Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,8951.T61.1% 1427.9 / inf 711intergenic (+279/+179)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base . (144/131);  new base T (339/93);  total (487/224)
Fisher's exact test for biased strand distribution p-value = 5.95e-13
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 861 total aligned reads displayed.

TTTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑G‑‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAT‑TAAAAAA‑AATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGAT  >  CP016816/203768‑204020
                                                                                                                                        |                                                                                                                                    
tttAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑g                                                                                                                                       >  1:3599373/1‑128 (MQ=255)
  tAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑Tt‑t‑‑‑tt                                                                                                                                  >  1:1132075/1‑128 (MQ=255)
   aaTTTTTTTTTAAAAAAAAAATAAAAATTTTTATTTTAAATACATTTTTAAAAAATCCATTTTTTTATGTTTTTTTTTTT‑AATTATAAAAATTAAAAAGCTTTAAAA‑TTGTTTTTTTTA‑TG‑‑T‑‑tt‑t‑‑‑ttt                                                                                                                                 <  1:1821981/128‑1 (MQ=255)
   aaTTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTTAAGACATTTTTAAAAAAGCCTATTTTATAGGCTTTTTATTTT‑ACTTATCAACATTAAAAAGCTTTTAAA‑TTGTATTTTTTT‑GG‑‑C‑‑TT‑G‑‑‑ttt                                                                                                                                 <  1:3432389/128‑1 (MQ=255)
   aaTTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GT‑‑C‑‑TT‑G‑‑‑ttt                                                                                                                                 >  2:2381270/1‑128 (MQ=255)
       tttttaTTAAAAAAAAATAAAAATTTTTAATTTTATTCCTTTTGTATTAAAGCCTTTGTTCTAGGCTTTTTTTTAT‑AATTATAAAAATTAAAACGCTTTAAAA‑TTGTTTTTTTTT‑GG‑‑C‑‑TT‑G‑‑‑ttttttt                                                                                                                             <  1:4372835/128‑1 (MQ=255)
           ttATAAAAAAAAATAAAAATTTTTAAATTAAAGCCATTTGTAAAAAAGCCTTTGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGATTTCAAA‑GGGTATTTTTTA‑GG‑‑C‑‑TT‑G‑‑‑tttttttt‑‑ttt                                                                                                                       <  2:893654/128‑1 (MQ=255)
            tataAAAAAAAATAAAAATTTTTAATTTAAAGAAATTTTTAAAAAAGCCTATGTTTTTGGGTTTTTATTAT‑AATTTTCAACATTAAAACGCTTTTAAA‑GTTTATTTTTTT‑TG‑‑T‑‑TT‑G‑‑‑tttttttt‑‑tttt                                                                                                                      <  1:2535527/128‑1 (MQ=255)
             ataAAAAAAAATAAAAATTTTTAATTTAAAACCATTTTTAAAAAAGCCTATGTTGTTGGCTTTTTATTAT‑ACTTATCAACATTAAAACGCTTTAAAA‑TTGTTTTTTTTA‑GG‑‑C‑‑TT‑G‑‑‑tttttttt‑‑ttttt                                                                                                                     <  1:4558202/128‑1 (MQ=255)
              ttaaaaaaaaaaaaaaTTTTT‑AATTAAATTAATTTTTTAAAAATTCTTTTTTTTTTGTTTTTTTTTAT‑ACTTTTTAAAATTTAAACGGTTTTAAATTTTTTTTTTTTT‑GG‑‑T‑‑TT‑G‑‑‑tttttttt‑‑tttttt                                                                                                                    <  1:3080215/126‑1 (MQ=255)
              aaaaaaaaaaaaaaaTTTTTTAATTTAAATCCATTTTTAAAAAAGCCTATTTTCTATGCTTTTTATTAT‑AATTAAAAACATTAAAACGCTTTCAAA‑GTGTTTTTTTTA‑GG‑‑C‑‑TT‑G‑‑‑tttttttt‑‑tttttt                                                                                                                    <  1:3161654/127‑1 (MQ=255)
               aaaaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑G‑‑‑tttttttt‑‑ttttttt                                                                                                                   >  2:2073559/1‑128 (MQ=255)
               aaaaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑G‑‑‑tttttttt‑‑ttttttt                                                                                                                   >  2:4318150/1‑128 (MQ=255)
               aaaaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTACGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTAAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑G‑‑‑tatttttt‑‑tttattt                                                                                                                   >  1:2770553/1‑128 (MQ=255)
               aaaaaaaaaTAAAAATTTTTCAATTAAATCCATTTTTAAAAAAGCCTATGTTCTAGGGTTTTTTTTAT‑ACTTAAAAAAATTAAAACGCTTTCAAA‑TTTTTTTTTTTA‑GG‑‑C‑‑TT‑G‑‑‑tttttttt‑‑ttttttt                                                                                                                   <  2:3615716/128‑1 (MQ=255)
                aaaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑G‑‑‑tttttttt‑‑tttttttt                                                                                                                  >  2:824686/1‑128 (MQ=255)
                aaaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑G‑‑‑tttttttt‑‑tttttttt                                                                                                                  >  2:3984668/1‑128 (MQ=255)
                  aaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTATGCTTTTTATTAT‑AATTATCAACATTAAAACGCTTTAAAA‑GTGTATTTTTTA‑GT‑‑A‑‑TT‑G‑‑‑tttatttt‑‑tttttttttt                                                                                                                >  1:2283456/1‑126 (MQ=255)
                  aaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑G‑‑‑tttttttt‑‑tttttttttt                                                                                                                >  2:4149357/1‑126 (MQ=255)
                   aaaaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑AATTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑GA‑‑TTTTTTTT‑‑TTTTTTTTGt                                                                                                                >  2:2022559/1‑128 (MQ=255)
                     aaataaaaatTTTTCATTTAAAGACATTTGTAAAAAATCCATTTTTAATGGGTTTTTATTAT‑AATTATCAACATAACAACGCTTTAAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑G‑‑‑tttttttt‑‑ttttttttttgta                                                                                                             <  2:4368254/128‑6 (MQ=255)
                       ataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑G‑‑‑TTTTTTTT‑‑TTTATTTTTT‑taaaa                                                                                                          >  2:2809394/1‑128 (MQ=255)
                         aaatatTTTTATTTTAAATAAATTTTTAAAAAATCTATTGTTATTGTTTTTTTTTTAT‑AATTATAAAAATTAAAACGCTTTAAAA‑TTTTTTTTTTTAGGG‑‑T‑‑TT‑T‑‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAAt                                                                                                         <  2:2296463/128‑1 (MQ=255)
                          aaaatTTTTTTATTAAATCCTTTTGAAAAAAATCCTTTGTTCTTTGCTTTTTTTTAT‑ACTTATCAACATTACTACGGTTTCAAA‑GTGTATTTTTTA‑GG‑‑CT‑TT‑T‑‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAATa                                                                                                        <  1:2986111/128‑1 (MQ=255)
                          aaaatTTTTTATTTAAAAGCATTTTTAAAAAATCCTATGTTATATGCTTTTTTTTTT‑ACTTATCAACATTAAAACGCTTTTAAA‑TTGTTTTTTTTT‑TG‑‑C‑‑TT‑GT‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAATa                                                                                                        <  1:3483750/128‑1 (MQ=255)
                           aaatTTTTTATTTAAATGAATTTGTAAAAAAGCATATTTTTTAGGCTTTTTATTTTAAATTAT‑AACATTAAAACGCTTTCAAA‑GTTTATTTTTTT‑GGGTT‑‑TT‑T‑‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAATa                                                                                                        <  1:514904/128‑1 (MQ=255)
                           aaatTTTTCATTCAAATCCATTTGTAAAAAAGCCTTTGTTCTATGCTTTTTATTAT‑ACTTATAAAAATTAAAAATCTTTAAAA‑TTGTATTTTTTA‑GG‑‑C‑‑TT‑GTT‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAATa                                                                                                        <  2:3866199/128‑1 (MQ=255)
                           aaatTTTTAATTTAAAGCATTTTTTAAAAAATCATATTTTTTTGTTTTTTTATTAT‑AATTATAAAAATTAAAACGGTTTAAAA‑GTTTTTTTTTTA‑TG‑‑C‑‑TT‑GT‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAATaa                                                                                                       <  1:1670332/128‑1 (MQ=255)
                            aatTTTTTAATTAAACCCATTTTTAAAAAACCCTATTTTATATGCTTTTTATTAT‑ACTTTTAAAAATTAAAACCCTTTCAAA‑TTGTTTTTTTTT‑TG‑‑C‑‑TT‑GT‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAATaaa                                                                                                      <  1:4299339/128‑1 (MQ=255)
                            aatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑G‑‑‑‑‑TTTTTT‑‑TTTTTTTTGT‑AAAAATAAAAGt                                                                                                   >  1:3694245/1‑128 (MQ=255)
                             atTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑G‑‑‑TTTTTTTT‑‑TTTTTTTTTT‑TTaaaaaaaaa                                                                                                    >  1:3906597/1‑127 (MQ=255)
                                tttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACTCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑GTT‑TTTTTTTT‑‑TTTTTTTTTT‑AAAAATaaaaat                                                                                                   >  1:2847735/1‑126 (MQ=255)
                                 ttaaTTTAAACCCATTTGTAAAAAAGCCAATGTTCTAGGCTTTTTATTAA‑AATTAACAACAATACAACGCTTTCAAA‑TTGTATTTTTTA‑GG‑‑CTTTT‑T‑‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAATAAAAGTa                                                                                                  <  2:3927779/125‑1 (MQ=255)
                                     tttAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑GT‑‑TTTTTTTT‑‑TTTTTTTTTT‑AAAATTAAAATTTAGAtt                                                                                             >  1:3653079/1‑128 (MQ=255)
                                      ttAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑GTTTTTTTTTTT‑‑TTTTTTTTGT‑AAAAATAAAATTaaata                                                                                              >  2:1319288/1‑125 (MQ=255)
                                        aaatcaaTTTTTAAAAAAGCCTATTTTCTAGGCTTTTTATTAT‑AATAATAAACATTAAAACCCTTTAAAA‑GTTTTTTTTTTT‑GG‑‑C‑‑TT‑G‑‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGa                                                                                         <  1:3872771/122‑1 (MQ=255)
                                        aaaTCCATTTTTAAAAAAGCCTATTTTATATGCTTTTTATTAT‑ACTTATCAAAATTACAACTCTTTAAAA‑TTTTATTTTTTA‑GG‑‑C‑‑TT‑GT‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAATAAAAGTAAGATTTgg                                                                                          <  1:4149357/128‑1 (MQ=255)
                                        aaaGCATTTTGTAAAAAATCCTATTTTATATGTTTTTTATTAA‑AATTATCAAAATTAAAACCCTTTTAAA‑TTGTTTTTTTTT‑GG‑‑C‑‑TT‑GT‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAATAAAAGTAAGATTTgg                                                                                          <  1:2005461/128‑1 (MQ=255)
                                         aaGCCATTTGTTAAAAATCCTATGTTTTATGGTTTTTATTTT‑ACTTATCAACATTACAACGCTTTCAAA‑TTGTTTTTTTTT‑GG‑‑G‑‑TT‑GT‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGa                                                                                         <  2:3703538/128‑1 (MQ=255)
                                          atacATTTTTAAAAAATCATTTTTTATAGTTTTTTTATTTT‑AATTAACTAAAATACAACTCTTTTAAATGTTTTTTTTTAG‑GG‑‑T‑‑TT‑T‑‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGAt                                                                                        <  1:4220727/125‑1 (MQ=255)
                                             cttttGTAAAAAAGACTTTTTTTTAGTTTTTTTATTAT‑TATTATAAAAATTAAATCTCTTTAAAA‑GTTTTTTTTTTT‑GG‑‑G‑‑TT‑GT‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCaa                                                                                     <  1:4087601/126‑1 (MQ=255)
                                                ttGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑GT‑‑TTTTTTTT‑‑TTTTTTTTTT‑AAAAATAAAATTAAGATTTTGATAAAACa                                                                                  >  2:621078/1‑128 (MQ=255)
                                                  ttAAAAAACCATATTTTTTATGCTTTTTTTTAT‑AATTATAAACATTTAAATTGTTTAAAT‑GTTTATTTTTTA‑GG‑‑T‑‑TT‑G‑‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCaaaa                                                                               <  2:1531443/127‑1 (MQ=255)
                                                  gTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑G‑‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAATAAAATATATATTTTGATACACCaaaa                                                                               >  1:3762995/1‑128 (MQ=255)
                                                   tAAAAAATCCTTTTTTTTTGTTTTTTTATTTT‑AATTTTAAAAATTAAAAATCTTTCAAA‑TTGTATTTTTTT‑GG‑‑C‑‑TT‑GT‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCaaaa                                                                               <  1:1470862/128‑1 (MQ=255)
                                                   tAAAAAATCATATTTTTTATTTTTTTTATTAT‑AATTATAAAAATTAAAACTCTTTTAAA‑TTTTATTTTTTA‑TG‑‑CT‑TT‑T‑‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCaaaa                                                                               <  2:3899647/128‑1 (MQ=255)
                                                   tAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑GT‑‑TTTTTTTT‑‑TTTTTTTTTT‑AAAAAAAAAATTAATATTTGGTTAAACCaaaa                                                                               >  2:3166706/1‑128 (MQ=255)
                                                    aaaaaaGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TTGG‑‑‑TTTTTTTT‑‑TTTTTTTTGT‑TAAAATAAAATTAATAATTGTTTCAACCAAAAc                                                                              >  1:746852/1‑128 (MQ=255)
                                                    aaaaaaGCCTATGTTATTTGCTTTTTATTTT‑ACTTATCAACATTACAACGCTTTAAAA‑GTGTATTTTTTA‑TT‑‑G‑‑TT‑GT‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAAc                                                                              <  2:3540408/128‑1 (MQ=255)
                                                        aaccatATGTTCTATTCTTTTTTTTAT‑AATTATAAACAATACAACGCTTTCAAA‑TTGTATTTTTTA‑GG‑‑C‑‑TT‑G‑‑‑‑‑TTTTTT‑‑TTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCa                                                                       <  1:4046742/123‑1 (MQ=255)
                                                         atccTATGTTATATTGTTTTTATTAT‑AATTATCAAAATTAAAACGCTTTAAAA‑GTTTTTTTTTTA‑GG‑‑C‑‑TT‑GT‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTatat                                                                         <  2:3452424/126‑1 (MQ=255)
                                                          gacTATTTTCTAGGCTTTTTATTAT‑AATTATCAACATTACAACCCTTTAAAA‑GTTTATTTTTTA‑GG‑‑C‑‑T‑‑‑‑‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCaaa                                                                     <  2:533822/126‑1 (MQ=255)
                                                           ccTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑GTT‑TTTTTTTT‑‑TTTTTTTTTT‑AAAAATAAAAATAAATTTTGTATAAACAAAAAatattat                                                                        >  2:1684999/1‑125 (MQ=255)
                                                             tATGTTATATGGTTTTTTTTAT‑AATTTTTAACATATAAACCCTTTTAAA‑TTGTTTTTTTTT‑TG‑‑CT‑TT‑T‑‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCaaa                                                                     <  1:3542233/128‑1 (MQ=255)
                                                             tATGTTATATGATTTTTATTAT‑ATTTATAAAATTTAAAAAGATTTCAAA‑TTGTATTTTTTA‑TG‑‑C‑‑TT‑G‑‑‑‑‑‑‑TTTT‑‑TTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAt                                                                <  2:2139981/128‑1 (MQ=255)
                                                                gTTCTAGGCTTTTTATTTT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑GT‑‑TTTTTTTT‑‑TTTTTTTTTT‑ATAATTAATATTAAGATTTGGTTCAAACATAACTATAACaaaaaa                                                                  >  2:1389208/1‑128 (MQ=255)
                                                                 ttcattgttttttATTTT‑AATTATAAAAATTATAACTATTTAAAA‑GTTTTTTTTTTA‑GGT‑T‑‑TT‑T‑‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCaaaaaaa                                                                 <  2:3796490/120‑1 (MQ=255)
                                                                 ttCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑GT‑‑TTTTTTTT‑‑TTTTTTTTTT‑AAAAATAAATGTTAGATTTGGATCAACCAAACGTTTATaaaaaaaa                                                                 >  1:1021592/1‑128 (MQ=255)
                                                                  tCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑GT‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAAAAAAATTAAAATTTTTATAAACCAAATATAAATAAAAAAAAt                                                                >  2:1587698/1‑128 (MQ=255)
                                                                  catAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑GT‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAATAAAAATATAATTTTGATAAACCAAAACATTTTAAAAAAAAt                                                                >  1:2417702/3‑128 (MQ=255)
                                                                    tAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑GT‑‑TTTTTTTT‑‑TTTTTTTTTT‑AAAAATAAAATTAAAATTTGGAAAACCCAAAAATAAATAAAAAAAAT‑Ta                                                             >  1:4434553/1‑128 (MQ=255)
                                                                    tAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑GT‑‑TTTTTTTT‑‑TTTTTTTTTT‑AAAAAAAAATTTAATATTTGGATAAACAAAAAATATTTCAATAAAAtaa                                                              >  2:1804204/1‑126 (MQ=255)
                                                                      tgtttttttttAA‑AATTTTAAAAATTAAAACGCTTTAAAATGTTTTTTTTTTG‑GT‑‑T‑‑TT‑T‑‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAT‑Taaa                                                           <  1:3822748/125‑1 (MQ=255)
                                                                          ttttATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑GTT‑TTTTTTTT‑‑TTTTTTTTTT‑AAAAATAAAATTAAAATTTTGATAAAACAAAAATAAATAAAAAAAAT‑Taaaaaa                                                        >  2:2506141/1‑128 (MQ=255)
                                                                            ttattaT‑ACTTATAAAAATTACAACGCTTTAAAA‑TTGTATTTTTTA‑TG‑‑A‑‑TT‑G‑‑‑‑‑‑TTTTT‑‑TTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAACT‑TAAAAAA‑AAtagtt                                                <  2:4215620/128‑1 (MQ=255)
                                                                                 at‑aCTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑GT‑‑TTTTTTTT‑‑TTTTTTTTTT‑AAAAAAAAAATTAAAATTTTGATCAACCAAAAATATttaaaaaaaat‑taaaaaa‑aaattatt                                               >  2:2606484/1‑122 (MQ=255)
                                                                                 at‑aATTATTAAAAATATAAAGGTTTTAAA‑TTGTTTTTTTTA‑TG‑‑C‑‑TT‑GT‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAT‑TAAAAAA‑AAtagttt                                               <  1:977848/128‑1 (MQ=255)
                                                                                    aCTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑GTTTTTTTTTTT‑‑TTTTTTTTTT‑AAAAATAAAATTAAAATTT‑GTTTAAACAAAAAAATAAAAAAAAAAA‑TAAAAAA‑AAaaatttt                                              >  1:2155574/1‑127 (MQ=255)
                                                                                     tttATCAAAATTACTACGATTTAAAA‑TTGTATTTTTTA‑TG‑‑G‑‑TT‑G‑‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAT‑TAAAAAA‑AAtagtttagtt                                           <  2:1131613/127‑1 (MQ=255)
                                                                                      ttATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑G‑‑‑TTTTTTTT‑‑TTTTTTTTTT‑TAAAATAAAAGTATGATTTGGTTCAACCAAAACTATATCAAAAAAAT‑TAAAAAA‑AAtagtttatttt                                          >  1:3344592/1‑127 (MQ=255)
                                                                                      ttATCAAAATTGAAAAGGTTTCAAT‑TTGTATTTTTTA‑GG‑‑A‑‑TT‑G‑‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAT‑TAAAAAA‑AATAGTTTAGTTg                                          <  2:4446661/128‑1 (MQ=255)
                                                                                       tATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑GT‑‑TTTTTTTT‑‑TTTTTTTTTT‑AAAAAAAAAAATAATATTTGGATCAACCAAAACAATAAAAAAAAAAT‑TAAAAAA‑AAtatgttagtta                                          >  1:1557154/1‑127 (MQ=255)
                                                                                        aTCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑GTT‑TTTTTTTT‑‑TTTTTTTTTT‑AAAAAAAAAAGTAATATTTTG‑TTAAAAAAAAAAAAATAAAAAAAAT‑TAAAAAATAAaagtttgttta                                          >  2:3064414/1‑123 (MQ=255)
                                                                                         tCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑G‑‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAACATATAACAaaaaaat‑taaaaaa‑attatataatttgatt                                       >  2:3500796/1‑116 (MQ=255)
