Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4940AT55.2% 61.7 / inf 589intergenic (+272/‑403)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base A (87/177);  new base T (133/192);  total (220/369)
Fisher's exact test for biased strand distribution p-value = 4.93e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.90e-01

Only 100 of 714 total aligned reads displayed.

AATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAA‑AAAT‑AAAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGCT  >  CP016816/202369‑202621
                                                                                                                              |                                                                                                                                 
 ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCtt‑‑‑aa‑aaat‑aaaaa                                                                                                                            >  1:6959261/1‑128 (MQ=255)
 ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAAAAAAAAAAAAAAAACCC‑‑‑ataaa‑aaat‑aaaaa                                                                                                                            >  2:6336433/1‑128 (MQ=255)
    ataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATATTTATATCTTCACAAATAAAAAAAAAACAATAACCTTaaaaa‑aaaa‑aaaaa                                                                                                                            >  2:1967719/1‑128 (MQ=255)
     taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGCTCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAAACCATTAAaaataaat‑aaaaa                                                                                                                            >  1:7113036/1‑128 (MQ=255)
     taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTATATCTATATTTTTATTAATTTATCATCACAAATAAAAAAAAAACAAAACACTaaaaaa‑aaaa‑aaaaaa                                                                                                                           >  1:4736226/1‑128 (MQ=255)
     taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAAACAC‑‑‑ATAAA‑AAAT‑aaaaaaaaa                                                                                                                        >  1:593491/1‑128 (MQ=255)
     taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGAACATCATCGTGATATATTTATTTATTTGATTATCTAAACAAATAAAAAAAAAAAAATCAAC‑‑TTAAA‑AATT‑aaaaaaaa                                                                                                                         >  1:2527650/1‑128 (MQ=255)
       gagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTATATATGTTTATATTAACAAATAAAAAAAAAACAATACCC‑‑TTAAA‑AATT‑aaaaaaaaaa                                                                                                                       >  2:2563863/1‑128 (MQ=255)
         gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaa                                                                                                                     >  1:625893/1‑128 (MQ=255)
          ttaattttaaataaAAAACAAAAAAATTAATAATTTTTTAAATTTATATCCTCGTTTTATATTTTTTTATTTGTTTATATTTAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaa                                                                                                                    <  1:2820196/122‑1 (MQ=255)
          ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCCCTT‑‑‑AA‑AAAT‑aaaaaaaaaaaaaa                                                                                                                   >  1:1980257/1‑128 (MQ=255)
           tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTATTTATCTTAACAAATAAAAAAAAAACAA‑‑‑ACAAATAAA‑AAAT‑aaaaaaaaaaaaaaa                                                                                                                  >  1:1573181/1‑128 (MQ=255)
           tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaa                                                                                                                   >  2:3079049/1‑128 (MQ=255)
           tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCC‑‑ATTAAA‑AATT‑aaaaaaaaaaaaaa                                                                                                                   >  2:6972569/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaa                                                                                                                  >  1:6572512/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑ATAAA‑AATT‑aaaaaaaaaaaaaaa                                                                                                                  >  1:1877971/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCAC‑‑‑TAAA‑AAAT‑taaaaaaaaaaaaaaa                                                                                                                 >  1:5218974/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTCATCTATATTTTTATTTTTATATATACACAAATAAAAAAAAAACAATAAC‑‑AATAAA‑AATT‑aaaaaaaaaaaaaaa                                                                                                                  >  1:5093944/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTAATAATGTAGATCCTCGTGATCTATTTTTTAATTTTATTATCTTCACAAATAAAAAAAAAACAA‑‑ACCAAATAAA‑AATT‑aaaaaaaaaaaaaaa                                                                                                                  >  1:3038351/1‑128 (MQ=255)
