Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,9370CA35.9% 2629.2 / 277.2 1769intergenic (+321/+137)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base C (521/574);  new base A (493/121);  total (1036/733)
Fisher's exact test for biased strand distribution p-value = 1.06e-41
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1794 total aligned reads displayed.

AGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTT  >  CP016816/203810‑204064
                                                                                                                                       |                                                                                                                                  
 gCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAATTTAATTTTGGATc                                                                                                                                    >  1:613510/1‑128 (MQ=255)
    aTTTTTAAAAATCCCAATTATCTAGGTTATTTATTATACATATCAACATTACAACTATTTAAAATTGTATTTTTTTTGA‑‑‑T‑‑‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCaa                                                                                                                              <  1:5017090/128‑1 (MQ=255)
    aTTTTTAAAAAAGGCTATGTTCTAGTCTTTTTATTATACTTATAAACATTACAACGCTTTCAAACTTTATTTTTTTGGC‑‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAAcc                                                                                                                                <  2:6471868/128‑1 (MQ=255)
         tAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGTT‑‑TTTTTTTTTTTTTTTTGTAAAAAAAAAAGTATGATTTGGAGCAACCaaa                                                                                                                             >  2:2295952/1‑128 (MQ=255)
          aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAAc                                                                                                                           >  2:1198156/1‑128 (MQ=255)
                gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTTAAAATTAAATTAATAATTGTATCAACAAAAACtataaa                                                                                                                     >  1:1538537/1‑126 (MQ=255)
                gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAATTTTTGGTAAAACAAAAACttataa                                                                                                                     >  1:4373714/1‑123 (MQ=255)
                    aTGTTCTATGCTTTTTATTATACTTATCAAAATTACAAAGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCaaaaa                                                                                                             <  2:6645165/128‑1 (MQ=255)
                     gaacatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAATTAAAATTAAGTTTTTGATAAAACAAAACTATTAaaaaaa                                                                                                            >  2:6522932/6‑128 (MQ=255)
                       acatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGTT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAAAATTTTGAACAACCAAAACTAaaaaaaaaaa                                                                                                            >  1:860363/4‑128 (MQ=255)
                       acatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAAGTAATATTTTGAAAAAACAAAAATATTAaaaaaaaa                                                                                                           >  1:1926959/4‑128 (MQ=255)
                          tAGGCTTTTTATTATACTTATCAACATTACTACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAAGTAAGATTTTGTTAAACCAAAACAATATAAAAAATATTaa                                                                                                       >  2:3166553/1‑128 (MQ=255)
                          tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAAGTTAAATTTTGATAAAACAATAATATTATAAAAAAATTa                                                                                                        >  2:4928635/1‑128 (MQ=255)
                           aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAATATTTGTTTAAACCAAAACTATATCAAAAAAATTaa                                                                                                       >  1:5994600/1‑128 (MQ=255)
                            ggCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGTT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAATATTTGGTTAAAAAAAAAATATTAAAAAAAATTtaa                                                                                                      >  1:5657425/1‑128 (MQ=255)
                                 tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGTT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAATATTTGTTTAAACAAAAACATATTAAATAAAATTtaaaaaa                                                                                                  >  2:6061217/1‑128 (MQ=255)
                                  ttattaTAATTATCAACATTAAAACTCTTTCAAATTTTATTTTTTTGGG‑‑‑TTGTTTTTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTaaaaaaa                                                                                                  <  1:6312939/128‑1 (MQ=255)
                                     ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGTTTTTTTTTTTTTTTTTTTTGTAAAAAAAAAAATATCATTTATAACAACAAAAAATTAATAAAAAAAATAAAAAAAAAt                                                                                                >  2:2841994/1‑128 (MQ=255)