                                                                                            aCATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑GT‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAATAAAAGTAATATTTGGATCAACAAAAACTATATAAAAAAAAT‑TAAAAAA‑AATattttattttatttt                                     >  2:2746014/1‑128 (MQ=255)
                                                                                             cATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑G‑‑‑TTTTTTTTTATTTTTTTTTT‑AAAAATAAAAGAAATAATTTATGAAAACAAAAATTAATAAAAAAAATATAAAAAA‑AAttatttatttattat                                      >  1:4507341/1‑123 (MQ=255)
                                                                                             cATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑G‑‑‑TTTTTTTT‑‑TTTTTTTTTTAAAAAATAAAATTAATTTTTGGATACGCCAAAAATATATAAAAAAAAT‑TAAAAAA‑AATATTTTTGTTGAtttta                                    >  2:1459510/1‑127 (MQ=255)
                                                                                              aTTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑GT‑‑TTTTTTTT‑‑TTTTTTTTTT‑AAAAAAAAAATTAATATTTTGATAAAACAAAAAAATTAAAAAAAAAA‑TAAAAAA‑AAtagtttattgtattttca                                   >  1:2357641/1‑117 (MQ=255)
                                                                                              aTTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑G‑‑‑TTTTTTTT‑‑TTTTTTTTTTAAAAAATAAAAGTAAGATTTTGTTCAACCAAAACTAAATAAAAAAAAT‑TAAAAAA‑AAAATTTtagtttagttaaa                                   >  2:2444278/1‑125 (MQ=255)
                                                                                               ttACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑GTTTTTTTTTTT‑‑TTTTTTTTTT‑AAAAATAAAAGTAATATTTGGATAAACCAAAACTTATTAAAAAAAAT‑TAAAAAA‑AATATTTTATTTTAGTTTc                                    >  2:1076517/1‑128 (MQ=255)
                                                                                               ttACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑GT‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAATAAAATTAAGATTTGGATCAACCAAAACTAAATAAAAAAAAT‑TAAAAAA‑AAAATTTTATTTTAGTTTaaa                                  >  2:4040021/1‑128 (MQ=255)
                                                                                               ttAAAACGATTTCAAA‑GTTTATTTTTTA‑GG‑‑CT‑TT‑T‑‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAT‑TAAAAAA‑AATAGTTTAGTTGAGTTTCaa                                  <  2:3770645/128‑1 (MQ=255)
                                                                                                tACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑GT‑‑TTTTTTTT‑‑TTTTTTTTTT‑AAAAAAAAAATAAAAATTTGGAAAACCCAAAAAAAAATAAAAAAAAT‑TAAAAAA‑AAaattttatttttatttaaaa                                 >  1:3931994/1‑118 (MQ=255)
                                                                                                 aCAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑GTT‑TTTTTTTT‑‑TTTTTTTTTT‑AAAAAAAAAATTAATATTTTTATAAAACAAAAAAATATAAAAAAAAT‑TAAAAAA‑AATATTTTATTTTATTTTaaaa                                 >  2:3385692/1‑128 (MQ=255)
                                                                                                 aCAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑GT‑‑TTTTTTTT‑‑TTTTTTTTTT‑AAAAAAAAAAGTAATATTTGTTTAAAACAAAAATAAATAAAAAAAAT‑TAAAAAA‑AATATTTTTTTTGATTTTAAAAt                                >  2:1924271/1‑128 (MQ=255)
                                                                                                    aCGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑GT‑‑TTTTTTTT‑‑TTTTTTTTTT‑AAAAATAAAATTAAAATTTGGAAAAAAAAAAACTATTTAAAAAAAAT‑TAAAAAA‑AATATTTTATTTTAGTTTCAAAtaga                             >  1:1354397/1‑125 (MQ=255)
                                                                                                    aCGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑GT‑‑TTTTTTTT‑‑TTTTTTTTTT‑AAAAAAAAAAATAATATTTTTAAAAAAAAAAAATAAATAAAAAAATA‑TAAAAAA‑AAAAATTTAATTAAATTTaaatatat                             >  2:1243677/1‑123 (MQ=255)
                                                                                                     cGCTTTCAAA‑GTGTTTTTTTTT‑GG‑‑G‑‑TT‑GT‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAT‑TAAAAAA‑AATAGTTTAGTTGAGTTTCAAATCTGc                            <  1:574457/128‑1 (MQ=255)
                                                                                                      gCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑GTT‑TTTTTTTT‑‑TTTTTTTTTT‑AAAAATAAAAGTAATATTTGTATCAACAAAAAAATTATAAAAAAAAA‑AAAAAAA‑AATAGTTTTTTTAAGTTTAAACTCTgg                            >  2:2992977/1‑127 (MQ=255)
                                                                                                      gCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑GT‑‑TTTTTTTT‑‑TTTTTTTTTT‑AAAAATAAAATTAATATTTGGATCACCCAAAACTATATAAAAAAAAA‑TAAAAAA‑AATAGTTTATTTGTTTTTAAAATCTgaa                           >  2:2892632/1‑126 (MQ=255)
                                                                                                        tttCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑GT‑‑TTTTTTTT‑‑TTTTTTTTTT‑AAAAAAAAAATTAAATTTTGGATAAACAAAAAAAAAAACAAAAAAAT‑TAAAAAA‑AAAAATTTATTTTATTTTCaaaagaaaata                         >  1:1255888/1‑120 (MQ=255)
                                                                                                         ttCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑G‑‑‑TTTTTTTT‑‑TTTTTTTTTT‑AAAAATAAAAGTAAGATTTGGATAAACCAAAAAAATATAAAAAAAAT‑TAAAAAA‑AATAGTTTAGTTTAATTACAAATCTCCatata                       >  2:3662240/1‑128 (MQ=255)
                                                                                                          tCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑GT‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAATAAAATAAAGATTTGGATAAACCAAAACGATTTCAAAAAAAT‑TAAAAAA‑AAATGTTTATTTGAGTTTCAAAACGTCatata                       >  2:2246558/1‑128 (MQ=255)
                                                                                                             aa‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑GT‑‑TTTTTTTT‑‑TTTTTTTTTT‑AAAAATAAAATTAAAATTTGTATAAACAAAAACTATTAAAAAAAAAT‑TAAAAAA‑AATATTTTATTAGAGTTTAAATTCTTaataaatat                    >  2:69610/1‑127 (MQ=255)
                                                                                                                tttatttttttT‑GG‑‑T‑‑TT‑T‑‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAATTAAAGTAAGATTTGGTTCAACAAAAACTATATCAAAAAAAT‑TAAAAAA‑AATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTAc                 <  2:4509173/123‑1 (MQ=255)
                                                                                                                  gtATTTTTTA‑GG‑‑C‑‑TT‑GT‑‑TTTTTTTT‑‑TTTTTTTTTT‑AAAAATAAAAGTAATATTTGGAACAACCAAAAATATATAAAAAAAAT‑TAAAAAA‑AAAAGTTTAGTTTATTTTCAAATATTAAAATATAGTACa                >  1:1590550/1‑128 (MQ=255)
                                                                                                                   tATTTTTTA‑GG‑‑C‑‑TT‑GTTTTTTTTTTT‑‑TTTTTTTTGT‑AAAAATAAAAGTAATATTTGGATAAACAAAATCTATATAAAAAAAAT‑TAAAAAA‑AATATTTTATTTTATTTTAAAAAATTAATATATATTaa                 >  2:2661215/1‑127 (MQ=255)
                                                                                                                       ttttA‑GG‑‑C‑‑TT‑GTT‑TTTTTTTT‑‑TTTTTTTTTT‑AAAAAAAAAAGTAAATTTTGTAACAACCAAAAGTATATAAAAAAAAT‑TAAAAAA‑AAAATTTTTTTTGTGTTTAAAATAGTCATATATAGAACAAAgt            >  2:460823/1‑127 (MQ=255)
                                                                                                                       ttttA‑GG‑‑C‑‑TT‑GT‑‑TTTTTTTT‑‑TTTTTTTTTT‑AAAAATAAAATTATTTTTTTGTTAAACCAAAAAAAAAAAAAAAAAAT‑AAAAAAA‑AAAATTTTATTTTATTTAAAAATATGCATTTATAGTACAAAGGa           >  1:3984687/1‑128 (MQ=255)
                                                                                                                          tA‑GG‑‑C‑‑TT‑GT‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAAATATATAAAAAAAAT‑TAAAAAA‑AATATTTTAGTTGAGTTTAAAATATGCATATATATTAAAAAGTAAtt        >  2:32443/1‑128 (MQ=255)
                                                                                                                                        |                                                                                                                                    
TTTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAA‑GTGTATTTTTTA‑GG‑‑C‑‑TT‑G‑‑‑TTTTTTTT‑‑TTTTTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAT‑TAAAAAA‑AATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGAT  >  CP016816/203768‑204020

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