            aaGGTTAATTAAAATACAATAAAATTAATAATTCTTATAATGTAGATCCTCTTTATATATTTTTTAATTTGTTAAACTAAACAAATAAAAAAAAAAACAAAAC‑‑AATAAA‑AAAT‑aaaaaaaaaaaaaaa                                                                                                                  >  2:7071249/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAATAAAAAAAAAAAAATCACATAaaaaa‑aaaa‑aaaaaaaaaaaaaaa                                                                                                                  >  1:2205350/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaaaa                                                                                                                >  2:6118701/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaaaa                                                                                                                >  1:7170968/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTAACAAATAAAAAAAAAACAATACCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaaaa                                                                                                                >  1:7037209/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCATGATCTAATTTTTTATTTATTAATCTTCAAAAATAAAAAAAAAAAAAACAACTAaaaaa‑aaaa‑aaaaaaaaaaaaaaa                                                                                                                  >  1:4408426/1‑128 (MQ=255)
               ttttatttaAATAAAAAAAAATTAATAATTTTTATAATTTTTATAATAGTTTTATATTTTTTTATTTTTTTATATTAAAAAAAAAAAAAAAAAAAATACCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaaaaa                                                                                                               <  1:7631793/124‑1 (MQ=255)
                ttaattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaaaaa‑a                                                                                                             >  1:6467121/1‑128 (MQ=255)
                ttaattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaaaaa‑a                                                                                                             >  1:6365616/1‑128 (MQ=255)
                ttaattaaAATAAAATAAAAATAAAAATTATTAAAATTTATAACCTCTTTATATATTTTTTTTTTTTTTTATATTAAAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaaaaa‑a                                                                                                             <  2:905582/128‑1 (MQ=255)
                 taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTAACAAATAAAAAAAAAAAAAAAAAC‑‑TTAAA‑AAAT‑aaaaaaaaaaaaaaaaaa‑aa                                                                                                            >  2:4985502/1‑128 (MQ=255)
                    ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAAACAC‑‑‑ATAAA‑AAAT‑aaaaaaaaaaaaaaaaaa‑aaaaaa                                                                                                        >  2:4022531/1‑125 (MQ=255)
                    ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTATTTATATGTTTATCATCACAAATAAAAAAAAAACAAACACAATAAAAA‑Taaa‑aaaaaaaaaaaaaaaaaa‑aaa                                                                                                           >  2:2860689/1‑128 (MQ=255)
                    ttaaAATACCATAAACTAAATAATTCTTATAATGTAGATACTAGTGATCTATTTTTTTATTTTTTTATATTCACAAATAAAAAAAAAACAA‑‑AACAATAAAA‑AATT‑aaaaaaaaaaaaaaaaaa‑aaaaa                                                                                                         >  1:7267448/1‑126 (MQ=255)
                      aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCCATTAAAAA‑Taaa‑aaaaaaaaaaaaaaaaaa‑aaaaa                                                                                                         >  1:3766896/1‑126 (MQ=255)
                        aataaaaTAAAAATAATAATTATTATAATTTATATAATCTTTATATATTTTTTTATTTTTTTATATTAAAAAAAAAAAAAAAAAAAAACCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAA‑AAACTaaaaa                                                                                                    <  2:2786580/122‑1 (MQ=255)
                        aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAATAACAAT‑CACATTAAAA‑ATTT‑AAAAAAAAAAaaaataaa‑aaaataaa                                                                                                      >  2:7119716/1‑128 (MQ=255)
                          tACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAA‑AAAATaaaaaa                                                                                                   >  1:971409/1‑127 (MQ=255)
                           aacATAAACTAAATAATTCTTAAAATGTATATACTAGTGTATTATTTTTTTTTTTTTTTAAATAAACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAA‑AAACTAAaaaca                                                                                                  <  2:6677559/126‑1 (MQ=255)
                            acataaacataaaAATTAATATAATTTATAAACTCGTTTTATATTTTTTTATTTTTTTAAAATCAAAAAAAAAAAAAAAAAAAACCCC‑TTAAAA‑ATTA‑AAAAAAAAAAAAAAAAAA‑AAACTAAaaaca                                                                                                  <  2:6416839/127‑1 (MQ=255)
                             cATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAGCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAATAaaataaaaataa                                                                                                 >  1:6007903/1‑128 (MQ=255)
                              aTAAAATTAATAATTTTTATATTTTATTTCCCAGTG‑TTTATTTTTTTTTTTTTTTTTTTTTAAAAAAAAAAAAAAAAAAAAACCC‑CTTAAA‑AAAT‑AAAAAAAAAAAAAAAAAA‑AAACTAAaaacaaac                                                                                               <  1:1771665/128‑1 (MQ=255)
                                 aaattAATAATTCTTATAATGTATATCCTCGTTATCTATTTTTTTATTTGTTTATATACACAAATAAAAAAAAAACAATCCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTa                                                                                           <  2:6273816/125‑1 (MQ=255)
                                 aaattAATAATTATTTTAATTTATATACAAGTTTTATTTTTTTTTTTTTGTTTTTATTTAAAAAAAAAAAAAAAACAAACCCCAT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTa                                                                                           <  1:6395331/125‑1 (MQ=255)
                                 aaaataataaTTTTTATAATTTATTAACTCTTTATATAATTTTTTATTTTTTTAATATAAAAAAAAAAAAAAAAACAAACCCC‑‑TTAAA‑AAAT‑‑AAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTa                                                                                           <  2:1221037/124‑1 (MQ=255)
                                  aattAATAATTATTATAAATTTAAAACTCGTTATATATTTTTTTATTTTTTTAAATTAAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAA‑AAAT‑AAAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTa                                                                                           <  2:3766896/126‑1 (MQ=255)
                                    tttataatTTTTATAATTTATATACTCGTTAACTATTTTTTTATTTTTTAATATTCACAAAAAAAAAAAAAACAAACCCC‑‑TTAAA‑AAA‑‑AAAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTAttt                                                                                        <  2:2422768/125‑1 (MQ=255)
                                           attatataATTTATATACTCGTGATATAATTTTTTAATTTTTTATTTTAAAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAAT‑TTAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTaaaa                                                                                 <  2:1888162/124‑1 (MQ=255)
                                            tCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAA‑AAACAAAAAACAAACACAATATATTaaaa                                                                                 >  1:7671480/1‑128 (MQ=255)
                                                     ttattaacacttGATCTATTTTTTTATTTTTTTATATT‑AAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAA‑AAAT‑AAAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatta                                                                       <  2:7593935/117‑1 (MQ=255)
                                                         taaaattttatatatttttttattttttAAAATTAAAAAATAAAAAAAAAAAAAAACCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                                   <  2:174342/116‑1 (MQ=255)
                                                         attcttgTGATCTTATTTTTTATTTTTTTATCTTCAAAAATAAAAAAAAAA‑AATTCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                                  <  1:752211/122‑1 (MQ=255)
                                                         ataatatttttatATTTTTTTTTTTTTTTTTATTAAAAAAAAAAAAAAAAAAAAAAACCTTATAAA‑TTA‑‑AAAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                                     <  2:264109/116‑1 (MQ=255)
                                                          aaaatgttttaaaTTTTTTTAATTTTTTAAAATAAAAAAAAAAAAAAAAAAAATCCCC‑ATAAAA‑AATA‑AAAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                                    <  2:7676243/116‑1 (MQ=255)
                                                           acattgtatttATTTTTTTTTTTTTTTTTAATAAAAAAAAAAAAAAAAAAAAACCCC‑CTAAAA‑ATTA‑AAAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                                   <  2:6869045/118‑1 (MQ=255)
                                                           acaatttttttATTTTTTTATTTGTTTATATTAAAAAATAAAAAAAAAACAATCCCC‑TTAAAA‑AATA‑AAAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                                   <  2:7253954/118‑1 (MQ=255)
                                                            aattttatatatttttttattttttTATATTAAAAAAAAAAAAAAAAAAAAAACCC‑TTAAAA‑ATTA‑AAAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                                  <  2:4347909/119‑1 (MQ=255)
                                                                  ataattttttttatttttttaAATTAAAAAAAAAAAAAAAAAAAATACCC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                           <  2:4839014/123‑1 (MQ=255)
                                                                   tCTATTTTTTTATTTTTTTAATTTAAAAAAAAAAAAAAAAAAAAAACCC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttat                                                          <  2:2714936/128‑1 (MQ=255)
                                                                      tattttttAATTTTTTATATTAACAAAAAAAAAAAAAAAAAAACCC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                       <  2:3899182/126‑1 (MQ=255)
