1:1877126/1‑128 (MQ=255)
                             ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCCCTT‑‑‑‑‑‑‑AAAAATaaaaaaaaaaaaaa                                                                                                  >  1:1980257/1‑128 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTATTTATCTTCACAAAAAAAAAAAAAACAAAACAAAT‑‑‑‑aaaaaaaaaaaaaaaaaaaaaa                                                                                                   >  2:3923249/1‑128 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTATTATTTGTTTATCTTAACAAATAAAAAAAAAACAAAACC‑‑‑‑‑‑‑ATAAAAAATaaaaaaaaaaaaaaaa                                                                                                >  2:5899224/1‑128 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAACCAAACCCC‑‑‑‑‑‑TTAAAAATTaaaaaaaaaaaaaaa                                                                                                 >  1:6997168/1‑128 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCt                                                                                                                                <  1:1717928/105‑1 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑‑‑‑‑TTAAAAATTaaaaaaaaaaaaaaa                                                                                                 >  1:6572512/1‑128 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑‑‑‑‑TTAAAAATTaaaaaaaaaaaaaaa                                                                                                 >  2:7350218/1‑128 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCACTT‑‑‑‑‑‑‑AAAAATaaaaaaaaaaaaaaaa                                                                                                >  2:6323030/1‑128 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAAACCATT‑‑‑‑‑‑‑AAAAATaaaaaaaaaaaaaaaa                                                                                                >  2:4204871/1‑128 (MQ=255)
                                atgTTATTTAAAATAACATTAAATTAATAAATATTATAATTTATATAATAGTTATATATTTTTTTTTTTGTTTATTTTAAAAAATAAAAAAAAAACAATACCC‑‑‑‑‑‑TTAAAAATTaaaaaaaaaaaaaaaa                                                                                                <  2:7191659/126‑1 (MQ=255)
                                aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑‑‑‑‑TTAAAAATTaaaaaaaaaaaaaaaa                                                                                                >  1:7278089/1‑128 (MQ=255)
                                aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTAACAAATAAAAAAAAAAAAAAAAC‑‑A‑‑‑‑TTAAAAATTaaaaaaaaaaaaaaaa                                                                                                >  2:481768/1‑128 (MQ=255)
                                aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTAATTTTTTATTTGATTATCTTAACAAATAAAAAAAAAAAAATACAAAT‑‑‑‑‑‑‑AAAAATaaaaaaaaaaaaaaaaa                                                                                               >  1:301466/1‑128 (MQ=255)
                                aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTAATTTTTTATTTCTTTATAATCACAAAAAAAAAAAAAAAAAT‑‑AAAA‑‑‑‑TAAAAAAATaaaaaaaaaaaaaaaa                                                                                                >  1:5252876/1‑128 (MQ=255)
                                 ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑‑‑‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                               >  1:7170968/1‑128 (MQ=255)
                                 ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACC‑‑‑A‑‑‑‑ATAAAAAATaaaaaaaaaaaaaaaaaa                                                                                              >  2:2918610/1‑128 (MQ=255)
                                 ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTCTTTATCTTCACAAATAAAAAAAAAAAAATCCC‑‑‑‑‑‑‑ATAAAAAATtaaaaaaaaaaaaaaaaa                                                                                              >  1:4533512/1‑128 (MQ=255)
                                 ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTATTTATCTTCACAAATAAAAAAAAAAAAA‑‑ACAAA‑‑‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                               >  2:6739631/1‑128 (MQ=255)
                                    taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTTTTTATCTTCACAAATAAAAAAAAAACAATCCCCAT‑‑‑‑Aaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                              >  1:5145788/1‑128 (MQ=255)
                                    taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAAATTCAAAAATAAAAAAAAAACAAACCCATT‑‑‑‑‑‑‑AAAAATaaaaaaaaaaaaaaaaaaaaa                                                                                           >  1:7393906/1‑128 (MQ=255)
                                       ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAATCCCC‑‑‑‑‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaa                                                                                          >  1:6609185/1‑127 (MQ=255)
                                        taaAAAACAAAAAAATTAAATAATTTTAAAATTTTTATCCTCGTTATATTTTTTTTTATTTGTTTTTATTCAAAAAAAAAAAAAAAACAATCCCC‑‑‑‑‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaactaaa                                                                                        <  1:1352927/128‑6 (MQ=255)
