BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP016816	= 437880	114 (0.160)	206 (0.240) +ATAT	68/186	21.8	57.9%	intergenic (‑184/+238)	JCVSYN2_01985/JCVSYN2_01990	glycosyl transferase/ABC transporter permease
*	?	CP016816	437881 =	163 (0.180)	206 (0.240) +ATAT	68/186	21.8	57.9%	intergenic (‑185/+237)	JCVSYN2_01985/JCVSYN2_01990	glycosyl transferase/ABC transporter permease
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 375 total aligned reads displayed.

GAAACTTATTTTTGTAGTTGTAAGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAAT  >  CP016816/437754‑438008

gAAACTTATTTTTGTAGTTGTAAGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAACCCTCAATATTACCTATAGAGTTATT‑‑G‑‑‑‑‑‑‑‑a                                                                                                                                     >  1:390010/1‑128 (MQ=255)

gAAACTTATTTTTGTAGTTGTAAGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑a                                                                                                                                     >  2:937786/1‑128 (MQ=255)

gAAACTTATTTTTGTAGTTGTAAGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑a                                                                                                                                     >  1:1589567/1‑128 (MQ=255)

gAAACTTATTTTTGTAGTTGTAAGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑a                                                                                                                                     >  2:1607862/1‑128 (MQ=255)

 aaaCTTATTTTTGTAGTTGTAAGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑at                                                                                                                                    >  1:1419882/1‑128 (MQ=255)

   aCTTATTTTTGTAGTTGTAAGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑atat                                                                                                                                  >  2:209469/1‑128 (MQ=255)

    cTTATTTTTGTAGTTGTAAGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑atata                                                                                                                                 <  2:1217192/128‑1 (MQ=255)

      tATTTTTGTAGTTGTAAGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGAAAAAACCTCCATATTACCTATAGAGTTAAT‑‑t‑‑‑‑‑‑‑‑atatat‑‑a                                                                                                                             >  2:706666/1‑128 (MQ=255)

       aTTTTTGTAGTTGTAAGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAATTATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGATAAT‑‑T‑‑‑‑‑‑‑‑atatat‑‑at                                                                                                                            >  1:720581/1‑128 (MQ=255)

       aTTTTTGTAGTTGTAAGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑atatat‑‑at                                                                                                                            >  1:837123/1‑128 (MQ=255)

        tttttGTAGTTGTAAGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAATCAAAGCAAAAACCTCAATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑atatat‑‑ata                                                                                                                           >  2:1523156/1‑128 (MQ=255)

        tttttGTAGTTGTAAGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑atatat‑‑ata                                                                                                                           >  1:1331809/1‑128 (MQ=255)

        tttttGTAGTTGTAAGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑atatat‑‑ata                                                                                                                           >  2:87776/1‑128 (MQ=255)

        tttttGTAGTTGTAAGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATAATACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑atatat‑‑ata                                                                                                                           >  1:1229033/1‑128 (MQ=255)

           ttgtatttgtatGTTTCA‑TTTTTAATAAATATTATAAATAAAAATTTTATTTTTAAAATAAATATTTTAGTAAATGAATCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑atatat‑‑atata‑‑t                                                                                                                      <  1:622208/128‑1 (MQ=255)

           ttGTAGTTGTAAGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑atatat‑‑atata‑‑t                                                                                                                      >  2:1686888/1‑128 (MQ=255)

            tacaaaaatAAGTTTCATTTTTTATTAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGCAAATGAAGCAAATCAAAAACCTCCAAATTACATATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑atatat‑‑atata‑‑t                                                                                                                      >  1:100244/9‑128 (MQ=255)

             acaaaaatAAGTTTCATTTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑atatat‑‑atata‑‑ta                                                                                                                     >  1:1976680/8‑128 (MQ=255)

              tAGTTGTAAGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑atatat‑‑atata‑‑tata                                                                                                                   >  1:419856/1‑128 (MQ=255)

               aGTTGTAAGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑atatat‑‑atata‑‑tatat                                                                                                                  >  2:629131/1‑128 (MQ=255)

               aGTTGTAAGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑atatat‑‑atata‑‑tatat                                                                                                                  >  1:363751/1‑128 (MQ=255)

                gTTGTAAGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAATCAAAAACCTACATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑atatat‑‑atata‑‑tatata                                                                                                                 >  2:1052955/1‑128 (MQ=255)

                 ttttaatattCA‑TTTTTAATAAATATTAGAAATAAAAATTTTATTTTTAAAATAAATATTTTATGAAATGAAGCAAAGCAAAAACCTCCATATAACCTATAGAGATAAT‑‑G‑‑‑‑‑‑‑‑atatat‑‑atata‑‑tatatat                                                                                                                <  2:778203/120‑1 (MQ=255)

                 ttGTAAGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑atatat‑‑atata‑‑tatatat                                                                                                                >  2:284766/1‑128 (MQ=255)

                  tGTTAGTTTCA‑TTTTTAATAAATATTATAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATTAAGCAAATCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑atatat‑‑atata‑‑tatatata                                                                                                               <  1:1779593/128‑1 (MQ=255)

                  tGTAAGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑atatat‑‑atata‑‑tatatata                                                                                                               >  1:1207549/1‑128 (MQ=255)

                   gTAAGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑atatat‑‑atata‑‑tatatatat                                                                                                              >  2:731374/1‑128 (MQ=255)

                     aaGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑atatat‑‑atata‑‑tatatatatat                                                                                                            >  2:1368390/1‑128 (MQ=255)

                               ttttAATATATATTATAAATTTAAATTGTATTTTTAAAATAAATATTTTTGGAAATGAAGCAAAGAAAAAACCTCAATATTAAATATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑atatat‑‑atata‑‑tatatatatatatatcatta                                                                                                   <  1:216244/128‑6 (MQ=37)

                               ttttAATAAATATTATAAATAAAAATTGTATTTTTAAAATAAATATTTTATTAAATGAAGCAAAGCAAAAACATCCATATTAACTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑atatat‑‑atata‑‑tatatatatatatatatata                                                                                                   <  2:1639315/128‑4 (MQ=255)

                                ttttatatatattttatatataTATTTTATTTTTAAAATAAATATTTTATTTAAACAATAAAACAAAAAAAATATATATAAAATATATATATTAT‑‑G‑‑‑‑‑‑‑‑atatat‑‑atata‑‑tatatatatatatatatatat                                                                                                  <  1:243082/128‑5 (MQ=255)

                                tttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑atatat‑‑atata‑‑tatatatatatatatatatat                                                                                                  >  2:1769153/1‑124 (MQ=255)

                                  taataaATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑‑‑ATAT‑‑ATATA‑‑TATATATATATATATATGCAAGCGa                                                                                              >  2:1739140/1‑128 (MQ=255)

                                   aataaataTTATAAATAAAAATTTTATTTTTAAAATAAATATTTTATTATATGAAGCAAATCAAAAAAATCCATATTAACTATATAGATAAT‑‑T‑‑‑‑‑‑‑‑atatat‑‑atata‑‑tatatatatatatatatatatatg                                                                                               <  1:928584/128‑8 (MQ=255)

                                    ataaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAAACTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑‑‑ATAT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATc                                                                                            <  2:664117/128‑1 (MQ=255)

                                       tatatTAGATATATTAATTTTATTTTTATAAAAAATATTTTATTATATTAATAAAAAAAAAAAAATCAATATATTATATAGAGTTAAT‑‑T‑‑‑‑‑‑‑‑ttatat‑‑atata‑‑tatatatatatatatatatatatgcaag                                                                                           <  2:1207549/127‑12 (MQ=255)

                                       aataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCATAGAAAAAACCTCTATATTACCTATAGAGTTAAT‑‑GAT‑‑‑‑‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATGCAAGCGAt                                                                                             <  1:895524/128‑1 (MQ=255)

                                       aataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCa                                                                                           >  1:1794365/1‑128 (MQ=255)

                                       aataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATGAAAGAGATCa                                                                                           >  2:440625/1‑128 (MQ=255)

                                        aaataataaaTAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGACGCACATCAAAAAACACTATATAACCTATAGAGATAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑T‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCAGCATaaa                                                                                    <  1:1284009/121‑1 (MQ=255)

                                         tatTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAAACTCTATATTACCTATAGAGTTAAT‑‑T‑‑‑‑‑‑‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCAGc                                                                                         <  2:456820/128‑1 (MQ=255)

                                          atTAGAAAAAAAAATTGTATTTTTAAAATAAATATTATAGGAAATCAAGCATAGCAAAAACCTCAATATTACCTATAGAGATAAT‑‑G‑‑‑‑‑‑‑‑‑‑ATAT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCAGCATa                                                                                      <  2:881761/128‑1 (MQ=255)

                                            tatataTAAATATTGTATTTTTAATATATATATTTTTGTTAATTACTCAAAGCAAAAACATCAATATTAACTATAGAGATATT‑‑GAT‑‑‑‑‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCAGCa                                                                                        <  2:1460119/123‑1 (MQ=255)

                                            tataaaTAAAAATTTTATTTTTAAAATAAATATTTTATTAAATGAAGAAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCAGCATa                                                                                      <  1:1697318/125‑1 (MQ=255)

                                            tAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATAT‑‑ATATA‑‑T‑T‑TATATATATATATGCAAGAGAGCAGCATata                                                                                    >  1:1953628/1‑126 (MQ=255)

                                             aGAAATAAAAATAGTATTTTTATAATAAATATTTTAGGAAATGAAGCAAAGAAAAAACATCCATATTAAATATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCAGCATaa                                                                                     <  2:109033/128‑1 (MQ=255)

                                               aaaTAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCAGCATaaaa                                                                                   <  2:1794365/128‑1 (MQ=255)

                                               aaaTAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCAGAATaaaa                                                                                   >  2:844143/1‑128 (MQ=255)

                                                 aTAAAAATTTTATTTTTAAAATATATATTTTATTAAATTAATAAAATAAAAAAACTCTATATAAAATATAGAGTTAATTAT‑‑‑‑‑‑‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCAGCATaaaa                                                                                   <  2:599796/128‑1 (MQ=255)

                                                   aaaaaTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATAT‑‑ATATA‑‑TATATATATATATAtgtg                                                                                                     >  2:82796/1‑106 (MQ=255)

                                                           tATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATAT‑‑ATATA‑‑TATATATATATATATTTGCACGAGATCAGCATAAAATGGTGAAATTTa                                                                       >  1:744769/1‑128 (MQ=255)

                                                              ttttAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑GATAT‑‑‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATGCAAGCGCTGAGCATAAAATGGTGAAtttt                                                                        >  2:1327749/1‑128 (MQ=255)

                                                               tttAAAATAAATATTTTATGAAAATAATCAAACCAAAAACCTCAATATTAACTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATc                                                                   <  1:513585/128‑1 (MQ=255)

                                                               tttAAAATAAATATATTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACATATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑‑‑ATAT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTg                                                                 <  1:335497/128‑1 (MQ=255)

                                                                ttAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑GATAT‑‑‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATAAAAGCTATCATCATAAAATGGTGATATTTAg                                                                      >  2:1435218/1‑128 (MQ=255)

                                                                ttAAAATAAATATATTTGGAAATTAACCAAAGCAAAAACCTCCATATAAACTATAGAGTTAAT‑‑GATATATATATATAT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAAt                                                                          <  1:472257/128‑1 (MQ=255)

                                                                 tAAAATAAATATTTTAGGAAATGAAGCACAGCAAAAAACTCCATATTAGCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑‑‑ATAT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAg                                                               <  2:1390874/128‑1 (MQ=255)

                                                                 tAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATTT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCAGCATACAATGGTGAATTTTAGATCTg                                                                 >  2:382636/1‑128 (MQ=255)

                                                                  aaaaTAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑‑‑ATAT‑‑ATATA‑‑TATATATATATATATATGCAAGAGATAAGAATAAAATTTTGAAATTTATATCTGAGt                                                              >  1:639780/1‑128 (MQ=255)

                                                                   aaataaatATTTTATGAAATGAAGAAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAg                                                               <  1:1645426/128‑1 (MQ=255)

                                                                        aataTTTTACTAAATGAACCATATCAAAAACCTCAATATTATCTATATAGTTAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTa                                                      <  2:358564/128‑1 (MQ=255)

                                                                         atatTTTAGGAAATGAAGCAAAGCAAAAACATCAATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑‑‑‑‑AT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTaa                                                     <  2:1506450/128‑1 (MQ=255)

                                                                         atatTTTAGCAAATCAACCAAACAAAAAACCTCCATATTATCTCTAGAGTTATT‑‑GATAT‑‑‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGtt                                                             <  2:556253/128‑1 (MQ=255)

                                                                           atTTTATTAAATGAAGCAAATCAAAAACATCAATATTATCTATAGAGTTAAT‑‑GATATAT‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGtt                                                             <  1:686172/128‑1 (MQ=255)

                                                                            ttttAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATAT‑‑ATATATTTATATATATATATATATACAAGCGATCATCATAAAATTGAGATATTTAGATCTGATTTAGTca                                                        >  2:1259479/1‑127 (MQ=255)

                                                                             tttAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑A‑‑TATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGtt                                           <  1:1717543/128‑1 (MQ=255)

                                                                               tAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑‑‑‑‑AT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCAGCATAAAATGGTGATATTTAGATCTGAGTTGGTCTTAAAtagat                                               >  2:15497/1‑124 (MQ=255)

                                                                                attataTGAATCAAAGAAAAAACCTCGATATTACCTATAGAGTTAAT‑‑GAT‑‑‑‑‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATGCATGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTaaa                                                    <  2:1130161/123‑1 (MQ=255)

                                                                                 ggAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATGAAAGCGATCAGCATAAATTGTTGATATTTAGATATGAGTAGGTATTAAAttt                                                 >  2:1750947/1‑128 (MQ=255)

                                                                                   aaaTGAAGCTAATAAAAAAACTCTATATTAACTATATAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGt                                               <  1:1441802/128‑1 (MQ=255)

                                                                                      tGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑GATAT‑‑‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATGCAAGAGATCAGCATAAAATTGTGAAATTTAGATCTGAGTTTGTCTTAAAtttc                                                >  2:1828507/1‑127 (MQ=255)

                                                                                       caagaacataaaaaaCCTCAAAATTAAATATAGAGTTATT‑‑GATAT‑‑‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGt                                               <  1:1909537/118‑1 (MQ=255)

                                                                                         agcaaagcaaAAACCTCCATATTACCTATAGAGTTAAT‑‑GATAT‑‑‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATGCACGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTTGTGTTAAATTTGttg                                             >  1:141375/1‑126 (MQ=255)

                                                                                          gcaatccaaaAACATCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑‑‑‑‑AT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGGCTTAAATTTGTAGTTtttattt                                    <  2:1191113/122‑1 (MQ=255)

                                                                                             aacaaaaaaCATCAATATTAACTATAGAGTTAAT‑‑GATAT‑‑‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGtttt                                         <  2:238520/124‑1 (MQ=255)

                                                                                                caaaAACCTCCATATTACCTATAGAGTTAAT‑‑GATAT‑‑‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttat                                      >  2:1898917/1‑128 (MQ=255)

                                                                                                aaaaaaCCTCTATATTACCTATAGAGTTAAT‑‑GAT‑‑‑‑‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttattt                                    <  1:1171085/127‑1 (MQ=255)

                                                                                                  aaaaCCTCCATATTACCTATAGAGTTAAT‑‑GATATAT‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCAGCATAAAATGGTTATATATATATCTGATTTGGTCTTAAATTTTTAGTTtttat                                      >  2:1949086/1‑128 (MQ=255)

                                                                                                  aaaaCCTCCATATTACCTATAGAGTTAAT‑‑GAT‑‑‑‑‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCATCATAAAATTGTGAAATTTAGATCTGTGTTGGTCTTATATTTTTAGTTTttatttat                                  >  1:807541/1‑128 (MQ=255)

                                                                                                   aaaCCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑‑‑ATAT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGttt                             >  2:260582/1‑128 (MQ=255)

                                                                                                     aCCTCAATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑‑‑ATAT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTtat                           <  1:350803/128‑1 (MQ=255)

                                                                                                      ccTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTta                            <  1:1833539/128‑1 (MQ=255)

                                                                                                       cTCAATATTACCTATATAGTTAAT‑‑T‑‑‑‑‑‑‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTtat                           <  2:49046/128‑1 (MQ=255)

                                                                                                        tCCATATTACCTATAGAGTTAAT‑‑GAT‑‑‑‑‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGTTCTTATATTTGTAGTTTTTATATATAGTTta                            >  1:1541859/1‑128 (MQ=255)

                                                                                                         ccATATTACCTATAGAGTTAAT‑‑GATATAT‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATGAGAGCGATCATCATAAAATGGTGATATTTATATCTGTGTTTGTATTAAATTTTTATTTTTTTTTtatatt                               >  1:972765/1‑126 (MQ=255)

                                                                                                         ccATATTACATATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATATACATATA‑‑TATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTtat                           <  2:321177/128‑1 (MQ=255)

                                                                                                              ttACCTATAGAGTTAAT‑‑GAT‑‑‑‑‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATTCAAGCGATCATAATAATATTGATAAATATATATGTGATTTGATCATAAATTTTTATTTTTTATTTATATTATATaattt                      >  2:1417625/1‑125 (MQ=255)

                                                                                                              ttACCTATAGAGTTAAT‑‑GAT‑‑‑‑‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGt                      >  1:1892597/1‑128 (MQ=255)

                                                                                                               tACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATGCAAGAGATCAGAATAAAATTGTTATATTTATATCTGATTTTTTCTTAAATTTGTAGTTTATATTTATAGTTTATAAAGTtaa                   >  2:1972794/1‑128 (MQ=255)

                                                                                                                          ttAAT‑‑G‑‑‑‑‑‑‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATTCAAGCGATCAGCATAAAATTGTGAAATTTATATCTGAGTTTGTCTTAAATTTGTATTTTTTATATATATTTTATAAATTTAATAATTTATAtt        >  1:1389858/1‑128 (MQ=255)

                                                                                                                             aT‑‑G‑‑‑‑‑‑‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGAttttt     <  2:1873220/128‑1 (MQ=255)

                                                                                                                                aatgatatatatatat‑‑atata‑‑tatatatatatatatatGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTa            <  1:1517709/118‑1 (MQ=255)

                                                                                                                                  tgatatatatatat‑‑atata‑‑tatatatatatatatatGCAAGCGATCAGCATAAAATTGAGATATTTATATCTGAGTTTGTCTTAAATTTTTAGTTTTTATTTATATTTTATATATATAATAATTTata          >  1:1565354/9‑126 (MQ=255)

                                                                                                                                   tatatatatatat‑‑atata‑‑tatatatatatatatatTCAAGCGCTCAGCATAAAATGGTGAAATTTATATCTGAGTTGGTATTATATTTTTAGTTTTTATTTATAGTTTATCTATTAAAAAATTTatat         >  1:1061808/8‑128 (MQ=255)

                                                                                                                                    tgatatatatat‑‑atata‑‑tatatatatatatatatGAAAGCTAAAAGCATAAAATAGTGAAATTTAGATATGAGTTTGTATTAAATTTTTATTTTTTATTTATATTTTATAAATTAAATAATTTATAtt        >  1:259119/7‑128 (MQ=255)

                                                                                                                                    atatatatatat‑‑atata‑‑tatatatatatatatatGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTTTAGTTTTTATTTATATTTTATAAATTTAATTATTTATAtt        >  1:879671/7‑128 (MQ=255)

                                                                                                                                     tatatatatat‑‑atata‑‑tatatatatatatatatGCTAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGAttt       <  2:427951/123‑1 (MQ=255)

                                                                                                                                     tatatatatat‑‑atata‑‑tatatatatatatatatGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGAttt       <  2:242358/123‑1 (MQ=255)

                                                                                                                                     tatatatatat‑‑atata‑‑tatatatatatatataaACAAGCTCACAACAAAATATGGATATATATATATCAGATTTTATATAAAATTTGTATTTTTTATATAGTTTATATAAATTAAATATTTTattttt       >  1:7645/6‑123 (MQ=255)

                                                                                                                                        atatatat‑‑atata‑‑tatatatatatatatatGCAAGCGATCAGCATAAAATTGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATATAGATTTTTa    >  1:1101765/3‑128 (MQ=255)

GAAACTTATTTTTGTAGTTGTAAGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATAT‑‑ATATA‑‑TATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAAT  >  CP016816/437754‑438008

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.