                                                                      atttttttatttttttAAATTAAAAAATAAAAAAAAAAAAATACC‑‑ATTAAA‑AATT‑AAAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                       <  1:839983/128‑1 (MQ=255)
                                                                      aTTTTTTTTTTTTTTTTTATT‑AAAAATAAAAAAAAAAAAAAAAAC‑‑TTAAA‑AAAT‑TAAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                      <  2:2152500/128‑1 (MQ=255)
                                                                       ttttttaATTTGTTTA‑ATTAATAAAAAAAAAAAAAAAAAAAACAATAAAAT‑ATAA‑AAAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                       <  1:5896305/128‑1 (MQ=255)
                                                                        ttttttttttttttttttTAAAAAATAAAAAAAAAAAAAAACC‑‑ATTAAA‑AAAT‑TAAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                     <  1:6762234/128‑1 (MQ=255)
                                                                        ttttttttttttttttATTAACAAAAAAAAAAAAAAAAAAACCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                                    <  1:6604917/128‑1 (MQ=255)
                                                                          ttttATTTTTTTAATTTAAAAAATAAAAAAAAATAAAATCAATTTT‑AA‑AATT‑TAAAAAAAAAAAAAAATA‑AAACTAAAATCAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                                    <  2:5211245/128‑1 (MQ=255)
                                                                           tttAATTTTTTAAATTAAAAAATAAAAAAAAAAAAATACC‑‑ATTAAA‑AATT‑AAAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaaa                                                  <  2:7744548/128‑1 (MQ=255)
                                                                                 tGTTTATATTAAAAAATAAAAAAAAAAAAATCCCATT‑‑‑AA‑AAAT‑TTAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                                           <  1:3979933/128‑1 (MQ=255)
                                                                                    taatattaaaaaaTAAAAAAAAAAAAATCCCC‑‑TAAAA‑AATT‑AAAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                         <  2:1407018/118‑1 (MQ=255)
                                                                                     tatatttaaaaaTAAAAAAAAAACAATCACC‑‑ATAAA‑AAAT‑‑AAAATAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                                       <  1:5525896/119‑1 (MQ=255)
                                                                                     attattaaaaaaTAAAAAAAAAAAAATCACC‑ATTAAA‑ATA‑‑AAAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                                        <  2:1648595/119‑1 (MQ=255)
                                                                                     aataataaaaaaaaaaaaaaaaaaaaaCACCA‑‑TAAA‑AATTAAAAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                         <  2:6764071/119‑1 (MQ=255)
                                                                                      ttattaaaaaaaaaaaaaaaaaaaaaACCC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                                       <  1:6666265/120‑1 (MQ=255)
                                                                                        tttaaaaaaaaaaaaaaaaaaaaaCACCATAAAAA‑TAAA‑AAAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                                       <  1:7754330/122‑1 (MQ=255)
                                                                                        attaaaaaaTAAAAAAAAAACAAAACAATTT‑‑‑A‑AAAT‑T‑AAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCAAATTTTATTTTTAAAATAAGATATTGACata                                   <  1:7318897/122‑1 (MQ=255)
                                                                                           aaaaaaTAAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataa                                  <  2:6562466/125‑1 (MQ=255)
                                                                                            taaaaTAAAAAAAAAAAAAACAC‑‑TTTAAA‑ATAT‑‑AAAAATAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata                                <  1:4143593/126‑1 (MQ=255)
                                                                                              aaaaaaaaaaaaaaCAAAACCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata                              <  2:5951839/128‑1 (MQ=255)
                                                                                                 ataaaaaaaaaaaaTAACCTTT‑‑AA‑AAAT‑AAAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata                            <  2:5324760/126‑1 (MQ=255)
                                                                                                 aaaaaaaaaaaCAAAACCC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata                            <  1:7876602/127‑1 (MQ=255)
                                                                                                    aaaaaaaaaaaaaaCCATTTAAT‑ATAT‑‑AAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc                          <  2:4157240/128‑1 (MQ=255)
                                                                                                    aaaaaaaaaaATTCAC‑TTTAAA‑ATTT‑AAAAAAAAAAAAAAAAAA‑AAA‑‑AAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTa                        <  2:6023107/128‑1 (MQ=255)
                                                                                                      aaaaaaaaATACCC‑‑TTAAA‑AAAT‑‑AAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAat                      <  2:6501106/128‑1 (MQ=255)
                                                                                                       aaaaaaaaTAACATTTTAAA‑AATA‑AAAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAAATCACTATTATACAACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTa                        <  2:2315887/128‑1 (MQ=255)
                                                                                                            aaaaaaccctttAAA‑AAAT‑‑AAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat                  <  2:585400/119‑1 (MQ=255)
                                                                                                             aaatacacttaaaa‑atat‑aaaaaaAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat                  <  2:6619495/117‑1 (MQ=255)
                                                                                                             aaaatacccttAAA‑AAAT‑AAAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat                  <  2:824797/119‑1 (MQ=255)
                                                                                                             aaaaataccattaa‑aaat‑taaaaaAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat                  <  2:3588718/116‑1 (MQ=255)
                                                                                                              aaatacccataaa‑aaataaaaaaAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCGCATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat                  <  2:5443935/119‑1 (MQ=255)
                                                                                                                aaaaacataaa‑aaataaaaaaAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat                <  2:7876219/121‑1 (MQ=255)
                                                                                                                 aaaattaaaa‑ataa‑aaaaaaAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa              <  2:5087973/121‑1 (MQ=255)
                                                                                                                    cccttaa‑aaat‑taaaaaAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc           <  1:6118701/123‑1 (MQ=255)
                                                                                                                    cattAAA‑TAAT‑‑AAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACt          <  2:7413222/126‑1 (MQ=255)
                                                                                                                    caataaa‑aaat‑aaaaaaAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc           <  2:7170968/125‑1 (MQ=255)
                                                                                                                     tttATA‑AATT‑TAAAATAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACAACATTTTATTTTTAATATAAGATATTGACATAATATATATCTAATATATATAATACt          <  2:7544202/128‑1 (MQ=255)
                                                                                                                      aatttataat‑taaaaaAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACt          <  2:3294634/121‑1 (MQ=255)
                                                                                                                       ttaa‑aaat‑taaaaaAAAAAAAAAAAA‑AAACTAAAAACAAACTATATTTATTAAAATTCCCAATTAAACAACATTTTATTTTTAAAATAAAATATTAACATAATATAAATATAAAAAATAAAATAatat        >  2:7336858/3‑128 (MQ=255)
                                                                                                                       taaa‑aatt‑aaaaaaAAAAAAAAAAAA‑AAAATAAAAAAAAACTATTTTTATTAAAATTAAATATTTAAACAAATTTTATTTTAAAAAAAATATATTAAAAAAATATATATAAAATTTATAAAATAatat        >  2:4637122/1‑128 (MQ=255)
                                                                                                                            aaat‑taaaaaAAAAAAAAAAAA‑AAACTAAAAAAAAAATATATTTATTAAAATTCCAAATTATACCACATTTTTTTTTTAAAATAATATATTTACATAATATATATATAATATAATAAATAATATAtta    >  1:6861013/1‑127 (MQ=255)
                                                                                                                              at‑aaaaaaAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGCt  <  2:560569/128‑1 (MQ=255)
                                                                                                                              at‑aaaaaaAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGCt  <  1:1001219/128‑1 (MQ=255)
                                                                                                                              |                                                                                                                                 
AATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAA‑AAAT‑AAAAAAAAAAAAAAAAAA‑AAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGCT  >  CP016816/202369‑202621

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