                                         aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAt                                                                                                                                     <  1:2151169/90‑1 (MQ=255)
                                          aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑‑‑‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                      >  1:2330528/1‑123 (MQ=255)
                                          aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑‑‑‑‑TAAAAAATTAAAAAAAAAAAAAAAAAAAAAATaaa                                                                                      >  1:7630759/1‑128 (MQ=255)
                                           aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCACC‑‑‑‑‑‑TTAAAAATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                     >  2:6936366/1‑128 (MQ=255)
                                            aTAACATAAAATTAAAAAATATTATAATGTATATCATCGTGATCTATTTTTTTATTTTTTTATCTTCAAAAATAAAAAAAAAACAATCCCC‑‑‑‑‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTaaaaa                                                                                    <  2:6238388/128‑1 (MQ=255)
                                              aaaaTAAAATTATTAATTATTATAATGTTTATTCTAGTTTTTTTTTTTTTTTTTTTTTTATTTTAAAAAATAAAAAAAAAAAAAACCCCTT‑‑‑‑‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAACTAAaaacaaa                                                                                <  1:812856/125‑1 (MQ=255)
                                               ccATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATATTTTTAAATGTTTATCTTCACAAATAAAAAAAAAACAAACCCC‑‑‑‑‑‑TTAAAAATTAAAAAAAAAAAAAAaaaaaacaaaaaaacac                                                                                 >  1:6737125/1‑127 (MQ=255)
                                               acATAAAAATTATAATTTTTATAAATTATTACATCTTTATTTAATTTTTTATTTTTTTATTTTTAAAAATAAAAAAAAAACAAACCCC‑‑‑‑‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                 <  2:7750944/127‑1 (MQ=255)
                                                     aattattaATTTTTATAATTTTTTTCCTTGTTATTTATTTTTTTATTTTTTTTTTTTTAAAAAAAAAAAAAAAAAAATCCCCT‑‑‑‑TAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                            <  1:980036/126‑1 (MQ=255)
                                                     aaataataaTTATTTAAATTTATATACATGTTATATATTTTTTTATTTGTTTAAATTCAAAAAAAAAAAAAAAAAAAAACCC‑‑‑‑‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                           <  2:1826877/125‑1 (MQ=255)
                                                            taatTATAAAAATTTATATCCACTTTATATATTTTTTTTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑‑‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTa                                                                    <  2:5460922/128‑1 (MQ=255)
                                                                tCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑‑‑‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACAAAAAACAAACACAATATATTaaaa                                                                 >  1:7671480/1‑128 (MQ=255)
                                                                             atactagTGATTTATTTTTTTATTTTGTTTTCTTCAAAAATAAAAAAAAAACAATCCCATT‑‑‑‑‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                   <  2:859759/122‑1 (MQ=255)
                                                                              tcatttttatttatttttttattttttTTTTTTAAAAAAAAAAAAAAAAAAAATTCCCTT‑‑‑‑AAAAAATAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                      <  2:6534841/117‑1 (MQ=255)
                                                                                   tttatatATTTTATTAATATTTTTTATTTAAAAATAAAAAAAAAAAAATACCCTT‑‑‑‑‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                             <  2:1478976/122‑1 (MQ=255)
                                                                                   gTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTT‑‑‑‑‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAACACTATTTATTAAAATTACCTATTATACAACatttt                                            >  1:6095864/1‑128 (MQ=255)
                                                                                    ttctCTTTTTTTTTATTTGTTTATATTAAAAAAAAAAAAAAAAAAAATCCCC‑‑‑‑‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                             <  1:872231/125‑1 (MQ=255)
                                                                                    tgtattatttttttattttttTATAATAAAAAAAAAAAAAAAAAAAAACCCCT‑‑‑‑TAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                              <  1:5984946/123‑1 (MQ=255)
                                                                                     tttatatttttttattttttTAAATTAAAAAAAAAAAAAAAAAAAATACC‑‑A‑‑‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                           <  2:264557/124‑1 (MQ=255)
                                                                                     tttatATTTTTTTAATTTTTTATAATAAAAAATAAAAAAAAAAAAATACCCTT‑‑‑‑‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                           <  2:1235505/124‑1 (MQ=255)
                                                                                     tatatatttttttattttttTTTATTAAAAAATAAAAAAAAAAAATCACCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                 <  2:7109939/124‑1 (MQ=255)
                                                                                     cttttATTTTTTTTTTTTTTTATATAAAAAAAAAAAAAAAAAAAAAACCCAAT‑‑‑‑‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttat                                          <  1:6389410/124‑1 (MQ=255)
                                                                                          tttttttttttttttTATTATTAAAAAAAAAAAAAAAAACAATCCCCTT‑‑‑‑‑‑‑AAAAATTAAAAAATAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                       <  1:6501832/127‑1 (MQ=255)
                                                                                           ttttttttttttttTATTTTAAAAAATTAAAAAAAAAAAATTAC‑‑A‑‑‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                      <  2:4593821/128‑1 (MQ=255)
                                                                                            ttttttttttttttAAATATAAAAAAAAAAAAAAAAAAAAACCCA‑‑‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                      <  2:6467121/128‑1 (MQ=255)
                                                                                            ttttttatttttttatTTTAAAAAATAAAAAAAAAAAAAAACCCAT‑‑‑‑T‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                     <  2:1935571/128‑1 (MQ=255)
                                                                                             ttttttttttttTAAATTAAAAAAAAAAAAAAAAAAAAAACCC‑‑‑‑‑‑TTAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                    <  1:2706974/128‑1 (MQ=255)
                                                                                              ttttttttttttATTTTTAAAAATAAAAAAAAAAAAATTCCC‑‑‑‑‑‑TTAATAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                   <  2:3794508/128‑1 (MQ=255)
                                                                                               tttAATTTTTTATATTCACAAAAAAAAAAAAAAAAATTCCCTT‑‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                     <  2:2735731/128‑1 (MQ=255)
                                                                                                ttATTTTTTTATATTAAAAAATAAAAAAAAAAAAATACCC‑‑‑‑‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAAt                                 <  1:5916282/128‑1 (MQ=255)
                                                                                                   ttttttTATATTAAAAAAAAAAAAAAAAAAAATACC‑‑A‑‑‑‑ATAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                              <  2:4092905/128‑1 (MQ=255)
                                                                                                    ttttttATTTTAAAAAATAAAAAAAAAAAAAACCC‑‑A‑‑‑‑TAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                             <  2:5986244/125‑1 (MQ=255)
                                                                                                       ttttatataaacaAATAAAAAAAAAAAAAAACCC‑‑‑‑‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                           <  2:3153521/118‑1 (MQ=255)
                                                                                                       ttttataataacaAATAAAAAAAAAAAAAACCCC‑‑‑‑‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                           <  2:7888532/118‑1 (MQ=255)
                                                                                                       ttatatattaaaaaaTAAAAAAAAAAAAATAAC‑‑A‑‑‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                           <  2:5153600/116‑1 (MQ=255)
                                                                                                        tttaatataaccaaTAAAAAAAAAAAAATACCC‑‑‑‑‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                         <  1:6236655/116‑1 (MQ=255)
                                                                                                         ttaaataaaaaaaaaaaaaaaaaaaaATCCCC‑‑‑‑‑‑ATAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                         <  2:5275650/118‑1 (MQ=255)
                                                                                                          tatatttaaaaaTAAAAAAAAAACAATCACC‑‑‑‑‑‑ATAAAAAATAAAATAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                       <  1:5525896/119‑1 (MQ=255)
                                                                                                          tatatacaaaaataaaataAAAACAATAACATT‑‑‑‑‑‑‑AATAATATAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTGCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                       <  2:4991128/119‑1 (MQ=255)
                                                                                                                 taaaaTAAAAAAAAAAAAAACAC‑‑T‑‑‑‑TTAAAATATAAAAATAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata                <  1:4143593/126‑1 (MQ=255)
                                                                                                                             aaaaaCAATCCCCTT‑‑‑‑‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAATATATTTATTAAAATTAAATATTATACCACATTTTATTTTTAAAAAAAGAAATTTAAAAAataaatataaaaaa     >  2:7574996/1‑122 (MQ=255)
                                                                                                                                  |                                                                                                                                      
AAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTT‑‑‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATAT  >  CP016816/202350‑202605

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: