Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816437,8820T.60.9% 518.0 / inf 902intergenic (‑186/+236)JCVSYN2_01985/JCVSYN2_01990glycosyl transferase/ABC transporter permease
Reads supporting (aligned to +/- strand):  ref base T (170/180);  new base . (299/245);  total (469/433)
Fisher's exact test for biased strand distribution p-value = 6.43e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1302 total aligned reads displayed.

AAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATA  >  CP016816/437755‑438009
                                                                                                                                 |                                                                                                                               
 aaCTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ata                                                                                                                                >  1:573618/1‑128 (MQ=255)
   cTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atata                                                                                                                              >  1:4536817/1‑128 (MQ=255)
     tATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatata                                                                                                                            >  1:3037951/1‑128 (MQ=255)
     tATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatata                                                                                                                            >  2:2929312/1‑128 (MQ=255)
       tttttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatatata                                                                                                                          >  2:684099/1‑128 (MQ=255)
       tttttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACATATAGAGTTAATG‑‑atatatata                                                                                                                          >  1:3347252/1‑128 (MQ=255)
       tttttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTACATATTACCTATAGAGTTAATG‑‑atatatata                                                                                                                          >  2:4243400/1‑128 (MQ=255)
         tttGTAGTTGTAAGTTTCATTTTTAATAAATAATAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatatatata                                                                                                                        >  1:1246895/1‑128 (MQ=255)
          ttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatatatatat                                                                                                                       >  1:4354984/1‑128 (MQ=255)
               gTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGCTAATG‑‑atatatatatatatata                                                                                                                  <  2:4308891/128‑1 (MQ=255)
                   tAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatatatatatatatatata                                                                                                              <  2:2703354/128‑1 (MQ=255)
                   tAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatatatatatatatatata                                                                                                              >  2:1853532/1‑128 (MQ=255)
                    aaGTTTCATTTTTAATAAATATTAGAAATAAAAATTTTATTTTTAAAATAAATATTTTAGTAAATGAAGCAAATAAAAAAACTCCATATTACCTATAGAGTTAATG‑‑atatatatatatatatatatat                                                                                                             <  2:1185137/128‑1 (MQ=255)
                     tgTTTAATTTTTAATAAATATTATATATAAAAATTTTATTTTTAAAATATATATTTTATTAAATGAATAAAAGCAAAAAACTCCATATTAACTATAGAGTTAATt‑‑atatatatatatatatatatata                                                                                                            <  1:714544/127‑1 (MQ=255)
                     aGTTTCATTTTTAATAAATATTAGATAAAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAATCTAAAACCTCCATATTACCTATAGAGTAAATG‑‑atatatatatatatatatatata                                                                                                            <  2:2482927/128‑1 (MQ=255)
                     aGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatatatatatatatatatata                                                                                                            <  2:4157609/128‑1 (MQ=255)
                      ttttAATTTTTAATATATATTATATATAAAAATTTTATTTTTAAAATATATATTTTATGAAATGTATAAAAGATAAAACATCCATATTTACTATAGAGTTAATG‑‑atatatatatatatatatatatat                                                                                                           <  1:3917672/127‑1 (MQ=255)
                      ttttAATTTTTAATAAATATTATAAATATATATTTTTTTTTTAAAATAAATATTTTATGAAATTAAGAAAACCAAAAAACTCCATATTAACTATATAGTTAATG‑‑atatatatatatatatatatatat                                                                                                           <  1:498362/127‑1 (MQ=255)
                      gTTTCATTTTTTATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatatatatatatatatatatat                                                                                                           >  2:1057129/1‑128 (MQ=255)
                      gTTTAATTTTTAATAAATATTAGAAATAAAAATTGTATTTTAAAAATAAATATATTAGTAAATCAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatatatatatatatatatatat                                                                                                           <  2:209212/128‑1 (MQ=255)
                       tttCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatatatatatatatatatatatg                                                                                                          <  2:3475980/128‑2 (MQ=255)
                       tttCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatatatatatatatatatatata                                                                                                          >  2:3752622/1‑128 (MQ=255)
                         tCATTTTTAATAAATATTAGATATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAATCAAAGCAAAAAACTCCATATTAACTATAGAGTTAATG‑‑atatatatatatatatatatatatata                                                                                                        <  1:4440350/128‑1 (MQ=255)
                          cATTTTTAATAAATATTAGAAATAAAAATTTTATTTTTAAAATAAATATTTTTGGAAATGAAGCAAAGAAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatatatatatatatatatatatatgc                                                                                                       <  1:953175/128‑3 (MQ=255)
                           aTTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTACATATTACCTATAGAGTTAATG‑‑atatatatatatatatatatatatattca                                                                                                      >  1:3832219/1‑125 (MQ=255)
                               ttAATAAAAATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatatatatatatatatatatatatgcaagcg                                                                                                  >  2:927483/1‑121 (MQ=255)
                                 aataaataTTATAAATAAAAATTTTATTTTTAAAATAAATATTTTAGGAAATTAAGAAAAGAAAAAACCTCCATATTACATATAGAGTTAATG‑‑ATATATATATATATATATATATATATATGCAAGCg                                                                                                <  2:856365/128‑1 (MQ=255)
                                 aataaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTATTAAATGAATCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATATATATATATATATATATATGCAAGCg                                                                                                <  2:3276091/128‑1 (MQ=255)
                                 aataaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑atatatatatatatatatatatatatgaaagagat                                                                                                >  1:1781962/1‑119 (MQ=255)
                                 aataaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTAACTATAGAGTTAATG‑‑atatatatatatatatatatatatgcaagagatca                                                                                                >  2:2994322/1‑117 (MQ=255)
                                 aataaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAACCAAAAACCTCCATATTAACTATAGAGTTAATG‑‑atatatatatatatatatatatatatatatgcaag                                                                                                <  1:3708001/128‑8 (MQ=255)
                                    aaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAAGAAAAGAAAAAAACTCAATATTACCTATAGAGTTTATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAg                                                                                           <  1:1002023/128‑1 (MQ=255)
                                     aataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATATATATATATATATATATA‑‑CAAGCGATCAGc                                                                                          >  1:1585734/1‑128 (MQ=255)
                                      atatTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCa                                                                                         >  1:4039816/1‑128 (MQ=255)
                                       tatTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAATCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCAt                                                                                        <  2:1427292/128‑1 (MQ=255)
                                       tatTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATATATATATATATATATATATGCAAGCGATCAga                                                                                          >  1:3767774/1‑127 (MQ=255)
                                         ttAGAAATAAAAATTTTATTTTTAAAATAATTATTTTATTAAAAGAATCTAATATAAAATATCAATATTAAATATAGATTT‑‑TT‑‑TTATATATATATATATATATATATATATGCAAGCGATCAGCATaa                                                                                      <  2:1345716/128‑1 (MQ=255)
                                         ttAGAAATAAAAATTTTATTTTTAAAATAAATATTTTAGGAAATGAACCAAAGAAAAAACATCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATaa                                                                                      <  1:4119161/128‑1 (MQ=255)
                                          tAGATATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAATCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATaaa                                                                                     <  2:1539212/128‑1 (MQ=255)
                                          tAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGCTCAGCATaaa                                                                                     >  2:3685780/1‑128 (MQ=255)
                                          tAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCATCATaaa                                                                                     >  2:2171429/1‑128 (MQ=255)
                                           attaaTAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGAAAAAACATCCATATTATATATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATaaaa                                                                                    <  1:2972093/125‑1 (MQ=255)
                                           ataaaTAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAATCAAAGCAAAAACCTCCATATTAACTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATaaaa                                                                                    <  2:4047682/126‑1 (MQ=255)
                                           ataaaTAAAAATATTATTTTTAAAATAAATATTTTAGTAAATGAATAAAAGAAAAAACCTCTATATTACATATAGAGTTAAAT‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATaa                                                                                      <  1:1630810/126‑1 (MQ=255)
                                            gAAATAAAAATTTTATTTTTAAAATAAATATTTTTGGAAATTAAGCAAAGCAAAAACCACCATATTACATATAGAGTTAATG‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATaaa                                                                                     <  2:1096061/128‑1 (MQ=255)
                                            gAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATaaa                                                                                     >  2:1701658/1‑128 (MQ=255)
                                              aaTAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGAAAGCGATCAGCATAAAATgg                                                                                 >  2:2018310/1‑128 (MQ=255)
                                                tAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAATTGGTg                                                                               >  2:529523/1‑128 (MQ=255)
                                                 aaaaaTT‑TATTATTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCAATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAAt                                                                           <  2:4469043/128‑1 (MQ=255)
                                                  aaaaTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATATATATATATATATATATGTGAAAGAGATCATCATAAAATGGTg                                                                               >  2:3864786/1‑128 (MQ=255)
                                                      ttGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAAt                                                                           <  2:3938366/128‑1 (MQ=255)
                                                        gTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATATATATATATATATAT‑‑‑T‑CAATCGATCAGAAGAAAATGGTGATATTTatat                                                                     >  1:3514516/1‑128 (MQ=255)
                                                        gTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGAAAGCTATAAGCATAAAATGGTGATATTTAg                                                                       >  1:2734474/1‑128 (MQ=255)
                                                         tATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGATATTTAGa                                                                      >  1:2117119/1‑128 (MQ=255)
                                                         tATTTTTAAAAAAAATATTTTATGAAATGAAGAAAATCAAAAACCTCCATATTACATATAGAGTTTAT‑‑‑‑TATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGa                                                                      <  2:3069605/128‑1 (MQ=255)
                                                          aTTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGAAAGAGATCATCATAAAATGGTGATATTTAGAt                                                                     >  1:1084057/1‑128 (MQ=255)
                                                           tttttAAAATAAATATTTTAGTCAATGAAGCAAAGCAAAAACCTCCATATTAACTATAGAGATAATG‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGa                                                                      <  2:3573477/128‑1 (MQ=255)
                                                             tttATAATAAATATTTTATGAAATGAATAAAATAAAAAACCTCTATATTAACTATATAGTTAAT‑‑‑‑TATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTg                                                                  <  2:1949875/128‑1 (MQ=255)
                                                             tttAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATGATATATATATATATATATATATATATATATTCAAGCTATCATAATATAATGGttatatatata                                                                      >  2:2621741/1‑118 (MQ=255)
                                                             tttAAAATAAATATATTATGAAATGAAGCAAAGCAAAAACCTAAATATTACATATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTg                                                                  <  1:826718/128‑1 (MQ=255)
                                                               tAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATATATATATATATATATATATGAAAGCGATCAGCATAAAATTGTTAAATTTATATCTg                                                                  >  1:2057062/1‑128 (MQ=255)
                                                               tAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGAAAGCTATAATAATAAAATGGATATATTTTTATCTGAg                                                                >  2:617130/1‑128 (MQ=255)
                                                               tAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATCAAAGCGACCAGCATAAAATTGTGAAATTTAGATATgtg                                                                >  2:1247185/1‑126 (MQ=255)
                                                                  attaaataTTTTAGGTTATTTATCAAAGCAATTACCTACATATTATATATAGAGTTAATG‑‑ATATATATAT‑‑‑‑‑T‑TATATATATATGCAATCGATCAGCATAAAATGGTGAAATTTATATCTGAGTTGGtat                                                         <  1:4176107/126‑3 (MQ=255)
                                                                  aataaataTTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGAATAAAATGTTTAAATTTAGATCTGATTTg                                                             >  2:730109/1‑128 (MQ=255)
                                                                    taaaaaTTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑‑‑ATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTa                                                       <  1:3212589/128‑1 (MQ=255)
                                                                       atatTTTAGTAAATGAAGCAAAGCAAAAACCTCAATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTaa                                                      <  2:3396641/128‑1 (MQ=255)
                                                                         attttattgaaTGAATCTAACCTAAAACCTCGATATTCACTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGATATTTAGATCTGAGTTGGTCTTaa                                                      <  2:2547762/119‑1 (MQ=255)
                                                                         atTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCTGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTaa                                                      <  1:1534482/128‑1 (MQ=255)
                                                                         atTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGAAAGCGATCATCAAAAAAAGGAGAAATATATATATGAGATgttataaa                                                      >  1:2575144/1‑121 (MQ=255)
                                                                         aatttAGTAAATGAATCAAAGAAAAAAACTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAAt                                                    <  1:3593053/126‑1 (MQ=255)
                                                                            ttAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAATATTGTGAAATTTAGATCTGAGTAGGTCTTAAATTTg                                                 >  1:2420615/1‑128 (MQ=255)
                                                                            ttAGGAAATCAAGCAAAGAAAAAACATCCATATTACCTCTAGAGTTAATG‑‑ATATATATATATATATATATATATATATGAAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTaaa                                                     <  2:2815518/128‑1 (MQ=255)
                                                                             tAGTAAATGAAGCAAATCAAAAACCTCTATATTATCTATAGAGTTAATGATATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTaa                                                      <  2:2382948/128‑1 (MQ=255)
                                                                               ggAAATTAAGCTAACCACAAACCTCTATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGAGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAg                                              <  1:2310249/128‑1 (MQ=255)
                                                                                   aTGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATATGAGTTTGTCTTTAATTTCTAGtttt                                          >  2:2244113/1‑128 (MQ=255)
                                                                                      aagaaaagaaAAAACATCCATATTATCTATAGAGATAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGttttt                                         <  2:3331572/128‑1 (MQ=255)
                                                                                         caaagcaaaAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGAATAAAATGGTGAAATTTATATCTGAGTTGCTAATATATTTGTATTTtatatt                                      >  1:1849604/1‑128 (MQ=255)
                                                                                          aaagcaaaAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTttatttat                                   <  1:91101/128‑1 (MQ=255)
                                                                                           aagcaaaAACCTCAATATTAAATATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttattta                                    <  2:1599064/128‑1 (MQ=255)
                                                                                            ttcaaaTACATCTATATAACCTATAGAGTTAATG‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttattt                                     <  1:1438561/126‑1 (MQ=255)
                                                                                            agcaaaAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGAAAGCGATCAGAATAAAATGGTGATATATAGATCTGAGATGGTCTTAAATTTGTAGTTTttatttat                                   >  1:2511713/1‑128 (MQ=255)
                                                                                              caaaAACCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGCTCTGAGTTGGTCTTAAATTTGTAGTTTttatttattg                                 >  1:1168468/1‑126 (MQ=255)
                                                                                               aaaaaCCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑‑‑ATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTtat                            <  1:3099467/128‑1 (MQ=255)
                                                                                                  aaCCTCCATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTtata                           <  1:2647178/128‑1 (MQ=255)
                                                                                                   aCCTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCAAAAAATTGATAAATATAGATCTGAGTTTCTCTTAAATTTGTTGTTTTTATTTATAGTTtat                            >  2:2326539/1‑128 (MQ=255)
                                                                                                     cTCCATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGAAAGAGATCAACATAAAATTGTAAAATTTAGATATGATTTTGTAATAAATTTCTATTTTTTATTTAAATTATATaa                          >  1:1728281/1‑128 (MQ=255)
                                                                                                       ccATATTACCTATAGAGTTAATG‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATaa                          >  1:1943836/1‑128 (MQ=255)
                                                                                                       ccATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATTGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAg                        >  1:3440323/1‑128 (MQ=255)
                                                                                                        cATATTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGAATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTTTAGTTTTTATTTATATTTTATATAGt                       >  1:2205476/1‑128 (MQ=255)
                                                                                                        cATATTACCTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCATCATAAAATGTTGAAATTTAGATGTGAGTTGGTAATAAATTTTTTGTTTTTATTTATAGTTTATAAAtttt                     >  1:4244421/1‑127 (MQ=255)
                                                                                                         atatTACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGtt                      <  2:3116499/128‑1 (MQ=255)
                                                                                                            ttACCTATAGAGTTAATG‑‑ATATATATATATATATATATATATAT‑T‑CGAGATCTCATAATAAAATTGTTATATATATATCTGATTTGGTGTTATATTTTTATTTTTTATTTATTTTTTATAAATTtaat                   >  1:1343161/1‑128 (MQ=255)
                                                                                                            ttACCTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTtaat                   <  2:3183366/128‑1 (MQ=255)
                                                                                                               ccTATAGAGTTAATG‑‑ATATATATATATATATATATATAT‑‑‑T‑CAAGCGATCAGCATAAAATGGTGAAAATTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAATTTAATAAttt              >  1:2855455/1‑128 (MQ=255)
                                                                                                               ccTATAGAGTTAATG‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAAttt              <  1:2004914/128‑1 (MQ=255)
                                                                                                                cTATAGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAAtt               >  2:177670/1‑128 (MQ=255)
                                                                                                                   tggagTTAATG‑‑ATATATATATATATATATATATATATATGCACGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAAttt              >  2:4392636/3‑128 (MQ=255)
                                                                                                                   taGAGTTAATG‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATTGTGAAATTTAGATCTGAGTTGGTCTTAAATTTTTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAg            >  1:3273427/1‑128 (MQ=255)
                                                                                                                                 tatatatatatatatatatatatatatGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAata  <  2:4551765/128‑1 (MQ=255)
                                                                                                                                 |                                                                                                                               
AAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAATG‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATA  >  CP016816/437755‑438009

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