                                     ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGTT‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAATTAAAATTTTGTTCAACCAAAAATATAAAAAAAAAATTaaaaaaaaaat                                                                                              >  1:350944/1‑125 (MQ=255)
                                     ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAATTTAAATTTTAGAACAACCAAAAAAAaataaaaaaaaataaaaaaataatt                                                                                             >  2:3727683/1‑123 (MQ=255)
                                      tataATAATCAACATTTAAACGATTTAAAAGTGTTTTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAAtagtt                                                                                            <  2:5966402/128‑1 (MQ=255)
                                         aCTTATCAACATTACGACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTTAAAATAAAATTTTGTTTTTGTTAAAACAAAAAATTAAAAAAAAAATTAAAAAAAAaatttttt                                                                                         >  2:7327605/1‑126 (MQ=255)
                                          cTTATCTAAATTACAAGTCTTTCAAATTGTTTTTTTTTGGT‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAAtagtttagt                                                                                        <  1:5895705/128‑1 (MQ=255)
                                          cTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAAAATTTTGGTAAACCAAAAATTTATAAAAAAAATTAAAAAAAAtattttaga                                                                                        >  2:6326110/1‑127 (MQ=255)
                                          cTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAAATTAAATTTTGTAAAACCAAAAATATAtaaaaaaaattaaaaaaaattatttttt                                                                                        >  2:3032370/1‑120 (MQ=255)
                                            tATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAATTTAAAATTTTGATAAACAAAAAATATATAAAAAAAATTAAAAAAAAtattttattta                                                                                      >  2:135806/1‑127 (MQ=255)
                                             aTCAACATTACAACGCTTTCAAATTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAATAAAATTTTGGATAAACAAAACAATATACTAAAAAATATAAAAAAAttcttatctagc                                                                                     >  1:7375914/1‑117 (MQ=255)
                                             aTCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAATTAATATTTTTAAAAACAAAAAATAAATAAAAAAAAATAAAAAAAAaattttatttta                                                                                     >  1:2301874/1‑126 (MQ=255)
                                                 aCATTACAACGCTTTCAAAGTGTATTTTTTAGGCTAGTTT‑‑‑‑TTTTTTTTTTTTTTTTTTTAAAATAAAAATAATTTTTGGATAAAAAAAAAATATTACAAAAAATTTAAAAAAAAtatttttatttatt                                                                                   >  2:3445917/1‑120 (MQ=255)
                                                 aCATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAATAAAAAATTGGATAAACAAAAAAAATAAAAAAAAATTAAAAAAAAATATTTAATTTGAtttt                                                                                 >  1:4050883/1‑128 (MQ=255)
                                                  cATTACAACGCTTTCAAAGTGTATTTTTTAGTC‑‑‑TTGTT‑‑TTTTTTTTTTTTTTTTTTAAAAAATAAATTAAGAATTTGAAAAACCAAAAGAATTTAAAAAAAATTAAAAAAAATATTTTTGTTGTGttt                                                                                 >  2:1545400/1‑128 (MQ=255)
                                                    tttaaaCGTTTTTAATTTGTATTTTTTTGGT‑‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAAt                                                                            <  1:2998307/124‑1 (MQ=255)
                                                              ttCAAAGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTTAAAATAAAAGTAAGATTTGGATAAACCAAAAATATAAAAAAAAAATTAAAAAAAATAGTTTTTTTTAGTTACAAAtattcaaat                                                                    >  2:7495470/1‑120 (MQ=255)
                                                              ttCAAAGTGTATTTTTTAGGC‑‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAAAATAAAATTTTTATCAAAAAAAAAATATTAAAAAAAAATAAAAAAAAAATTTTTATTGAGTATAAAATATTCatat                                                                    >  2:5836437/1‑128 (MQ=255)
                                                               tCAAAGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAAGTAATATTTGGATAAACCAAAACTATATAAAAAAAATTAAAAAAAATATTTTATTTTATTTTAAAATATGAattta                                                                   >  1:484838/1‑128 (MQ=255)
                                                               tCAAAGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAATTTAAGATTTGTATAAAAAAAAAAAAAATAAAAAAAATTAAAAAAAATAATTTAATTTAGTTTAAAAtaggaattta                                                                   >  1:7915529/1‑119 (MQ=255)
                                                               tCAAAGTGTATTTTTTAGGC‑‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCATAACTATTACAAAAAAATTAAAAAAAATATTTTAGTTGACTTTCAAATCTTCatatat                                                                  >  2:4034467/1‑128 (MQ=255)
                                                                  aattgtTTTTTTTATGC‑‑‑TTG‑‑‑‑‑‑TTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAATATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTAc                                                             <  1:6684923/125‑1 (MQ=255)
