BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	202,485	0	T	.	76.4%	790.0 / inf	582	intergenic (+263/‑412)	JCVSYN2_00840/JCVSYN2_00845	hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand): ref base T (36/83); new base . (166/219); total (239/343)
Fisher's exact test for biased strand distribution p-value = 1.38e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.57e-01

Only 100 of 654 total aligned reads displayed.

AAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATAT  >  CP016816/202358‑202605

 atgttgtgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTAGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCtt                                                                                                                          <  1:6750446/123‑1 (MQ=255)

  gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCtta                                                                                                                         >  1:7708966/1‑127 (MQ=255)

  gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCACtta                                                                                                                         >  1:1661053/1‑127 (MQ=255)

   ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCtaaa                                                                                                                        >  1:7460853/1‑125 (MQ=255)

           aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATACACttaaaaattaaa                                                                                                                >  2:6284920/1‑118 (MQ=255)

            ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAAAAATTCTTATAATGTAGATCCTCGAGATCTATAATATAATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCACtaaaaaattaaaa                                                                                                               >  2:7631793/1‑116 (MQ=255)

             taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCACGTGATCTATTTTTTTATTATTTTATCTTAACAAATAAAAAAAAAAAAAACCAATTaaaaa‑aaaaaaa                                                                                                             >  1:5184790/1‑128 (MQ=255)

              aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCCC‑‑Ttaaa‑aattaaaaaa                                                                                                          >  1:6803396/1‑128 (MQ=255)

                     ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCAT‑‑‑AA‑AAATaaaaaaaaaaaaaa                                                                                                  >  1:6869045/1‑128 (MQ=255)

                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑ATAAA‑AATTaaaaaaaaaaaaaaa                                                                                                 >  1:1877971/1‑128 (MQ=255)

                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAAACCATT‑‑‑AA‑AAATaaaaaaaaaaaaaaaa                                                                                                >  2:4204871/1‑128 (MQ=255)

                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAA‑‑‑ACAAATAAA‑AAATtaaaaaaaaaaaaaaa                                                                                                >  1:3328846/1‑128 (MQ=255)

                        atgTTAATTAAAATAACAAAAAATTAATAATTAATAAAATTTAAAACAAATTTTAATATTTTTTTATTTTTTTATAATAACAAAAAAAAAAAAAAAAATACCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaa                                                                                                <  2:1813570/126‑1 (MQ=255)

                        aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTAACAAATAAAAAAAAAAAAAAAAC‑‑ATTAAA‑AAATaaaaaaaaaaaaaaaa                                                                                                >  2:7443005/1‑128 (MQ=255)

                        aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaa                                                                                                >  1:6240085/1‑128 (MQ=255)

                        aGGTTAATTAAAATAAAAAAAAATTAATAATTATTATAATTTAAATAATCCTTATCTATTTTTTTTTTTTTTTAACTTAAAAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaa                                                                                                <  2:7181077/128‑1 (MQ=255)

                         tgTTTATTAAAATAAAAAAAAATTTAAAAATATTATAATTTTTATCCTCGTTTTCTATTTTTTTATTTTTTTTTTTTAAAAAAAAAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaa                                                                                               <  1:707994/127‑1 (MQ=255)

                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAATAAAAAAAAAAAAATCACATAaaaaa‑aaaaaaaaaaaaaaaaaaa                                                                                                 >  1:2205350/1‑128 (MQ=255)

                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaa                                                                                               >  1:7170968/1‑128 (MQ=255)

                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaa                                                                                               >  2:6118701/1‑128 (MQ=255)

                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaa                                                                                               >  1:7880832/1‑128 (MQ=255)

                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATACC‑‑‑ATAAA‑AAATtaaaaaaaaaaaaaaaaa                                                                                              >  2:7067700/1‑128 (MQ=255)

                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCCC‑‑‑TAAA‑AAATtaaaaaaaaaaaaaaaaa                                                                                              >  1:1986118/1‑128 (MQ=255)

                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACC‑‑‑AATAAA‑AAATaaaaaaaaaaaaaaaaaa                                                                                              >  2:2918610/1‑128 (MQ=255)

                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAAACCATT‑‑‑AA‑AAATaaaaaaaaaaaaaaaaaa                                                                                              >  1:5385514/1‑128 (MQ=255)

                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAATCCAC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaa                                                                                              >  1:1117377/1‑128 (MQ=255)

                          gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaa                                                                                              >  1:6458367/1‑128 (MQ=255)

                           tttattaaAATAACATAAAATTAATAATTTTTATAATTTATTTACACGTTTTTTATTTTTTTTTTTTTTTTTTTTAAAAAATAAAAAAAAAAAAATACCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaa                                                                                             <  1:6383792/125‑1 (MQ=255)

                           ttaattaaAATAAAATAAAAATAAAAATTATTAAAATTTATAACCTCTTTATATATTTTTTTTTTTTTTTATATTAAAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaa                                                                                             <  2:905582/128‑1 (MQ=255)

                            taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAATAAAAAAAAAACAAT‑‑‑CAAATAAA‑AAATtaaaaaaaaaaaaaaaaaaaa                                                                                           >  1:435403/1‑128 (MQ=255)

                            taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCAAC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaaa                                                                                            >  2:1932902/1‑128 (MQ=255)

                            taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTAACAAATAAAAAAAAAAAAAAAAAC‑‑TTAAA‑AAATaaaaaaaaaaaaaaaaaaaa                                                                                            >  2:4985502/1‑128 (MQ=255)

                            taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTATATTTTTTTATCTTCACAAATAAAAAAAAAAAAATCCC‑‑‑ATAAA‑AAATtaaaaaaaaaaaaaaaaaaaa                                                                                           >  1:7597748/1‑128 (MQ=255)

                            taattaaAATAAAATTAAATTAAAAATTAATAAAATTTATATACACGTTTTATATTTTTTTTTTTTTTTATATTAAAAAAAAAAAAAAAAAAAAACCCC‑‑ATAAA‑AAATaaaaaaaaaaaaaaaaaaaa                                                                                            <  2:6737112/128‑1 (MQ=255)

                             aattaaAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTTATCTATTTTTTTATATGTTTAACTTCACAAATAAAAAAAAAAAAAAAACATTaaaaa‑aaaaaaaaaaaaaaaaaaaaaaa                                                                                             >  2:1044635/1‑128 (MQ=255)

                              attaaAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAA‑‑ACAAATTAAA‑AATTaaaaaaaaaaaaaaaaaaaaaa                                                                                          >  2:2534661/1‑127 (MQ=255)

                               ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaaaaaa                                                                                         >  2:6043154/1‑126 (MQ=255)

                               ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGAACTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaaaaaa                                                                                         >  1:5925904/1‑126 (MQ=255)

                               ttaaAATACCATAAACTAAATAATTCTTATAATGTAGATACTAGTGATCTATTTTTTTATTTTTTTATATTCACAAATAAAAAAAAAACAA‑‑AACAATAAAA‑AATTaaaaaaaaaaaaaaaaaaaaaaa                                                                                         >  1:7267448/1‑126 (MQ=255)

                                taaaataaaataaaaAAAATAATTATTAAAATTTATATCATATTTTTATATTTTTTTAATTTTTAATATTAAAAAAAAAAAAAAAAAAAAAACCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTa                                                                                        <  2:3876802/128‑1 (MQ=255)

                                  aaaaacaaaaaaaTTAATAAATATTATAATTTTTATTCTCGTTATTTATTTTTTTATTTTTTTTTCTTTAAAAAAAAAAAAAAAAAAAATACC‑CTTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTaa                                                                                       <  1:6342084/119‑1 (MQ=255)

                                  aaaaaaaaaaaaaTTAATAATTATTATAATTTTTTTCATTGTTATTTTTTTTTTTATTTTTTTTTATTAAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTaaa                                                                                      <  1:7645157/119‑1 (MQ=255)

                                   aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCACC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAA‑Taaaaa                                                                                    >  1:3769153/1‑128 (MQ=255)

                                   aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTAACAAATAAAAAAAAAACAAT‑‑CCAATTAAA‑AATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                     >  1:4607547/1‑128 (MQ=255)

                                   aaTACCATAAACTTAATAATTCTTATAATGTAGATCCACGTGATCTATTTTTTTATTTTTATATCTTAACAAATAAAAAAAAAAAAATCCC‑‑ATTAAA‑AATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                     >  1:2735731/1‑128 (MQ=255)

                                     tACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAAACCCC‑‑TAAAA‑AATTaaaaaaaaaaaaaaaaaaaaaaaaaataa                                                                                   >  1:6583892/1‑120 (MQ=255)

                                       acataaacataaaAATTAATATAATTTATAAACTCGTTTTATATTTTTTTATTTTTTTAAAATCAAAAAAAAAAAAAAAAAAAACCCC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                  <  2:6416839/127‑1 (MQ=255)

                                            aaatttaaaatTATTATAATTTATTAACTCGTTATCTATTTTTTTATTTGTTTAACTTCACAAAAAAAAAAAAAAAAAACCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                           <  2:662911/120‑1 (MQ=255)

                                            aaattAAAAATTATTATAATTTAGAAACTCGTTATATATTTTTTTATTTTTATAAAATAAAAAATAAAAAAAAAAAAAACCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                           <  2:5410601/125‑1 (MQ=255)

                                                 aataatTCTTATAATGTATATCCTCTTTATCTCTTTTTTTATATTTTTATCTTCACACATAAAAAACAAACAAACAAATAAAAAA‑AAAAAAAAACCAAACAaaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                         >  1:5737556/1‑121 (MQ=255)

                                                     attattattattTATATCATCGTTATTTTTTTTTTTATTTTTTTATCTTCAAAAATAAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaa                                                                  <  1:6564428/128‑1 (MQ=255)

                                                       tCTTATAATTTTTATACTCGTTTTATATTTTTTTAATTGTTTATATTCACAAAAAAAAAAAAAAAAAAACCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaaa                                                                 <  2:3979509/128‑1 (MQ=255)

                                                                 tatttcctccTGTTATATATTTTATTTTTTTTATCTTCACAAATAAAAAAAAAAAAATCCAC‑‑ATAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatta                                                       <  2:6778718/124‑1 (MQ=255)

                                                                  atatacTCGTGATTTATTTTTTTATTTGTTTATATTAACAAAAAAAAAAAAAAAAATACCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                     <  2:2704820/123‑1 (MQ=255)

                                                                     acaaatttatatatttttttattttttTAACAT‑AAAAAAAAAAAAAAAAAAATACCC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                   <  2:1661852/117‑1 (MQ=255)

                                                                     aacacctgaattatttttttattttttTATCATCACAAAAAAAAAAAAAAAAAAACCC‑‑ATAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                  <  2:6880455/117‑1 (MQ=255)

                                                                         tatttaatatttttttattttttTATATAAAAAAATAAAAAAAAAAAAAAACCCATAAAAATTAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                  <  2:3200045/121‑1 (MQ=255)

                                                                          tttatatATTTTATTAATATTTTTTATTTAAAAATAAAAAAAAAAAAATACCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                             <  2:1478976/122‑1 (MQ=255)

                                                                          gTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACACTATTTATTAAAATTACCTATTATACAACatttt                                            >  1:6095864/1‑128 (MQ=255)

                                                                           ttttaaaTTTTTTTTTTTTTTTTTATTAAAAAAAAAAAAAAAAAAAAAACCCATT‑‑AA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                             <  2:274424/122‑1 (MQ=255)

                                                                           ttatttatttttttattttttTATATTAAAAAATAAAAAAAAAAAAATACC‑‑TTT‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                            <  2:2374523/123‑1 (MQ=255)

                                                                           ttatatATTTTTTTAATTTTTTATAATAAAAAAAAAAAAAAAAAAAAAACC‑‑ATTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                             <  2:5262364/123‑1 (MQ=255)

                                                                           tgtattatttttttattttttTATAATAAAAAAAAAAAAAAAAAAAAACCCC‑TTAAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                              <  1:5984946/123‑1 (MQ=255)

                                                                            tttttttttttttatttttttttattAAAAAATAAAAAAAAAAAAATAACATT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                           <  1:698289/122‑1 (MQ=255)

                                                                            gtttttttttttttttttttttttttttAAAATAAAAAAAAAAAAAAATTCCATTAAA‑AATTTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                              <  1:2918610/122‑1 (MQ=255)

                                                                             ataattttttttatttttttaAATTAAAAAAAAAAAAAAAAAAAATACCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                           <  2:4839014/123‑1 (MQ=255)

                                                                              tttatttttttattttttTATATTAAAAAATAAAAAAAAAAAAAACCCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                             <  1:7744932/126‑1 (MQ=255)

                                                                                 atttttttatttttttAAATTAAAAAATAAAAAAAAAAAAATACC‑‑ATTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                       <  1:839983/128‑1 (MQ=255)

                                                                                 aTTTTTTTTTTTTTTTATATTAAAAAATAAAAAAAAAAAAATACAC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                       <  2:41398/128‑1 (MQ=255)

                                                                                  ttttttttttttttTATTTTAAAAAAAAAAAAAAAAAAAATACCC‑TATAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                       <  2:2634048/128‑1 (MQ=255)

                                                                                  ttttttttttttttTATATTAAAAAATAAAAAAAAAAAAATACCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                      <  2:5806423/128‑1 (MQ=255)

                                                                                  ttttttttttttttTA‑ATTAACAAAAAAAAAAAAAAAAAACCAC‑TTAAAA‑ATTTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                      <  1:6657571/128‑1 (MQ=255)

                                                                                  tttttttatttttttaTATTAAAAAAAAAAAAAAAAAAAATACCC‑‑TTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                      <  2:7858630/128‑1 (MQ=255)

                                                                                  attttttttttGTTTAAATTCAAAAATAAAAAAAAAAAAATACCCTT‑‑‑AA‑AAATTTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                     <  1:936906/127‑1 (MQ=255)

                                                                                   ttttttttttttttATATTAAAAAAAAAAAAAAAAAAAAAACCC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTATTAAAATTCCCTATTATACCACATTTTAttttt                                      <  1:500783/128‑1 (MQ=255)

                                                                                    tttttATTTGATTATATTAAAAAATAAAAAAAAAACAAACCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                    <  2:6331711/128‑1 (MQ=255)

                                                                                     ttttttttttttATTTTAACAAAAAAAAAAAAAAAAAAAAC‑‑AATAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                   <  2:5093944/128‑1 (MQ=255)

                                                                                     ttttATTTTTTTAAATTAACAAAAAAAAAAAAAACAAACCCC‑ATAAAA‑ATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                    <  1:175217/128‑1 (MQ=255)

                                                                                        aaTTTTTTTATTTTAAAAAATAAAAAAAAAATATTATCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                              <  2:4591328/127‑1 (MQ=255)

                                                                                            tGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAA‑‑AAAAACAAAAAATATTTATTAAAATACCAAATAAAAACAAATTTTATTTTTAAAAAAAAAAAtt                         >  2:6940889/1‑128 (MQ=255)

                                                                                            tGTTTATATTAAAAAATAAAAAAAAAAAAATCCCATT‑‑‑AA‑AAATTTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                           <  1:3979933/128‑1 (MQ=255)

                                                                                             ttttATATTAAAAAAAAAAAAAAAAACAAAACCC‑‑TTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                           <  2:7559740/127‑1 (MQ=255)

                                                                                              tttaaaataacaAAAAAAAAAAAAACAATCCCC‑TTAAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                           <  2:5940221/119‑1 (MQ=255)

                                                                                              tttATATTAAAAAATAAAAAAAAAAAAATCCCC‑‑TTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                         <  2:2181040/128‑1 (MQ=255)

                                                                                                tatattaaaaaaTAAAAAAAAAAAAATACCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                        <  2:7278089/119‑1 (MQ=255)

                                                                                                tATCTTCACAAATAAAAAAAAAACAATCCCCTT‑‑‑AA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAAAAAAATAAATTTATTAAAATTACAAATTAAAAAAAATTTTATTTTTAAAATAATATAttta                       >  1:7131301/1‑126 (MQ=255)

                                                                                                 attataaaaaaTAAAAAAAAAAAAATAACAA‑‑TAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                       <  2:3629547/120‑1 (MQ=255)

                                                                                                 ataataaaaaaTAAAAAAAAAAAAATACCATTAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                         <  2:1287659/120‑1 (MQ=255)

                                                                                                 aaataaacaAATAAAAAAAAAAAAAAACC‑‑‑TTAAA‑AATT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                    <  1:2438133/122‑1 (MQ=255)

                                                                                                   gttaaaaaaTAAAAAAAAAAAAAAACAC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                     <  2:7720663/122‑1 (MQ=255)

                                                                                                   attaaaaaaTAAAAAAAAAACAAAACAATTT‑‑‑A‑AAATT‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCAAATTTTATTTTTAAAATAAGATATTGACata                   <  1:7318897/122‑1 (MQ=255)

                                                                                                    attaaaaaaaaaaaaaaaaaaaaTACCATTAAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAATCTCTATTTCTTAAAATTCACTATTATACCACATTTTATTTTTAAAATAAGATATTGAc                      <  2:5551091/123‑1 (MQ=255)

                                                                                                    aaaaaaaaaaaaaaaaaaaaaATAACC‑ATAAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                     <  2:2012265/123‑1 (MQ=255)

                                                                                                      aaaaaaTAAAAAAAAAACAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataa                  <  2:6562466/125‑1 (MQ=255)

                                                                                                       taaaaTAAAAAAAAAAAAAACAC‑‑TTTAAA‑ATAT‑AAAAATAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata                <  1:4143593/126‑1 (MQ=255)

                                                                                                       aaaaaTAAAAAAAAAAAAAT‑AAAATTTAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataa                  <  2:2845606/126‑1 (MQ=255)

                                                                                                       aaaaaTAAAAAAAAAA‑AATAAACTTT‑‑AA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata                <  2:81927/126‑1 (MQ=255)

                                                                                                            aaaaaaaaaaaCAATACCCTT‑‑‑AA‑AAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCt         <  2:7338294/127‑1 (MQ=255)

                                                                                                              aaaaaaaaaaaaTACCATAAAAAA‑ATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata            <  2:7113549/128‑1 (MQ=255)

                                                                                                                 aaaaaaaaATACCC‑‑TTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAat      <  2:6501106/128‑1 (MQ=255)

AAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATAT  >  CP016816/202358‑202605

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`