                                                                   aGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAAGAAAGAATTGGAACAACCAAAACAATAAAAAAAAAATTAAAAAAAAATGTTTAGTAGACTTTCAAAAAGGCAaatataat                                                               >  2:7725703/1‑126 (MQ=255)
                                                                   aGTGTATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAATTAATATTTGGATAAACCAAAACTTTATAAAAAAAATTAAAAAAAATATTTATGTTTATTTTAAAAAATGAAaatatata                                                               >  2:6713901/1‑126 (MQ=255)
                                                                     tgtATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAAATAAATTAAATTTTTGATAAAACAAAAAAATAAAAAAAAAAATAAAAAAAAAATTTTTGTTTAATTTAAAAAATGAATATttattaa                                                             >  1:6580351/1‑127 (MQ=255)
                                                                      tttttttttttGT‑‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACaa                                                           <  1:2440358/125‑1 (MQ=255)
                                                                      gtATTTTTTAGGC‑‑‑TTGTTTTTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTATTTGAGTTTAAAATATGCAAATATAGTa                                                              >  2:6122854/1‑128 (MQ=255)
                                                                      gtATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGAACAACCAAAACTATATCAAAAAAATTAAAAAAAATTGTTTAGTTGAGTTTCAAATCTGCTTATATAGTACa                                                            >  2:6231812/1‑128 (MQ=255)
                                                                      gtATTTTTTAGGC‑‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATATTTTAGTTGAGTTTCAAATCTGCATATATATTACaa                                                           >  2:7608452/1‑128 (MQ=255)
                                                                       tATTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAAGTAAAATTTGGAACAACCAAAACTATATAAAAAAAATTAAAAAAAATATTTTATTTAAGTTACAAATCTGAATATATTGAACaa                                                           >  2:7059596/1‑128 (MQ=255)
                                                                        aTTTTTTAGGC‑‑‑TTGTT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAATATTTGGAAAAACCAAAAATATTTCAAAAAAATTAAAAAAAATATTTTATTTTTTTTTAAAATATTCATAAATAGTACaa                                                           >  2:5225199/1‑128 (MQ=255)
                                                                        aTTTTTTAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAATATTTTGTTAAACCAAAAATTTTAAAAAAAAATTAAAAAAAATATTTTATTTGATTTTAAAATATGAaaataatttaaaaa                                                          >  2:6792218/1‑119 (MQ=255)
                                                                           ttttAGGC‑‑‑TTGTTTTTTTTTTTTTTTTTTTTTAAAAAAAAAATTAATATTTGGTAAAACAAAAACAATATAAAAAAAATTAAAAAAAATATTTTTATTTTAATTAAAATATGCATATATAGTaaaatg                                                         >  2:3580641/1‑126 (MQ=255)
                                                                           ttttAGGC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAAATATATCAAAAAAATTTAAAAAAATTTTTTAGTTGAGTTTCAAATCTGCAAATATAGTACAAAgta                                                       >  2:923841/1‑126 (MQ=255)
                                                                                 gC‑‑‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAAGATTTGTATCAACCAAAAAATTTTAAAAAAAATTAAAAAAAATAGTTTTTTTGATTTTAAAAAATACAAATATTTTAAAATGAAATTTag                                                 >  1:6226590/1‑127 (MQ=255)
                                                                                     ggcttgttttttttttttttttttttAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATATTTTATTTGAGTTTCAAATCTGCATATATTTTAAAAATGAAttt                                                   >  2:6411592/9‑128 (MQ=255)
                                                                                      gttttttttttttttttttttttGTAAATATAATAGTAAGATTTGGATCAAACATAATTATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa                                                  <  1:4235409/121‑1 (MQ=255)
                                                                                       ttttttttttttttttttttttGTAAAAATAAAAGTAAGATTTGTATCAAACAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                                 <  2:5576302/122‑1 (MQ=255)
                                                                                       ttgtttttttttttttttttttGTAAAAATAAAAGTAAGATTTTGATCAACAAAAACTTTATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                                 <  1:3920642/122‑1 (MQ=255)
                                                                                          tttttttttttttttttttttATAATTAAAATTAATATTTTTATTAAATAAAAATATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTTAAATATGCATATATAGTACAAAGGAATTTATGAt                                              <  1:1021409/125‑1 (MQ=255)
                                                                                           gtttttttttttttttttttAAAAATAAAATTAAGATTTTGATCAACCAAAACTTTATAAAAAAAATTAAAAAAAAAATTTTATTTTAGTTTCAAATATTCATATAAAATAAAAAGGAATTTAttaaa                                             >  2:7914972/3‑124 (MQ=255)
                                                                                              ttttttttttttttttTAAAAATATATGTAAGATTTGTATAAAACAAAATTATATCAATAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                                          <  1:5424555/128‑1 (MQ=255)
                                                                                              tttttttttttttttGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                                          <  1:5217810/128‑1 (MQ=255)
                                                                                               ttttttttttttttttAAAAATAAAATTAAAATTTTGAAAAACCAAAAAAAAAAAAAAAAAATTAAAAAAAATATTTTATTATTGTTTAAAATATTAAATTATATTAAAAAAGAATTTTTTATATaaa                                         >  1:988688/1‑128 (MQ=255)
                                                                                               ttttttttttttttGTTAATATATTAGTAAGTTTTGGATAAATAAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaa                                         <  1:3230055/128‑1 (MQ=255)
                                                                                               ttttttttttttttGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaa                                         <  1:7699641/128‑1 (MQ=255)
                                                                                                  tttttttttttGTAAAAATTAAAGTAAGATTTGGATCAAACAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaa                                      <  1:2036070/128‑1 (MQ=255)
                                                                                                  tttttttttttGTAAAAATAAAATTAAGATTTGGAAAAACCAAAAATATAAAAAAAAAATTAAAAAAAATATTTTATTTTATTTTAAAATATGAATATATATTAAAAAGGAAATTATTATATaaaaaa                                      >  1:6887610/1‑128 (MQ=255)
                                                                                                         ttttGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAtt                               <  1:2614694/128‑1 (MQ=255)
                                                                                                          tttGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTa                              <  1:7615237/128‑1 (MQ=255)
                                                                                                           ttGTAAAAATATAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAATATGGATTat                             <  1:6813095/128‑2 (MQ=255)
                                                                                                           ttGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat                             <  1:650415/128‑2 (MQ=255)
                                                                                                             gTAAAAATAATAGTAAGATTTGGATCAACAAAAAGTATATAAAATAATTTTAAAAATATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatca                           <  1:1771601/128‑4 (MQ=255)
                                                                                                             gTAAAAATAAAAGTAAGATTTGGATTAACAAAATATATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatca                           <  2:424219/128‑4 (MQ=255)
                                                                                                                 aatattaaaGTAAGATTTTGTTCAACCATAACTATATCAAATAAATTAAAATATATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGAt                        <  1:7274516/122‑1 (MQ=255)
                                                                                                                 aaaaTAAAAGTAAGATTTGGATCAACCAAAACTATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGAt                        <  1:6398362/128‑1 (MQ=255)
                                                                                                                   aaTAAAAGTAAGATTTGGATCAACCAATACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATaa                      <  2:2087765/128‑1 (MQ=255)
                                                                                                                    ataataGTAAGATTTTGATCAAATAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAAt                     <  2:2719037/128‑1 (MQ=255)
                                                                                                                     tAAAAGTTAGATTTGGATCAACCATAACTATATAAAAAAAATTAATAATAATAGTTTAGTTGAGTTTAAAATCTGCATATATAGTAAAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                    <  2:5109621/128‑1 (MQ=255)
                                                                                                                     tAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                    <  2:1797647/128‑1 (MQ=255)
                                                                                                                     tAAAAGTAAGATTTGGATCAACAAAAAATATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATATGCATATATAGTACATAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                    <  1:7807722/128‑1 (MQ=255)
                                                                                                                      ataaGTAATATTTGGATCAACCAAAACTATATCAAAAATATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                   <  2:4540604/126‑1 (MQ=255)
                                                                                                                      aaaaGTAAGATTTGGATCAAAAAATACTATATCAAAAAAATTAAAAAAAATATTTTAGTTTAGTTTCAAATCTGCATATATAGTACAAAGTAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                   <  2:5725668/128‑1 (MQ=255)
                                                                                                                        aaGTAAGATTTGGATCACCCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt                 >  1:7027414/1‑128 (MQ=255)
                                                                                                                          gTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttt               >  2:4792459/1‑128 (MQ=255)
                                                                                                                            aataTTTGTATGAAGAAATACTATATCAATAAAATTAAAAAATATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttttt             <  2:4147276/125‑1 (MQ=255)
                                                                                                                            aaGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttttt             >  2:4659487/1‑128 (MQ=255)
                                                                                                                            aaGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttttt             >  1:2170524/1‑128 (MQ=255)
                                                                                                                            aaGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttttt             >  2:7824434/1‑128 (MQ=255)
                                                                                                                             aGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt            >  1:2769530/1‑128 (MQ=255)
                                                                                                                             aGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt            >  1:369998/1‑128 (MQ=255)
                                                                                                                             aGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt            >  2:4379408/1‑128 (MQ=255)
                                                                                                                             aGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt            >  2:2426487/1‑128 (MQ=255)
                                                                                                                             aGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt            >  1:7134183/1‑128 (MQ=255)
                                                                                                                               aTTTTGATCAAAATAAAATATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTaa          <  2:1956616/128‑1 (MQ=255)
                                                                                                                               aTTTGTATCAAACAAATCTATATCAAAAAATTTAAAAATAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTaa          <  2:2574730/128‑1 (MQ=255)
                                                                                                                               aTTTGGATCAAACAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTaa          <  1:7487955/128‑1 (MQ=255)
                                                                                                                                tttGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTACTTGATAATCCATTTTTTAAt         >  1:4614570/1‑128 (MQ=255)
                                                                                                                                   ggATCGACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATATTCCATTTTTTAAtttt      >  2:5385056/1‑128 (MQ=255)
                                                                                                                                   ggATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAtttt      <  2:6936856/128‑1 (MQ=255)
                                                                                                                                    gttCAAGCAATACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTTAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTg     <  2:1685449/126‑1 (MQ=255)
                                                                                                                                    gATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTGTTTAATTTTg     >  2:7209506/1‑128 (MQ=255)
                                                                                                                                      tCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGtt   >  1:1265019/1‑128 (MQ=255)
                                                                                                                                      tCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGGTTAGGTGTGTTTCAAAAGGGCATAAATAGTACAAAGGAAATTAAGATAGAAAAAAATGGAATAGAGTATTATACAATTTTTAATgttgtt   >  2:390245/1‑128 (MQ=255)
                                                                                                                                       |                                                                                                                                  
AGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TTG‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTT  >  CP016816/203810‑204064

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: